Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:43413354-43653374

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141 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rusc2 4 43381979 to 43427088 45109 + protein coding gene RUN and SH3 domain containing 2
Tssr36947 4 43414721 to 43414733 12 + TSS region transcription start site region 36947
Tssr36948 4 43416149 to 43416174 25 + TSS region transcription start site region 36948
Cpgi14186 4 43421514 to 43421779 265 CpG island CpG island 14186
Cpgi14187 4 43425745 to 43426002 257 CpG island CpG island 14187
Fam166b 4 43427019 to 43429134 2115 - protein coding gene family with sequence similarity 166, member B
Cpgi14188 4 43427465 to 43427746 281 CpG island CpG island 14188
Tssr41408 4 43429071 to 43429088 17 - TSS region transcription start site region 41408
Tssr41409 4 43429128 to 43429139 11 - TSS region transcription start site region 41409
Cpgi14189 4 43441851 to 43444145 2294 CpG island CpG island 14189
Tssr36949 4 43442236 to 43442315 79 + TSS region transcription start site region 36949
Tesk1 4 43442277 to 43448075 5798 + protein coding gene testis specific protein kinase 1
Tssr36950 4 43442320 to 43442339 19 + TSS region transcription start site region 36950
Tssr36951 4 43442360 to 43442369 9 + TSS region transcription start site region 36951
Tssr36952 4 43442402 to 43442411 9 + TSS region transcription start site region 36952
Tssr36953 4 43442468 to 43442483 15 + TSS region transcription start site region 36953
Tssr36954 4 43442484 to 43442501 17 + TSS region transcription start site region 36954
Tssr36955 4 43442514 to 43442527 13 + TSS region transcription start site region 36955
Tssr36956 4 43442560 to 43442567 7 + TSS region transcription start site region 36956
Tssr41410 4 43442958 to 43442973 15 - TSS region transcription start site region 41410
Tssr36957 4 43443079 to 43443090 11 + TSS region transcription start site region 36957
Tssr36958 4 43443102 to 43443130 28 + TSS region transcription start site region 36958
Tssr36959 4 43443135 to 43443156 21 + TSS region transcription start site region 36959
Tssr36960 4 43443157 to 43443169 12 + TSS region transcription start site region 36960
Tssr36961 4 43446005 to 43446028 23 + TSS region transcription start site region 36961
Cd72 4 43447724 to 43454741 7017 - protein coding gene CD72 antigen
Tssr36962 4 43452426 to 43452473 47 + TSS region transcription start site region 36962
Tssr41411 4 43452457 to 43452489 32 - TSS region transcription start site region 41411
Tssr41412 4 43452518 to 43452543 25 - TSS region transcription start site region 41412
Tssr41413 4 43452551 to 43452563 12 - TSS region transcription start site region 41413
Tssr41414 4 43452589 to 43452613 24 - TSS region transcription start site region 41414
Cpgi14190 4 43453367 to 43453898 531 CpG island CpG island 14190
Tssr36963 4 43453785 to 43453798 13 + TSS region transcription start site region 36963
Tssr36964 4 43453825 to 43453838 13 + TSS region transcription start site region 36964
Tssr36965 4 43454162 to 43454192 30 + TSS region transcription start site region 36965
Tssr41415 4 43454537 to 43454547 10 - TSS region transcription start site region 41415
Tssr41416 4 43454564 to 43454576 12 - TSS region transcription start site region 41416
Tssr41417 4 43454582 to 43454587 5 - TSS region transcription start site region 41417
Tssr41418 4 43454600 to 43454635 35 - TSS region transcription start site region 41418
Tssr41419 4 43454876 to 43454900 24 - TSS region transcription start site region 41419
Tssr41420 4 43454913 to 43454928 15 - TSS region transcription start site region 41420
Tssr36966 4 43466155 to 43466169 14 + TSS region transcription start site region 36966
Tssr36967 4 43473400 to 43473429 29 + TSS region transcription start site region 36967
Tssr41421 4 43478765 to 43478811 46 - TSS region transcription start site region 41421
Sit1 4 43482083 to 43483709 1626 - protein coding gene suppression inducing transmembrane adaptor 1
Tssr36968 4 43482271 to 43482288 17 + TSS region transcription start site region 36968
Tssr41422 4 43483588 to 43483598 10 - TSS region transcription start site region 41422
Tssr41423 4 43483696 to 43483730 34 - TSS region transcription start site region 41423
Cpgi14191 4 43492749 to 43493874 1125 CpG island CpG island 14191
Rmrp 4 43492785 to 43493059 274 - RNase MRP RNA gene RNA component of mitochondrial RNAase P
Tssr36969 4 43492823 to 43492841 18 + TSS region transcription start site region 36969
Tssr41424 4 43493051 to 43493065 14 - TSS region transcription start site region 41424
Ccdc107 4 43493340 to 43495921 2581 + protein coding gene coiled-coil domain containing 107
Tssr36970 4 43493345 to 43493430 85 + TSS region transcription start site region 36970
Arhgef39 4 43496142 to 43499695 3553 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 39
Cpgi14192 4 43499232 to 43499929 697 CpG island CpG island 14192
Tssr41425 4 43499617 to 43499677 60 - TSS region transcription start site region 41425
Gm12454 4 43504428 to 43508747 4319 - antisense lncRNA gene predicted gene 12454
Tssr36971 4 43506338 to 43506360 22 + TSS region transcription start site region 36971
Tssr36972 4 43507018 to 43507034 16 + TSS region transcription start site region 36972
Car9 4 43507026 to 43513729 6703 + protein coding gene carbonic anhydrase 9
Tssr36973 4 43507040 to 43507051 11 + TSS region transcription start site region 36973
Tssr36974 4 43507085 to 43507096 11 + TSS region transcription start site region 36974
Cpgi14193 4 43508568 to 43508874 306 CpG island CpG island 14193
Tssr41426 4 43508714 to 43508734 20 - TSS region transcription start site region 41426
Tssr41427 4 43508740 to 43508753 13 - TSS region transcription start site region 41427
Tssr36975 4 43508850 to 43508899 49 + TSS region transcription start site region 36975
Tpm2 4 43514711 to 43523765 9054 - protein coding gene tropomyosin 2, beta
Tssr41428 4 43515168 to 43515190 22 - TSS region transcription start site region 41428
Tssr41429 4 43515302 to 43515321 19 - TSS region transcription start site region 41429
Tssr41430 4 43515701 to 43515765 64 - TSS region transcription start site region 41430
Tssr41431 4 43515787 to 43515801 14 - TSS region transcription start site region 41431
Tssr36976 4 43518410 to 43518441 31 + TSS region transcription start site region 36976
Tssr41432 4 43518438 to 43518455 17 - TSS region transcription start site region 41432
Tssr41433 4 43518459 to 43518473 14 - TSS region transcription start site region 41433
Tssr41434 4 43518685 to 43518704 19 - TSS region transcription start site region 41434
Tssr36977 4 43519236 to 43519257 21 + TSS region transcription start site region 36977
Tssr41435 4 43519255 to 43519299 44 - TSS region transcription start site region 41435
Tssr36978 4 43519408 to 43519474 66 + TSS region transcription start site region 36978
Tssr41436 4 43519661 to 43519718 57 - TSS region transcription start site region 41436
Tssr41437 4 43520045 to 43520059 14 - TSS region transcription start site region 41437
Tssr41438 4 43522727 to 43522750 23 - TSS region transcription start site region 41438
Tssr1155 4 43522849 to 43522903 54 - TSS region transcription start site region 1155
Cpgi14194 4 43523104 to 43524663 1559 CpG island CpG island 14194
Tssr41439 4 43523455 to 43523471 16 - TSS region transcription start site region 41439
Tssr41440 4 43523674 to 43523699 25 - TSS region transcription start site region 41440
Tssr41441 4 43523746 to 43523766 20 - TSS region transcription start site region 41441
Tssr41442 4 43523767 to 43523789 22 - TSS region transcription start site region 41442
Tssr41443 4 43523836 to 43523847 11 - TSS region transcription start site region 41443
Tln1 4 43531513 to 43562583 31070 - protein coding gene talin 1
Tssr41444 4 43533244 to 43533253 9 - TSS region transcription start site region 41444
Tssr41445 4 43533294 to 43533305 11 - TSS region transcription start site region 41445
Tssr41446 4 43533354 to 43533374 20 - TSS region transcription start site region 41446
Tssr41447 4 43534327 to 43534353 26 - TSS region transcription start site region 41447
Tssr36979 4 43555624 to 43555642 18 + TSS region transcription start site region 36979
Tssr36980 4 43555673 to 43555712 39 + TSS region transcription start site region 36980
Tssr36981 4 43555909 to 43555937 28 + TSS region transcription start site region 36981
Tssr41448 4 43555916 to 43555934 18 - TSS region transcription start site region 41448
Tssr41449 4 43556265 to 43556289 24 - TSS region transcription start site region 41449
Tssr41450 4 43558110 to 43558122 12 - TSS region transcription start site region 41450
Tssr41451 4 43558137 to 43558149 12 - TSS region transcription start site region 41451
Tssr41452 4 43558161 to 43558182 21 - TSS region transcription start site region 41452
Tssr41453 4 43558386 to 43558421 35 - TSS region transcription start site region 41453
Cpgi14195 4 43561774 to 43563094 1320 CpG island CpG island 14195
Tssr41454 4 43562161 to 43562172 11 - TSS region transcription start site region 41454
Tssr41455 4 43562174 to 43562185 11 - TSS region transcription start site region 41455
Tssr41456 4 43562187 to 43562199 12 - TSS region transcription start site region 41456
Tssr41457 4 43562212 to 43562255 43 - TSS region transcription start site region 41457
Tssr41458 4 43562261 to 43562272 11 - TSS region transcription start site region 41458
Tssr41459 4 43562297 to 43562308 11 - TSS region transcription start site region 41459
Tssr41460 4 43562312 to 43562323 11 - TSS region transcription start site region 41460
Tssr41461 4 43562397 to 43562430 33 - TSS region transcription start site region 41461
Tssr41462 4 43562478 to 43562497 19 - TSS region transcription start site region 41462
Tssr41463 4 43562514 to 43562517 3 - TSS region transcription start site region 41463
Tssr36982 4 43562613 to 43562670 57 + TSS region transcription start site region 36982
Creb3 4 43562634 to 43567060 4426 + protein coding gene cAMP responsive element binding protein 3
Tssr36983 4 43562672 to 43562693 21 + TSS region transcription start site region 36983
Tssr36984 4 43562706 to 43562715 9 + TSS region transcription start site region 36984
Gba2 4 43566928 to 43578864 11936 - protein coding gene glucosidase beta 2
Gm42278 4 43568928 to 43577648 8720 + lncRNA gene predicted gene, 42278
Cpgi14196 4 43578090 to 43579287 1197 CpG island CpG island 14196
Tssr41464 4 43578531 to 43578561 30 - TSS region transcription start site region 41464
Tssr41465 4 43578569 to 43578587 18 - TSS region transcription start site region 41465
Tssr41466 4 43578651 to 43578667 16 - TSS region transcription start site region 41466
Tssr36985 4 43578709 to 43578772 63 + TSS region transcription start site region 36985
Rgp1 4 43578735 to 43587487 8752 + protein coding gene RAB6A GEF compex partner 1
Tssr41467 4 43578824 to 43578909 85 - TSS region transcription start site region 41467
Tssr36986 4 43578921 to 43578974 53 + TSS region transcription start site region 36986
Msmp 4 43583216 to 43584494 1278 - protein coding gene microseminoprotein, prostate associated
Tssr41468 4 43584386 to 43584393 7 - TSS region transcription start site region 41468
Gm12472 4 43588072 to 43608755 20683 + antisense lncRNA gene predicted gene 12472
Gm42279 4 43603210 to 43622371 19161 - lncRNA gene predicted gene, 42279
Cpgi14197 4 43630938 to 43632622 1684 CpG island CpG island 14197
Tssr36987 4 43631355 to 43631414 59 + TSS region transcription start site region 36987
Tssr36988 4 43631417 to 43631437 20 + TSS region transcription start site region 36988
Gm25262 4 43631425 to 43631557 132 + miRNA gene predicted gene, 25262
Gm12473 4 43631539 to 43641533 9994 - antisense lncRNA gene predicted gene 12473
Tssr36989 4 43631587 to 43631598 11 + TSS region transcription start site region 36989
Npr2 4 43631935 to 43651244 19309 + protein coding gene natriuretic peptide receptor 2
Ps 4 43631935 to 80851736 37219801 heritable phenotypic marker polysyndactyly
Spag8 4 43651335 to 43653594 2259 - protein coding gene sperm associated antigen 8