Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:88612139-88912152

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arhgef2 3 88605966 to 88648052 42086 + protein coding gene rho/rac guanine nucleotide exchange factor (GEF) 2
Tssr29992 3 88615404 to 88615434 30 + TSS region transcription start site region 29992
Tssr29993 3 88615444 to 88615470 26 + TSS region transcription start site region 29993
Tssr29994 3 88616133 to 88616151 18 + TSS region transcription start site region 29994
Tssr29995 3 88616194 to 88616248 54 + TSS region transcription start site region 29995
Tssr29996 3 88616284 to 88616293 9 + TSS region transcription start site region 29996
Tssr936 3 88616423 to 88616438 15 + TSS region transcription start site region 936
Gm20652 3 88617908 to 88621110 3202 - antisense lncRNA gene predicted gene 20652
Tssr29997 3 88620432 to 88620440 8 + TSS region transcription start site region 29997
Cpgi13387 3 88620847 to 88622121 1274 CpG island CpG island 13387
Tssr29998 3 88621102 to 88621130 28 + TSS region transcription start site region 29998
Tssr29999 3 88621144 to 88621173 29 + TSS region transcription start site region 29999
Tssr30000 3 88621203 to 88621214 11 + TSS region transcription start site region 30000
Tssr30001 3 88621274 to 88621285 11 + TSS region transcription start site region 30001
Tssr30002 3 88621459 to 88621539 80 + TSS region transcription start site region 30002
Tssr30003 3 88621834 to 88621874 40 + TSS region transcription start site region 30003
Tssr30004 3 88621915 to 88621940 25 + TSS region transcription start site region 30004
Tssr34057 3 88622728 to 88622733 5 - TSS region transcription start site region 34057
Tssr34058 3 88623131 to 88623147 16 - TSS region transcription start site region 34058
Tssr30005 3 88625571 to 88625576 5 + TSS region transcription start site region 30005
Tssr30006 3 88626511 to 88626539 28 + TSS region transcription start site region 30006
Tssr30007 3 88629463 to 88629479 16 + TSS region transcription start site region 30007
Tssr30008 3 88629499 to 88629510 11 + TSS region transcription start site region 30008
Cpgi13388 3 88643966 to 88644207 241 CpG island CpG island 13388
Tssr30009 3 88644774 to 88644785 11 + TSS region transcription start site region 30009
Tssr30010 3 88646862 to 88646888 26 + TSS region transcription start site region 30010
Tssr30011 3 88646914 to 88646926 12 + TSS region transcription start site region 30011
Tssr30012 3 88647412 to 88647432 20 + TSS region transcription start site region 30012
Tssr30013 3 88647730 to 88647744 14 + TSS region transcription start site region 30013
Rxfp4 3 88651898 to 88653142 1244 - protein coding gene relaxin family peptide receptor 4
Gm43714 3 88685024 to 88686397 1373 - antisense lncRNA gene predicted gene 43714
Tssr30014 3 88685424 to 88685442 18 + TSS region transcription start site region 30014
Cpgi13389 3 88685451 to 88686686 1235 CpG island CpG island 13389
Tssr30015 3 88685785 to 88685796 11 + TSS region transcription start site region 30015
Tssr30016 3 88685802 to 88685852 50 + TSS region transcription start site region 30016
Khdc4 3 88685803 to 88712924 27121 + protein coding gene KH domain containing 4, pre-mRNA splicing factor
Gm25820 3 88693931 to 88694057 126 + snoRNA gene predicted gene, 25820
Tssr30017 3 88702114 to 88702119 5 + TSS region transcription start site region 30017
Gm25945 3 88707158 to 88707292 134 + snoRNA gene predicted gene, 25945
Cpgi13390 3 88716744 to 88717240 496 CpG island CpG island 13390
Tssr30018 3 88716838 to 88716883 45 + TSS region transcription start site region 30018
Rit1 3 88716841 to 88731048 14207 + protein coding gene Ras-like without CAAX 1
Tssr30019 3 88716884 to 88716905 21 + TSS region transcription start site region 30019
Tssr30020 3 88716916 to 88716921 5 + TSS region transcription start site region 30020
Gm17146 3 88722090 to 88722670 580 + antisense lncRNA gene predicted gene 17146
Gm10253 3 88738753 to 88739692 939 - unclassified gene predicted gene 10253
Syt11 3 88744699 to 88775159 30460 - protein coding gene synaptotagmin XI
Tssr34059 3 88744986 to 88744999 13 - TSS region transcription start site region 34059
Tssr34060 3 88745056 to 88745068 12 - TSS region transcription start site region 34060
Tssr34061 3 88748878 to 88748889 11 - TSS region transcription start site region 34061
Tssr34062 3 88752845 to 88752849 4 - TSS region transcription start site region 34062
Tssr34063 3 88755964 to 88755966 2 - TSS region transcription start site region 34063
Cpgi13391 3 88761815 to 88762014 199 CpG island CpG island 13391
Tssr34064 3 88762139 to 88762152 13 - TSS region transcription start site region 34064
Tssr34065 3 88762244 to 88762255 11 - TSS region transcription start site region 34065
Tssr34066 3 88772578 to 88772601 23 - TSS region transcription start site region 34066
5830417I10Rik 3 88775216 to 88825587 50371 + pseudogene RIKEN cDNA 5830417I10 gene
Cpgi13392 3 88775362 to 88775602 240 CpG island CpG island 13392
1500004A13Rik 3 88822010 to 88832487 10477 - lncRNA gene RIKEN cDNA 1500004A13 gene
Tssr34067 3 88832546 to 88832571 25 - TSS region transcription start site region 34067
Gon4l 3 88835231 to 88910103 74872 + protein coding gene gon-4-like (C.elegans)
Gm43713 3 88845025 to 88900001 54976 - antisense lncRNA gene predicted gene 43713
Gm23054 3 88862919 to 88863080 161 + snRNA gene predicted gene, 23054
Gm40091 3 88880917 to 88899936 19019 - lncRNA gene predicted gene, 40091
n-R5s197 3 88906510 to 88906628 118 + rRNA gene nuclear encoded rRNA 5S 197
Msto1 3 88909616 to 88913950 4334 - protein coding gene misato 1, mitochondrial distribution and morphology regulator