Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:34119886-35109931

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr36762 4 34124937 to 34124943 6 + TSS region transcription start site region 36762
Gm12753 4 34130854 to 34134800 3946 + lincRNA gene predicted gene 12753
Tssr1133 4 34209163 to 34209166 3 - TSS region transcription start site region 1133
Gm46855 4 34282127 to 34282438 311 - pseudogene predicted gene, 46855
Gm33286 4 34307828 to 34316288 8460 + lncRNA gene predicted gene, 33286
Gm20764 4 34310975 to 34319792 8817 - protein coding gene predicted gene, 20764
Gm12751 4 34354043 to 34354423 380 + pseudogene predicted gene 12751
Gm46882 4 34365894 to 34371829 5935 - lncRNA gene predicted gene, 46882
Gm12752 4 34380171 to 34380981 810 - pseudogene predicted gene 12752
Tssr41189 4 34381082 to 34381083 1 - TSS region transcription start site region 41189
Gm12754 4 34389394 to 34389847 453 - pseudogene predicted gene 12754
D4Mit172 4 34395160 to 34395290 130 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 172
Ssrq9 4 34395160 to 46332776 11937616 QTL stress response QTL 9
Alcp8 4 34395160 to 34395290 130 QTL alcohol preference locus 8, female specific
Alcp7 4 34395160 to 34395290 130 QTL alcohol preference locus 7, male specific
Gm23466 4 34434296 to 34434401 105 + unclassified non-coding RNA gene predicted gene, 23466
Tssr1134 4 34434458 to 34434459 1 - TSS region transcription start site region 1134
Gm12351 4 34457890 to 34458181 291 + pseudogene predicted gene 12351
Gm33434 4 34482884 to 34485591 2707 - lncRNA gene predicted gene, 33434
Tssr36763 4 34485734 to 34485766 32 + TSS region transcription start site region 36763
Tssr36764 4 34485769 to 34485780 11 + TSS region transcription start site region 36764
Tssr36765 4 34485782 to 34485797 15 + TSS region transcription start site region 36765
Gm12350 4 34485832 to 34486293 461 + pseudogene predicted gene 12350
Cpgi14119 4 34550417 to 34551707 1290 CpG island CpG island 14119
Tssr36766 4 34550587 to 34550662 75 + TSS region transcription start site region 36766
Tssr36767 4 34550677 to 34550688 11 + TSS region transcription start site region 36767
Tssr36768 4 34550900 to 34550916 16 + TSS region transcription start site region 36768
Tssr36769 4 34550918 to 34550929 11 + TSS region transcription start site region 36769
Tssr36770 4 34550931 to 34550945 14 + TSS region transcription start site region 36770
Akirin2 4 34550937 to 34566908 15971 + protein coding gene akirin 2
Tssr41190 4 34551437 to 34551447 10 - TSS region transcription start site region 41190
Orc3 4 34570796 to 34614944 44148 - protein coding gene origin recognition complex, subunit 3
Tssr41191 4 34587048 to 34587088 40 - TSS region transcription start site region 41191
Tssr36771 4 34588505 to 34588508 3 + TSS region transcription start site region 36771
Cpgi14120 4 34614597 to 34615251 654 CpG island CpG island 14120
Tssr41192 4 34614886 to 34614931 45 - TSS region transcription start site region 41192
Tssr36772 4 34614940 to 34614996 56 + TSS region transcription start site region 36772
Rars2 4 34614957 to 34660167 45210 + protein coding gene arginyl-tRNA synthetase 2, mitochondrial
Slc35a1 4 34663257 to 34687438 24181 - protein coding gene solute carrier family 35 (CMP-sialic acid transporter), member 1
Gm22849 4 34683879 to 34684185 306 + unclassified non-coding RNA gene predicted gene, 22849
Cpgi14121 4 34686778 to 34687573 795 CpG island CpG island 14121
Tssr41193 4 34687262 to 34687309 47 - TSS region transcription start site region 41193
Tssr41194 4 34687312 to 34687342 30 - TSS region transcription start site region 41194
Tssr41195 4 34687347 to 34687375 28 - TSS region transcription start site region 41195
Tssr41196 4 34687382 to 34687452 70 - TSS region transcription start site region 41196
Tssr41197 4 34687457 to 34687464 7 - TSS region transcription start site region 41197
Cfap206 4 34688559 to 34730206 41647 - protein coding gene cilia and flagella associated protein 206
Cpgi14122 4 34729872 to 34730326 454 CpG island CpG island 14122
Tssr1135 4 34730120 to 34730127 7 - TSS region transcription start site region 1135
Tssr41198 4 34730142 to 34730153 11 - TSS region transcription start site region 41198
Tssr41199 4 34730157 to 34730232 75 - TSS region transcription start site region 41199
Gm136 4 34743788 to 34756259 12471 - protein coding gene predicted gene 136
Tssr41200 4 34756195 to 34756201 6 - TSS region transcription start site region 41200
Tssr41201 4 34756222 to 34756233 11 - TSS region transcription start site region 41201
Tssr41202 4 34756234 to 34756267 33 - TSS region transcription start site region 41202
Smim8 4 34768664 to 34778396 9732 - protein coding gene small integral membrane protein 8
Cpgi14123 4 34778219 to 34778532 313 CpG island CpG island 14123
Tssr41203 4 34778322 to 34778381 59 - TSS region transcription start site region 41203
Zfp292 4 34803113 to 34882960 79847 - protein coding gene zinc finger protein 292
Tssr41204 4 34805884 to 34805887 3 - TSS region transcription start site region 41204
Tssr41205 4 34806307 to 34806348 41 - TSS region transcription start site region 41205
Tssr41206 4 34806927 to 34806975 48 - TSS region transcription start site region 41206
Tssr41207 4 34834862 to 34834865 3 - TSS region transcription start site region 41207
Gm12363 4 34842985 to 34843652 667 + pseudogene predicted gene 12363
2810040C05Rik 4 34855496 to 34856850 1354 unclassified gene RIKEN cDNA 2810040C05 gene
Cpgi14124 4 34882325 to 34883275 950 CpG island CpG island 14124
Tssr41208 4 34882919 to 34882964 45 - TSS region transcription start site region 41208
Cpgi14125 4 34886537 to 34887140 603 CpG island CpG island 14125
Tssr36773 4 34886642 to 34886654 12 + TSS region transcription start site region 36773
Tssr36774 4 34886688 to 34886712 24 + TSS region transcription start site region 36774
A330027G23Rik 4 34886711 to 34889905 3194 unclassified gene RIKEN cDNA A330027G23 gene
D4Mit41 4 34892515 to 34892635 120 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 41
Nbwa2 4 34892515 to 34892635 120 QTL NZB and NZW autoimmunity 2
D4Nds3 4 34892543 to 34892680 137 DNA segment DNA segment, Chr 4, Nuffield Department of Surgery 3
Tssr36775 4 34893729 to 34893738 9 + TSS region transcription start site region 36775
Tssr36776 4 34893751 to 34893759 8 + TSS region transcription start site region 36776
Tssr36777 4 34893761 to 34893766 5 + TSS region transcription start site region 36777
Tssr36778 4 34893772 to 34893787 15 + TSS region transcription start site region 36778
Cga 4 34893779 to 34907370 13591 + protein coding gene glycoprotein hormones, alpha subunit
Tssr36779 4 34893794 to 34893816 22 + TSS region transcription start site region 36779
Tssr36780 4 34905149 to 34905158 9 + TSS region transcription start site region 36780
Platr9 4 34909789 to 34911481 1692 - lncRNA gene pluripotency associated transcript 9
Gm12361 4 34919134 to 34920517 1383 + pseudogene predicted gene 12361
Gm12362 4 34941008 to 34941349 341 - pseudogene predicted gene 12362
Cpgi14126 4 34941231 to 34941430 199 CpG island CpG island 14126
Mob3b 4 34949074 to 35157484 208410 - protein coding gene MOB kinase activator 3B
Tssr1136 4 34950665 to 34950669 4 - TSS region transcription start site region 1136
Tssr41209 4 34952456 to 34952464 8 - TSS region transcription start site region 41209
Gm12364 4 34962220 to 34966965 4745 + antisense lncRNA gene predicted gene 12364
D4Ertd628e 4 34978570 to 34978819 249 DNA segment DNA segment, Chr 4, ERATO Doi 628, expressed
Gm33620 4 34986545 to 35001497 14952 + lncRNA gene predicted gene, 33620
Flal3 4 35000000 to 37000000 2000000 QTL fatty liver accumulation QTL 3, females only
Tssr41210 4 35020015 to 35020026 11 - TSS region transcription start site region 41210
D4Mit39 4 35033181 to 35033352 171 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 39
Tssr41211 4 35035610 to 35035614 4 - TSS region transcription start site region 41211
Cpgi14127 4 35096403 to 35096903 500 CpG island CpG island 14127
Cpgi14128 4 35100078 to 35100357 279 CpG island CpG island 14128