Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:34900000-37100000

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cga 4 34893779 to 34907370 13591 + protein coding gene glycoprotein hormones, alpha subunit
Tssr36780 4 34905149 to 34905158 9 + TSS region transcription start site region 36780
Platr9 4 34909789 to 34911481 1692 - lncRNA gene pluripotency associated transcript 9
Gm12361 4 34919134 to 34920517 1383 + pseudogene predicted gene 12361
Gm12362 4 34941008 to 34941349 341 - pseudogene predicted gene 12362
Cpgi14126 4 34941231 to 34941430 199 CpG island CpG island 14126
Mob3b 4 34949074 to 35157484 208410 - protein coding gene MOB kinase activator 3B
Tssr1136 4 34950665 to 34950669 4 - TSS region transcription start site region 1136
Tssr41209 4 34952456 to 34952464 8 - TSS region transcription start site region 41209
Gm12364 4 34962220 to 34966965 4745 + antisense lncRNA gene predicted gene 12364
D4Ertd628e 4 34978570 to 34978819 249 DNA segment DNA segment, Chr 4, ERATO Doi 628, expressed
Gm33620 4 34986545 to 35001497 14952 + lncRNA gene predicted gene, 33620
Flal3 4 35000000 to 37000000 2000000 QTL fatty liver accumulation QTL 3, females only
Tssr41210 4 35020015 to 35020026 11 - TSS region transcription start site region 41210
D4Mit39 4 35033181 to 35033352 171 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 39
Tssr41211 4 35035610 to 35035614 4 - TSS region transcription start site region 41211
Cpgi14127 4 35096403 to 35096903 500 CpG island CpG island 14127
Cpgi14128 4 35100078 to 35100357 279 CpG island CpG island 14128
Tssr41212 4 35113623 to 35113672 49 - TSS region transcription start site region 41212
Tssr41213 4 35125336 to 35125348 12 - TSS region transcription start site region 41213
Tssr41214 4 35130757 to 35130761 4 - TSS region transcription start site region 41214
Ifnk 4 35152056 to 35154005 1949 + protein coding gene interferon kappa
Cpgi14129 4 35155879 to 35157613 1734 CpG island CpG island 14129
Tssr41215 4 35157404 to 35157500 96 - TSS region transcription start site region 41215
Tssr41216 4 35158249 to 35158260 11 - TSS region transcription start site region 41216
C9orf72 4 35191282 to 35226135 34853 - protein coding gene C9orf72, member of C9orf72-SMCR8 complex
Gm12366 4 35202103 to 35202975 872 - pseudogene predicted gene 12366
Tssr41217 4 35206849 to 35206854 5 - TSS region transcription start site region 41217
Tssr41218 4 35211282 to 35211295 13 - TSS region transcription start site region 41218
Tssr36781 4 35224401 to 35224412 11 + TSS region transcription start site region 36781
Tssr41219 4 35225178 to 35225189 11 - TSS region transcription start site region 41219
Cpgi14130 4 35225184 to 35226608 1424 CpG island CpG island 14130
Tssr41220 4 35225199 to 35225207 8 - TSS region transcription start site region 41220
Tssr41221 4 35225789 to 35225857 68 - TSS region transcription start site region 41221
Gm12367 4 35225897 to 35262222 36325 + unclassified non-coding RNA gene predicted gene 12367
Tssr36782 4 35226200 to 35226221 21 + TSS region transcription start site region 36782
Tssr36783 4 35226223 to 35226242 19 + TSS region transcription start site region 36783
Tssr36784 4 35226871 to 35226875 4 + TSS region transcription start site region 36784
Gm18607 4 35320686 to 35321399 713 - pseudogene predicted gene, 18607
Gm33672 4 35323827 to 35329659 5832 - lncRNA gene predicted gene, 33672
Gm12368 4 35401058 to 35401491 433 + pseudogene predicted gene 12368
Gm12365 4 35436214 to 35436781 567 + pseudogene predicted gene 12365
Lingo2 4 35706647 to 36951747 1245100 - protein coding gene leucine rich repeat and Ig domain containing 2
Cpgi14131 4 35708377 to 35708724 347 CpG island CpG island 14131
Tssr41222 4 35795200 to 35795204 4 - TSS region transcription start site region 41222
Gm12369 4 36003241 to 36004146 905 - pseudogene predicted gene 12369
Tssr41223 4 36006004 to 36006007 3 - TSS region transcription start site region 41223
A330107A15Rik 4 36154093 to 36154583 490 unclassified gene RIKEN cDNA A330107A15 gene
Tssr41224 4 36321165 to 36321170 5 - TSS region transcription start site region 41224
Gm12370 4 36444308 to 36444884 576 + pseudogene predicted gene 12370
Mir876 4 36645373 to 36645453 80 - miRNA gene microRNA 876
Tssr41225 4 36654162 to 36654165 3 - TSS region transcription start site region 41225
Tssr41226 4 36664950 to 36664953 3 - TSS region transcription start site region 41226
Mir873a 4 36668510 to 36668586 76 - miRNA gene microRNA 873a
Mir873b 4 36668510 to 36668586 76 + miRNA gene microRNA 873b
Gm23314 4 36756048 to 36756154 106 + snRNA gene predicted gene, 23314
D4Mit194 4 36819216 to 36819361 145 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 194
Tssr41227 4 36856502 to 36856506 4 - TSS region transcription start site region 41227
Tssr41228 4 36936311 to 36936315 4 - TSS region transcription start site region 41228
Cpgi14132 4 36950226 to 36950957 731 CpG island CpG island 14132
Cpgi14133 4 36951146 to 36952100 954 CpG island CpG island 14133
Tssr41229 4 36951689 to 36951759 70 - TSS region transcription start site region 41229
Tssr36785 4 36952930 to 36952970 40 + TSS region transcription start site region 36785
Gm12371 4 36952966 to 36988032 35066 + lincRNA gene predicted gene 12371
Gm42269 4 37086049 to 37099185 13136 + lncRNA gene predicted gene, 42269