Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:88456066-88597355

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sema4a 3 88435959 to 88461182 25223 - protein coding gene sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
Tssr34031 3 88456397 to 88456441 44 - TSS region transcription start site region 34031
Tssr34032 3 88458852 to 88458899 47 - TSS region transcription start site region 34032
Tssr34033 3 88459021 to 88459043 22 - TSS region transcription start site region 34033
Tssr34034 3 88459047 to 88459074 27 - TSS region transcription start site region 34034
Tssr34035 3 88461196 to 88461226 30 - TSS region transcription start site region 34035
Tssr34036 3 88461303 to 88461314 11 - TSS region transcription start site region 34036
Gm40089 3 88462094 to 88466135 4041 - lncRNA gene predicted gene, 40089
Gm5979 3 88474584 to 88475154 570 + pseudogene predicted gene 5979
Lmna 3 88481148 to 88509932 28784 - protein coding gene lamin A
Tssr34037 3 88481907 to 88481915 8 - TSS region transcription start site region 34037
Cpgi13378 3 88482407 to 88482587 180 CpG island CpG island 13378
Tssr29952 3 88483332 to 88483382 50 + TSS region transcription start site region 29952
Cpgi13379 3 88484553 to 88485222 669 CpG island CpG island 13379
Cpgi13380 3 88492973 to 88493225 252 CpG island CpG island 13380
Tssr34038 3 88498561 to 88498646 85 - TSS region transcription start site region 34038
Cpgi13381 3 88502651 to 88503466 815 CpG island CpG island 13381
Tssr933 3 88503029 to 88503039 10 - TSS region transcription start site region 933
Tssr34039 3 88503061 to 88503067 6 - TSS region transcription start site region 34039
Tssr34040 3 88503187 to 88503323 136 - TSS region transcription start site region 34040
Tssr34041 3 88503331 to 88503350 19 - TSS region transcription start site region 34041
Tssr34042 3 88503598 to 88503614 16 - TSS region transcription start site region 34042
Tssr34043 3 88509943 to 88509992 49 - TSS region transcription start site region 34043
Cpgi13382 3 88509990 to 88510271 281 CpG island CpG island 13382
Tssr34044 3 88511110 to 88511123 13 - TSS region transcription start site region 34044
Tssr34045 3 88512604 to 88512620 16 - TSS region transcription start site region 34045
Tssr29953 3 88514044 to 88514067 23 + TSS region transcription start site region 29953
Gm37584 3 88526066 to 88527355 1289 - lincRNA gene predicted gene, 37584
Gm38618 3 88529266 to 88531792 2526 - lncRNA gene predicted gene, 38618
Cpgi13383 3 88531248 to 88533374 2126 CpG island CpG island 13383
Tssr34046 3 88531381 to 88531393 12 - TSS region transcription start site region 34046
Tssr29954 3 88531494 to 88531527 33 + TSS region transcription start site region 29954
Tssr29955 3 88531529 to 88531545 16 + TSS region transcription start site region 29955
Tssr29956 3 88531904 to 88531995 91 + TSS region transcription start site region 29956
Tssr29957 3 88532314 to 88532396 82 + TSS region transcription start site region 29957
Mex3a 3 88532395 to 88541394 8999 + protein coding gene mex3 RNA binding family member A
Tssr29958 3 88532712 to 88532765 53 + TSS region transcription start site region 29958
Cpgi13384 3 88536119 to 88537115 996 CpG island CpG island 13384
Mir1905 3 88536301 to 88536382 81 - miRNA gene microRNA 1905
Tssr29959 3 88537330 to 88537338 8 + TSS region transcription start site region 29959
Tssr29960 3 88537364 to 88537377 13 + TSS region transcription start site region 29960
Rab25 3 88542029 to 88548279 6250 - protein coding gene RAB25, member RAS oncogene family
Tssr34047 3 88548264 to 88548311 47 - TSS region transcription start site region 34047
Lamtor2 3 88549819 to 88552927 3108 - protein coding gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 2
Cpgi13385 3 88552389 to 88554422 2033 CpG island CpG island 13385
Tssr34048 3 88552843 to 88552855 12 - TSS region transcription start site region 34048
Tssr34049 3 88552861 to 88552958 97 - TSS region transcription start site region 34049
Tssr934 3 88553707 to 88553736 29 + TSS region transcription start site region 934
Tssr29961 3 88553754 to 88553806 52 + TSS region transcription start site region 29961
Ubqln4 3 88553758 to 88569725 15967 + protein coding gene ubiquilin 4
Tssr34050 3 88554445 to 88554460 15 - TSS region transcription start site region 34050
Tssr29962 3 88563184 to 88563221 37 + TSS region transcription start site region 29962
Tssr935 3 88563763 to 88563801 38 + TSS region transcription start site region 935
Tssr29963 3 88564447 to 88564459 12 + TSS region transcription start site region 29963
Tssr29964 3 88568238 to 88568265 27 + TSS region transcription start site region 29964
Tssr34051 3 88570464 to 88570481 17 - TSS region transcription start site region 34051
Tssr34052 3 88570483 to 88570495 12 - TSS region transcription start site region 34052
Tssr34053 3 88570527 to 88570532 5 - TSS region transcription start site region 34053
Tssr29965 3 88570598 to 88570637 39 + TSS region transcription start site region 29965
Tssr34054 3 88571856 to 88571863 7 - TSS region transcription start site region 34054
Tssr34055 3 88571888 to 88571899 11 - TSS region transcription start site region 34055
Tssr29966 3 88573247 to 88573253 6 + TSS region transcription start site region 29966
Tssr29967 3 88575759 to 88575770 11 + TSS region transcription start site region 29967
Tssr29968 3 88575795 to 88575810 15 + TSS region transcription start site region 29968
Tssr29969 3 88575825 to 88575852 27 + TSS region transcription start site region 29969
Tssr29970 3 88575893 to 88575934 41 + TSS region transcription start site region 29970
Gm10704 3 88576410 to 88577139 729 - pseudogene predicted pseudogene 10704
Tssr29971 3 88578009 to 88578040 31 + TSS region transcription start site region 29971
Tssr29972 3 88578506 to 88578513 7 + TSS region transcription start site region 29972
Cpgi13386 3 88579480 to 88579970 490 CpG island CpG island 13386
Ssr2 3 88579584 to 88588420 8836 + protein coding gene signal sequence receptor, beta
Tssr29973 3 88579602 to 88579727 125 + TSS region transcription start site region 29973
Tssr29974 3 88579857 to 88579864 7 + TSS region transcription start site region 29974
Tssr29975 3 88583765 to 88583783 18 + TSS region transcription start site region 29975
Tssr29976 3 88586888 to 88586901 13 + TSS region transcription start site region 29976
Tssr29977 3 88593090 to 88593113 23 + TSS region transcription start site region 29977
Tssr29978 3 88593118 to 88593142 24 + TSS region transcription start site region 29978
Tssr29979 3 88593169 to 88593187 18 + TSS region transcription start site region 29979
Tssr29980 3 88594093 to 88594107 14 + TSS region transcription start site region 29980