Gene symbol | Chromo- some |
Coordinates (bp, mm10) | Size (bp) | Strand | Feature Type | Gene name |
---|---|---|---|---|---|---|
hsh | 3 | 3096631 | heritable phenotypic marker | hind shaker | ||
Cia5a | 3 | 1969640 | QTL | collagen induced arthritis QTL 5a | ||
Cpgi13371 | 3 | 1049 | CpG island | CpG island 13371 | ||
Smg5 | 3 | 26077 | + | protein coding gene | Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans) | |
Tssr34004 | 3 | 28 | - | TSS region | transcription start site region 34004 | |
Tssr29943 | 3 | 10 | + | TSS region | transcription start site region 29943 | |
Tssr29944 | 3 | 4 | + | TSS region | transcription start site region 29944 | |
Tssr29945 | 3 | 15 | + | TSS region | transcription start site region 29945 | |
Cpgi13372 | 3 | 180 | CpG island | CpG island 13372 | ||
Tssr29946 | 3 | 13 | + | TSS region | transcription start site region 29946 | |
Cpgi13373 | 3 | 241 | CpG island | CpG island 13373 | ||
Tssr29947 | 3 | 58 | + | TSS region | transcription start site region 29947 | |
Paqr6 | 3 | 3957 | + | protein coding gene | progestin and adipoQ receptor family member VI | |
Cpgi13374 | 3 | 665 | CpG island | CpG island 13374 | ||
Bglap3 | 3 | 4125 | - | protein coding gene | bone gamma-carboxyglutamate protein 3 | |
Tssr34005 | 3 | 5 | - | TSS region | transcription start site region 34005 | |
Tssr34006 | 3 | 5 | - | TSS region | transcription start site region 34006 | |
Gm21956 | 3 | 1052 | + | pseudogene | predicted gene, 21956 | |
Bglap2 | 3 | 963 | - | protein coding gene | bone gamma-carboxyglutamate protein 2 | |
Del(3Bglap2-Bglap)1Vari | 3 | 6728 | cytogenetic marker | deletion, Chr3, Bart Williams | ||
Tssr34007 | 3 | 13 | - | TSS region | transcription start site region 34007 | |
Gm6821 | 3 | 1072 | + | pseudogene | predicted gene 6821 | |
Bglap | 3 | 963 | - | protein coding gene | bone gamma carboxyglutamate protein | |
Tssr34008 | 3 | 18 | - | TSS region | transcription start site region 34008 | |
Pmf1 | 3 | 16188 | - | protein coding gene | polyamine-modulated factor 1 | |
Tssr34009 | 3 | 44 | - | TSS region | transcription start site region 34009 | |
Cpgi13375 | 3 | 631 | CpG island | CpG island 13375 | ||
Tssr34010 | 3 | 27 | - | TSS region | transcription start site region 34010 | |
Tssr34011 | 3 | 56 | - | TSS region | transcription start site region 34011 | |
Tssr34012 | 3 | 5 | - | TSS region | transcription start site region 34012 | |
Tssr34013 | 3 | 11 | - | TSS region | transcription start site region 34013 | |
Slc25a44 | 3 | 14641 | - | protein coding gene | solute carrier family 25, member 44 | |
Cpgi13376 | 3 | 491 | CpG island | CpG island 13376 | ||
Tssr29948 | 3 | 6 | + | TSS region | transcription start site region 29948 | |
Gm33513 | 3 | 3588 | + | lncRNA gene | predicted gene, 33513 | |
Tssr34014 | 3 | 45 | - | TSS region | transcription start site region 34014 | |
Gm42814 | 3 | 459 | + | pseudogene | predicted gene 42814 | |
Sema4a | 3 | 25223 | - | protein coding gene | sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A | |
Cpgi13377 | 3 | 544 | CpG island | CpG island 13377 | ||
Mir7011 | 3 | 72 | - | miRNA gene | microRNA 7011 | |
Tssr34015 | 3 | 7 | - | TSS region | transcription start site region 34015 | |
Tssr29949 | 3 | 31 | + | TSS region | transcription start site region 29949 | |
Tssr29950 | 3 | 14 | + | TSS region | transcription start site region 29950 | |
Tssr34016 | 3 | 5 | - | TSS region | transcription start site region 34016 | |
Tssr34017 | 3 | 33 | - | TSS region | transcription start site region 34017 | |
Tssr34018 | 3 | 13 | - | TSS region | transcription start site region 34018 | |
Tssr34019 | 3 | 7 | - | TSS region | transcription start site region 34019 | |
Tssr34020 | 3 | 7 | - | TSS region | transcription start site region 34020 | |
Tssr34021 | 3 | 6 | - | TSS region | transcription start site region 34021 | |
Tssr34022 | 3 | 11 | - | TSS region | transcription start site region 34022 | |
Tssr34023 | 3 | 21 | - | TSS region | transcription start site region 34023 | |
Tssr932 | 3 | 9 | - | TSS region | transcription start site region 932 | |
Tssr29951 | 3 | 17 | + | TSS region | transcription start site region 29951 | |
Tssr34024 | 3 | 24 | - | TSS region | transcription start site region 34024 | |
Tssr34025 | 3 | 19 | - | TSS region | transcription start site region 34025 | |
Tssr34026 | 3 | 9 | - | TSS region | transcription start site region 34026 | |
Tssr34027 | 3 | 17 | - | TSS region | transcription start site region 34027 | |
Tssr34028 | 3 | 15 | - | TSS region | transcription start site region 34028 | |
Tssr34029 | 3 | 7 | - | TSS region | transcription start site region 34029 | |
Tssr34030 | 3 | 53 | - | TSS region | transcription start site region 34030 | |
Tssr34031 | 3 | 44 | - | TSS region | transcription start site region 34031 | |
Tssr34032 | 3 | 47 | - | TSS region | transcription start site region 34032 | |
Tssr34033 | 3 | 22 | - | TSS region | transcription start site region 34033 | |
Tssr34034 | 3 | 27 | - | TSS region | transcription start site region 34034 | |
Tssr34035 | 3 | 30 | - | TSS region | transcription start site region 34035 | |
Tssr34036 | 3 | 11 | - | TSS region | transcription start site region 34036 | |
Gm40089 | 3 | 4041 | - | lncRNA gene | predicted gene, 40089 | |
Gm5979 | 3 | 570 | + | pseudogene | predicted gene 5979 | |
Lmna | 3 | 28784 | - | protein coding gene | lamin A | |
Tssr34037 | 3 | 8 | - | TSS region | transcription start site region 34037 | |
Cpgi13378 | 3 | 180 | CpG island | CpG island 13378 | ||
Tssr29952 | 3 | 50 | + | TSS region | transcription start site region 29952 | |
Cpgi13379 | 3 | 669 | CpG island | CpG island 13379 | ||
Cpgi13380 | 3 | 252 | CpG island | CpG island 13380 | ||
Tssr34038 | 3 | 85 | - | TSS region | transcription start site region 34038 | |
Cpgi13381 | 3 | 815 | CpG island | CpG island 13381 | ||
Tssr933 | 3 | 10 | - | TSS region | transcription start site region 933 | |
Tssr34039 | 3 | 6 | - | TSS region | transcription start site region 34039 | |
Tssr34040 | 3 | 136 | - | TSS region | transcription start site region 34040 | |
Tssr34041 | 3 | 19 | - | TSS region | transcription start site region 34041 | |
Tssr34042 | 3 | 16 | - | TSS region | transcription start site region 34042 | |
Tssr34043 | 3 | 49 | - | TSS region | transcription start site region 34043 | |
Cpgi13382 | 3 | 281 | CpG island | CpG island 13382 | ||
Tssr34044 | 3 | 13 | - | TSS region | transcription start site region 34044 | |
Tssr34045 | 3 | 16 | - | TSS region | transcription start site region 34045 | |
Tssr29953 | 3 | 23 | + | TSS region | transcription start site region 29953 | |
Gm37584 | 3 | 1289 | - | lincRNA gene | predicted gene, 37584 | |
Gm38618 | 3 | 2526 | - | lncRNA gene | predicted gene, 38618 | |
Cpgi13383 | 3 | 2126 | CpG island | CpG island 13383 | ||
Tssr34046 | 3 | 12 | - | TSS region | transcription start site region 34046 | |
Tssr29954 | 3 | 33 | + | TSS region | transcription start site region 29954 | |
Tssr29955 | 3 | 16 | + | TSS region | transcription start site region 29955 | |
Tssr29956 | 3 | 91 | + | TSS region | transcription start site region 29956 | |
Tssr29957 | 3 | 82 | + | TSS region | transcription start site region 29957 | |
Mex3a | 3 | 8999 | + | protein coding gene | mex3 RNA binding family member A | |
Tssr29958 | 3 | 53 | + | TSS region | transcription start site region 29958 | |
Cpgi13384 | 3 | 996 | CpG island | CpG island 13384 | ||
Mir1905 | 3 | 81 | - | miRNA gene | microRNA 1905 | |
Tssr29959 | 3 | 8 | + | TSS region | transcription start site region 29959 | |
Tssr29960 | 3 | 13 | + | TSS region | transcription start site region 29960 | |
Rab25 | 3 | 6250 | - | protein coding gene | RAB25, member RAS oncogene family | |
Tssr34047 | 3 | 47 | - | TSS region | transcription start site region 34047 | |
Lamtor2 | 3 | 3108 | - | protein coding gene | late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 | |
Cpgi13385 | 3 | 2033 | CpG island | CpG island 13385 | ||
Tssr34048 | 3 | 12 | - | TSS region | transcription start site region 34048 | |
Tssr34049 | 3 | 97 | - | TSS region | transcription start site region 34049 | |
Tssr934 | 3 | 29 | + | TSS region | transcription start site region 934 | |
Tssr29961 | 3 | 52 | + | TSS region | transcription start site region 29961 | |
Ubqln4 | 3 | 15967 | + | protein coding gene | ubiquilin 4 | |
Tssr34050 | 3 | 15 | - | TSS region | transcription start site region 34050 | |
Tssr29962 | 3 | 37 | + | TSS region | transcription start site region 29962 | |
Tssr935 | 3 | 38 | + | TSS region | transcription start site region 935 | |
Tssr29963 | 3 | 12 | + | TSS region | transcription start site region 29963 | |
Tssr29964 | 3 | 27 | + | TSS region | transcription start site region 29964 | |
Tssr34051 | 3 | 17 | - | TSS region | transcription start site region 34051 | |
Tssr34052 | 3 | 12 | - | TSS region | transcription start site region 34052 | |
Tssr34053 | 3 | 5 | - | TSS region | transcription start site region 34053 | |
Tssr29965 | 3 | 39 | + | TSS region | transcription start site region 29965 | |
Tssr34054 | 3 | 7 | - | TSS region | transcription start site region 34054 | |
Tssr34055 | 3 | 11 | - | TSS region | transcription start site region 34055 | |
Tssr29966 | 3 | 6 | + | TSS region | transcription start site region 29966 | |
Tssr29967 | 3 | 11 | + | TSS region | transcription start site region 29967 | |
Tssr29968 | 3 | 15 | + | TSS region | transcription start site region 29968 | |
Tssr29969 | 3 | 27 | + | TSS region | transcription start site region 29969 | |
Tssr29970 | 3 | 41 | + | TSS region | transcription start site region 29970 | |
Gm10704 | 3 | 729 | - | pseudogene | predicted pseudogene 10704 | |
Tssr29971 | 3 | 31 | + | TSS region | transcription start site region 29971 | |
Tssr29972 | 3 | 7 | + | TSS region | transcription start site region 29972 | |
Cpgi13386 | 3 | 490 | CpG island | CpG island 13386 | ||
Ssr2 | 3 | 8836 | + | protein coding gene | signal sequence receptor, beta | |
Tssr29973 | 3 | 125 | + | TSS region | transcription start site region 29973 | |
Tssr29974 | 3 | 7 | + | TSS region | transcription start site region 29974 | |
Tssr29975 | 3 | 18 | + | TSS region | transcription start site region 29975 | |
Tssr29976 | 3 | 13 | + | TSS region | transcription start site region 29976 | |
Tssr29977 | 3 | 23 | + | TSS region | transcription start site region 29977 | |
Tssr29978 | 3 | 24 | + | TSS region | transcription start site region 29978 | |
Tssr29979 | 3 | 18 | + | TSS region | transcription start site region 29979 | |
Tssr29980 | 3 | 14 | + | TSS region | transcription start site region 29980 | |
Arhgef2 | 3 | 42086 | + | protein coding gene | rho/rac guanine nucleotide exchange factor (GEF) 2 | |
Gm40090 | 3 | 554 | - | lncRNA gene | predicted gene, 40090 | |
Tssr29981 | 3 | 72 | + | TSS region | transcription start site region 29981 | |
Tssr29982 | 3 | 17 | + | TSS region | transcription start site region 29982 | |
Tssr34056 | 3 | 13 | - | TSS region | transcription start site region 34056 | |
Tssr29983 | 3 | 30 | + | TSS region | transcription start site region 29983 | |
Tssr29984 | 3 | 6 | + | TSS region | transcription start site region 29984 | |
Tssr29985 | 3 | 3 | + | TSS region | transcription start site region 29985 | |
Tssr29986 | 3 | 13 | + | TSS region | transcription start site region 29986 | |
Tssr29987 | 3 | 8 | + | TSS region | transcription start site region 29987 | |
Tssr29988 | 3 | 30 | + | TSS region | transcription start site region 29988 | |
Tssr29989 | 3 | 15 | + | TSS region | transcription start site region 29989 | |
Tssr29990 | 3 | 14 | + | TSS region | transcription start site region 29990 | |
Tssr29991 | 3 | 6 | + | TSS region | transcription start site region 29991 | |
Tssr29992 | 3 | 30 | + | TSS region | transcription start site region 29992 | |
Tssr29993 | 3 | 26 | + | TSS region | transcription start site region 29993 | |
Tssr29994 | 3 | 18 | + | TSS region | transcription start site region 29994 | |
Tssr29995 | 3 | 54 | + | TSS region | transcription start site region 29995 | |
Tssr29996 | 3 | 9 | + | TSS region | transcription start site region 29996 | |
Tssr936 | 3 | 15 | + | TSS region | transcription start site region 936 | |
Gm20652 | 3 | 3202 | - | antisense lncRNA gene | predicted gene 20652 | |
Tssr29997 | 3 | 8 | + | TSS region | transcription start site region 29997 | |
Cpgi13387 | 3 | 1274 | CpG island | CpG island 13387 | ||
Tssr29998 | 3 | 28 | + | TSS region | transcription start site region 29998 | |
Tssr29999 | 3 | 29 | + | TSS region | transcription start site region 29999 | |
Tssr30000 | 3 | 11 | + | TSS region | transcription start site region 30000 | |
Tssr30001 | 3 | 11 | + | TSS region | transcription start site region 30001 | |
Tssr30002 | 3 | 80 | + | TSS region | transcription start site region 30002 | |
Tssr30003 | 3 | 40 | + | TSS region | transcription start site region 30003 | |
Tssr30004 | 3 | 25 | + | TSS region | transcription start site region 30004 | |
Tssr34057 | 3 | 5 | - | TSS region | transcription start site region 34057 | |
Tssr34058 | 3 | 16 | - | TSS region | transcription start site region 34058 | |
Tssr30005 | 3 | 5 | + | TSS region | transcription start site region 30005 | |
Tssr30006 | 3 | 28 | + | TSS region | transcription start site region 30006 | |
Tssr30007 | 3 | 16 | + | TSS region | transcription start site region 30007 | |
Tssr30008 | 3 | 11 | + | TSS region | transcription start site region 30008 | |
Cpgi13388 | 3 | 241 | CpG island | CpG island 13388 | ||
Tssr30009 | 3 | 11 | + | TSS region | transcription start site region 30009 | |
Tssr30010 | 3 | 26 | + | TSS region | transcription start site region 30010 | |
Tssr30011 | 3 | 12 | + | TSS region | transcription start site region 30011 | |
Tssr30012 | 3 | 20 | + | TSS region | transcription start site region 30012 | |
Tssr30013 | 3 | 14 | + | TSS region | transcription start site region 30013 | |
Rxfp4 | 3 | 1244 | - | protein coding gene | relaxin family peptide receptor 4 | |
Gm43714 | 3 | 1373 | - | antisense lncRNA gene | predicted gene 43714 | |
Tssr30014 | 3 | 18 | + | TSS region | transcription start site region 30014 | |
Cpgi13389 | 3 | 1235 | CpG island | CpG island 13389 | ||
Tssr30015 | 3 | 11 | + | TSS region | transcription start site region 30015 | |
Tssr30016 | 3 | 50 | + | TSS region | transcription start site region 30016 | |
Khdc4 | 3 | 27121 | + | protein coding gene | KH domain containing 4, pre-mRNA splicing factor | |
Gm25820 | 3 | 126 | + | snoRNA gene | predicted gene, 25820 | |
Tssr30017 | 3 | 5 | + | TSS region | transcription start site region 30017 | |
Gm25945 | 3 | 134 | + | snoRNA gene | predicted gene, 25945 | |
Cpgi13390 | 3 | 496 | CpG island | CpG island 13390 | ||
Tssr30018 | 3 | 45 | + | TSS region | transcription start site region 30018 | |
Rit1 | 3 | 14207 | + | protein coding gene | Ras-like without CAAX 1 | |
Tssr30019 | 3 | 21 | + | TSS region | transcription start site region 30019 | |
Tssr30020 | 3 | 5 | + | TSS region | transcription start site region 30020 | |
Gm17146 | 3 | 580 | + | antisense lncRNA gene | predicted gene 17146 | |
Gm10253 | 3 | 939 | - | unclassified gene | predicted gene 10253 | |
Syt11 | 3 | 30460 | - | protein coding gene | synaptotagmin XI | |
Tssr34059 | 3 | 13 | - | TSS region | transcription start site region 34059 | |
Tssr34060 | 3 | 12 | - | TSS region | transcription start site region 34060 |