Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:40964928-41306470

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Chmp5 4 40948553 to 40965302 16749 + protein coding gene charged multivesicular body protein 5
Cpgi14147 4 40970665 to 40971666 1001 CpG island CpG island 14147
Nfx1 4 40970906 to 41025992 55086 + protein coding gene nuclear transcription factor, X-box binding 1
Tssr36831 4 40970955 to 40971027 72 + TSS region transcription start site region 36831
Mir3094 4 40993695 to 40993758 63 + miRNA gene microRNA 3094
Tssr36832 4 41000988 to 41000992 4 + TSS region transcription start site region 36832
Aqp7 4 41033074 to 41048139 15065 - protein coding gene aquaporin 7
Tssr41288 4 41033668 to 41033674 6 - TSS region transcription start site region 41288
Tssr41289 4 41045381 to 41045448 67 - TSS region transcription start site region 41289
Tssr36833 4 41045512 to 41045544 32 + TSS region transcription start site region 36833
Tssr41290 4 41047599 to 41047638 39 - TSS region transcription start site region 41290
Tssr41291 4 41047955 to 41047974 19 - TSS region transcription start site region 41291
Tssr41292 4 41047983 to 41047999 16 - TSS region transcription start site region 41292
Tssr41293 4 41048002 to 41048013 11 - TSS region transcription start site region 41293
Tssr41294 4 41048086 to 41048119 33 - TSS region transcription start site region 41294
Tssr41295 4 41048124 to 41048140 16 - TSS region transcription start site region 41295
Tssr41296 4 41048151 to 41048162 11 - TSS region transcription start site region 41296
Gm25637 4 41050220 to 41050326 106 + snRNA gene predicted gene, 25637
D4Mit212 4 41052468 to 41052606 138 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 212
Cpgi14148 4 41055114 to 41055339 225 CpG island CpG island 14148
Tssr41297 4 41064397 to 41064425 28 - TSS region transcription start site region 41297
Tssr36834 4 41067845 to 41067853 8 + TSS region transcription start site region 36834
Cpgi14149 4 41075021 to 41075283 262 CpG island CpG island 14149
Aqp3 4 41092724 to 41098183 5459 - protein coding gene aquaporin 3
Tssr41298 4 41093356 to 41093368 12 - TSS region transcription start site region 41298
Tssr41299 4 41093423 to 41093440 17 - TSS region transcription start site region 41299
Tssr41300 4 41093465 to 41093477 12 - TSS region transcription start site region 41300
Tssr41301 4 41093520 to 41093532 12 - TSS region transcription start site region 41301
Tssr41302 4 41093590 to 41093601 11 - TSS region transcription start site region 41302
Tssr41303 4 41093668 to 41093689 21 - TSS region transcription start site region 41303
Tssr41304 4 41094733 to 41094744 11 - TSS region transcription start site region 41304
Tssr41305 4 41094816 to 41094844 28 - TSS region transcription start site region 41305
Tssr41306 4 41094887 to 41094927 40 - TSS region transcription start site region 41306
Cpgi14150 4 41097851 to 41098381 530 CpG island CpG island 14150
Tssr41307 4 41098174 to 41098190 16 - TSS region transcription start site region 41307
Nol6 4 41114427 to 41124339 9912 - protein coding gene nucleolar protein family 6 (RNA-associated)
Tssr41308 4 41114682 to 41114700 18 - TSS region transcription start site region 41308
Cpgi14151 4 41124174 to 41124540 366 CpG island CpG island 14151
Tssr41309 4 41124224 to 41124285 61 - TSS region transcription start site region 41309
Tssr1144 4 41124287 to 41124292 5 - TSS region transcription start site region 1144
Tssr41310 4 41124292 to 41124316 24 - TSS region transcription start site region 41310
Gm12402 4 41132511 to 41132844 333 - pseudogene predicted gene 12402
Cpgi14152 4 41134928 to 41136470 1542 CpG island CpG island 14152
Tssr36835 4 41135499 to 41135527 28 + TSS region transcription start site region 36835
Tssr36836 4 41135543 to 41135554 11 + TSS region transcription start site region 36836
Tssr36837 4 41135569 to 41135638 69 + TSS region transcription start site region 36837
Tssr36838 4 41135642 to 41135653 11 + TSS region transcription start site region 36838
Tssr36839 4 41135654 to 41135659 5 + TSS region transcription start site region 36839
Tssr36840 4 41135684 to 41135714 30 + TSS region transcription start site region 36840
Tssr1145 4 41135730 to 41135741 11 + TSS region transcription start site region 1145
Tssr36841 4 41135812 to 41135898 86 + TSS region transcription start site region 36841
Tssr36842 4 41135985 to 41135992 7 + TSS region transcription start site region 36842
Tssr36843 4 41135994 to 41136069 75 + TSS region transcription start site region 36843
Ube2r2 4 41136021 to 41193370 57349 + protein coding gene ubiquitin-conjugating enzyme E2R 2
Tssr36844 4 41136074 to 41136085 11 + TSS region transcription start site region 36844
Tssr36845 4 41136092 to 41136103 11 + TSS region transcription start site region 36845
Tssr1146 4 41138414 to 41138419 5 + TSS region transcription start site region 1146
Tssr36846 4 41152975 to 41152984 9 + TSS region transcription start site region 36846
Gm12403 4 41168646 to 41169604 958 + pseudogene predicted gene 12403
Gm24650 4 41172742 to 41172844 102 - snRNA gene predicted gene, 24650
2310029O18Rik 4 41177453 to 41179632 2179 unclassified gene RIKEN cDNA 2310029O18 gene
Tssr36847 4 41190642 to 41190656 14 + TSS region transcription start site region 36847
Tssr36848 4 41190919 to 41190976 57 + TSS region transcription start site region 36848
Tssr36849 4 41190979 to 41191010 31 + TSS region transcription start site region 36849
Tssr36850 4 41191062 to 41191110 48 + TSS region transcription start site region 36850
Tssr36851 4 41191183 to 41191222 39 + TSS region transcription start site region 36851
Tssr41311 4 41191229 to 41191240 11 - TSS region transcription start site region 41311
Tssr41312 4 41191242 to 41191255 13 - TSS region transcription start site region 41312
Ubap2 4 41194313 to 41275144 80831 - protein coding gene ubiquitin-associated protein 2
Gm22888 4 41203057 to 41203133 76 - snoRNA gene predicted gene, 22888
Tssr41313 4 41203583 to 41203593 10 - TSS region transcription start site region 41313
Tssr41314 4 41206284 to 41206300 16 - TSS region transcription start site region 41314
Tssr41315 4 41207026 to 41207037 11 - TSS region transcription start site region 41315
Tssr41316 4 41207058 to 41207066 8 - TSS region transcription start site region 41316
Gm24837 4 41211502 to 41211582 80 - snoRNA gene predicted gene, 24837
Tssr41317 4 41211858 to 41211900 42 - TSS region transcription start site region 41317
Gm23090 4 41213776 to 41213853 77 - snoRNA gene predicted gene, 23090
Gm12401 4 41252617 to 41252844 227 + pseudogene predicted gene 12401
D4Ertd58e 4 41261257 to 41261490 233 DNA segment DNA segment, Chr 4, ERATO Doi 58, expressed
Cpgi14153 4 41274589 to 41275856 1267 CpG island CpG island 14153
Tssr41318 4 41275091 to 41275118 27 - TSS region transcription start site region 41318
Tssr41319 4 41275274 to 41275283 9 - TSS region transcription start site region 41319
Tssr41320 4 41275296 to 41275309 13 - TSS region transcription start site region 41320
Tssr41321 4 41275322 to 41275336 14 - TSS region transcription start site region 41321
Tssr41322 4 41275348 to 41275359 11 - TSS region transcription start site region 41322
Tssr36852 4 41275486 to 41275497 11 + TSS region transcription start site region 36852
Tssr36853 4 41275700 to 41275749 49 + TSS region transcription start site region 36853
Gm42273 4 41281625 to 41285141 3516 - lncRNA gene predicted gene, 42273
Tssr1147 4 41284355 to 41284356 1 + TSS region transcription start site region 1147
Dcaf12 4 41291300 to 41314889 23589 - protein coding gene DDB1 and CUL4 associated factor 12
n-R5s183 4 41303158 to 41303272 114 + rRNA gene nuclear encoded rRNA 5S 183