Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:84196426-86187518

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176 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trim2 3 84160439 to 84305841 145402 - protein coding gene tripartite motif-containing 2
Tssr33851 3 84220835 to 84220846 11 - TSS region transcription start site region 33851
Tssr33852 3 84220853 to 84220896 43 - TSS region transcription start site region 33852
Gm40078 3 84228694 to 84247037 18343 + lncRNA gene predicted gene, 40078
n-TGgcc9 3 84229011 to 84229081 70 - tRNA gene nuclear encoded tRNA glycine 9 (anticodon GCC)
Cpgi13307 3 84259141 to 84260022 881 CpG island CpG island 13307
Tssr33853 3 84259555 to 84259571 16 - TSS region transcription start site region 33853
Tssr33854 3 84259584 to 84259596 12 - TSS region transcription start site region 33854
Tssr33855 3 84259616 to 84259633 17 - TSS region transcription start site region 33855
Tssr33856 3 84259658 to 84259699 41 - TSS region transcription start site region 33856
Tssr33857 3 84259700 to 84259728 28 - TSS region transcription start site region 33857
Tssr33858 3 84259736 to 84259787 51 - TSS region transcription start site region 33858
Tssr33859 3 84259836 to 84259847 11 - TSS region transcription start site region 33859
Tssr33860 3 84259918 to 84259937 19 - TSS region transcription start site region 33860
Tssr33861 3 84270704 to 84270713 9 - TSS region transcription start site region 33861
Tssr33862 3 84270718 to 84270735 17 - TSS region transcription start site region 33862
Tssr33863 3 84270742 to 84270775 33 - TSS region transcription start site region 33863
Tssr33864 3 84270782 to 84270794 12 - TSS region transcription start site region 33864
Cpgi13308 3 84304299 to 84305586 1287 CpG island CpG island 13308
Tssr33865 3 84304647 to 84304660 13 - TSS region transcription start site region 33865
Tssr33866 3 84304678 to 84304692 14 - TSS region transcription start site region 33866
Tssr33867 3 84304733 to 84304753 20 - TSS region transcription start site region 33867
Tssr33868 3 84304762 to 84304782 20 - TSS region transcription start site region 33868
Tssr33869 3 84305385 to 84305456 71 - TSS region transcription start site region 33869
Cpgi13309 3 84334732 to 84335084 352 CpG island CpG island 13309
Tssr29732 3 84335559 to 84335574 15 + TSS region transcription start site region 29732
Cpgi13310 3 84345148 to 84345361 213 CpG island CpG island 13310
4930565D16Rik 3 84349376 to 84379921 30545 - lincRNA gene RIKEN cDNA 4930565D16 gene
Fhdc1 3 84442198 to 84480429 38231 - protein coding gene FH2 domain containing 1
Cpgi13311 3 84444710 to 84445278 568 CpG island CpG island 13311
Tssr33870 3 84450770 to 84450771 1 - TSS region transcription start site region 33870
Tssr29733 3 84473927 to 84473943 16 + TSS region transcription start site region 29733
Cpgi13312 3 84479078 to 84481042 1964 CpG island CpG island 13312
Tssr33871 3 84479418 to 84479476 58 - TSS region transcription start site region 33871
Tssr29734 3 84479515 to 84479547 32 + TSS region transcription start site region 29734
Tssr29735 3 84480271 to 84480298 27 + TSS region transcription start site region 29735
Tssr33872 3 84480419 to 84480456 37 - TSS region transcription start site region 33872
Tssr33873 3 84480461 to 84480470 9 - TSS region transcription start site region 33873
Tssr29736 3 84480539 to 84480568 29 + TSS region transcription start site region 29736
Arfip1 3 84496093 to 84582625 86532 - protein coding gene ADP-ribosylation factor interacting protein 1
Gm37240 3 84496426 to 85887518 1391092 - protein coding gene predicted gene, 37240
Gm8813 3 84552858 to 84553452 594 - pseudogene predicted gene 8813
Gm38241 3 84556890 to 84557787 897 - pseudogene predicted gene, 38241
Cpgi13313 3 84582025 to 84583361 1336 CpG island CpG island 13313
Tssr33874 3 84582476 to 84582522 46 - TSS region transcription start site region 33874
Tssr33875 3 84582616 to 84582699 83 - TSS region transcription start site region 33875
Tssr33876 3 84582743 to 84582754 11 - TSS region transcription start site region 33876
Tssr29737 3 84593547 to 84593563 16 + TSS region transcription start site region 29737
Tigd4 3 84593574 to 84597032 3458 + protein coding gene tigger transposable element derived 4
Cpgi13314 3 84595045 to 84595330 285 CpG island CpG island 13314
Gm46836 3 84604056 to 84616170 12114 + lncRNA gene predicted gene, 46836
Tssr33877 3 84641482 to 84641486 4 - TSS region transcription start site region 33877
Cpgi13315 3 84666152 to 84666487 335 CpG island CpG island 13315
Tmem154 3 84666192 to 84704575 38383 + protein coding gene transmembrane protein 154
Tssr29738 3 84666229 to 84666288 59 + TSS region transcription start site region 29738
Tssr29739 3 84666304 to 84666354 50 + TSS region transcription start site region 29739
Cpgi13316 3 84732251 to 84732447 196 CpG island CpG island 13316
D3Mit139 3 84736136 to 84736220 84 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 139
Gm40079 3 84744975 to 84792206 47231 + lncRNA gene predicted gene, 40079
D3Mit340 3 84798887 to 84798999 112 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 340
Cpgi13317 3 84813868 to 84815905 2037 CpG island CpG island 13317
Tssr29740 3 84814583 to 84814658 75 + TSS region transcription start site region 29740
Fbxw7 3 84815268 to 84979198 163930 + protein coding gene F-box and WD-40 domain protein 7
Tssr29741 3 84817306 to 84817312 6 + TSS region transcription start site region 29741
Tssr29742 3 84829786 to 84829790 4 + TSS region transcription start site region 29742
Gm40080 3 84841973 to 84884842 42869 - lncRNA gene predicted gene, 40080
Tssr29743 3 84843226 to 84843236 10 + TSS region transcription start site region 29743
Tssr29744 3 84858821 to 84858826 5 + TSS region transcription start site region 29744
Tssr29745 3 84869478 to 84869485 7 + TSS region transcription start site region 29745
Gm37726 3 84873891 to 84877776 3885 + unclassified gene predicted gene, 37726
Tssr33878 3 84875518 to 84875529 11 - TSS region transcription start site region 33878
Tssr29746 3 84905896 to 84905908 12 + TSS region transcription start site region 29746
Tssr29747 3 84912471 to 84912483 12 + TSS region transcription start site region 29747
Tssr29748 3 84912553 to 84912572 19 + TSS region transcription start site region 29748
Gm46808 3 84912897 to 84913430 533 - pseudogene predicted gene, 46808
Tssr33879 3 84913557 to 84913565 8 - TSS region transcription start site region 33879
Tssr29749 3 84918267 to 84918273 6 + TSS region transcription start site region 29749
Tssr29750 3 84925455 to 84925472 17 + TSS region transcription start site region 29750
Tssr29751 3 84925476 to 84925488 12 + TSS region transcription start site region 29751
Tssr29752 3 84952167 to 84952186 19 + TSS region transcription start site region 29752
Tssr29753 3 84952188 to 84952200 12 + TSS region transcription start site region 29753
Tssr29754 3 84952203 to 84952230 27 + TSS region transcription start site region 29754
Tssr29755 3 84952269 to 84952291 22 + TSS region transcription start site region 29755
Tssr29756 3 84952333 to 84952409 76 + TSS region transcription start site region 29756
Tssr29757 3 84952427 to 84952435 8 + TSS region transcription start site region 29757
Tssr29758 3 84952457 to 84952474 17 + TSS region transcription start site region 29758
Tssr29759 3 84952489 to 84952500 11 + TSS region transcription start site region 29759
Tssr29760 3 84952523 to 84952538 15 + TSS region transcription start site region 29760
Fbxw7as1 3 84965056 to 84965580 524 - antisense lncRNA gene F-box and WD-40 domain protein 7 antisense transcript 1
Tssr29761 3 84977566 to 84977595 29 + TSS region transcription start site region 29761
Tssr29762 3 84977946 to 84977961 15 + TSS region transcription start site region 29762
Tssr29763 3 84978129 to 84978133 4 + TSS region transcription start site region 29763
Gm30944 3 85021687 to 85028574 6887 + lncRNA gene predicted gene, 30944
Tssr33880 3 85037954 to 85037956 2 - TSS region transcription start site region 33880
Gm30991 3 85049140 to 85107896 58756 + lncRNA gene predicted gene, 30991
Gm31096 3 85114984 to 85122505 7521 - lncRNA gene predicted gene, 31096
Gm38041 3 85152036 to 85152696 660 - pseudogene predicted gene, 38041
Cpgi13318 3 85186652 to 85186964 312 CpG island CpG island 13318
Gm38313 3 85195182 to 85196447 1265 - unclassified gene predicted gene, 38313
Cpgi13319 3 85280539 to 85280824 285 CpG island CpG island 13319
D3Mit281 3 85284759 to 85284876 117 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 281
1700036G14Rik 3 85317519 to 85332027 14508 + antisense lncRNA gene RIKEN cDNA 1700036G14 gene
Gm31210 3 85342121 to 85343407 1286 + lncRNA gene predicted gene, 31210
Gm31359 3 85391545 to 85402099 10554 - lncRNA gene predicted gene, 31359
Gm42813 3 85397524 to 85428128 30604 - lincRNA gene predicted gene 42813
D3Mit73 3 85399196 to 85399341 145 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 73
Gm31304 3 85405628 to 85410345 4717 + lncRNA gene predicted gene, 31304
Gm31419 3 85427272 to 85491799 64527 - lncRNA gene predicted gene, 31419
Gm45790 3 85435187 to 85466128 30941 - lincRNA gene predicted gene 45790
Mir466k 3 85467377 to 85467498 121 + miRNA gene microRNA 466k
Gm3740 3 85529890 to 85573993 44103 - unclassified gene predicted gene 3740
Tssr33881 3 85533262 to 85533283 21 - TSS region transcription start site region 33881
Gm42812 3 85544316 to 85553389 9073 - lincRNA gene predicted gene 42812
Gm15535 3 85556046 to 85573945 17899 - sense intronic lncRNA gene predicted gene 15535
Cpgi13320 3 85573924 to 85574392 468 CpG island CpG island 13320
Tssr29764 3 85574109 to 85574148 39 + TSS region transcription start site region 29764
Gatb 3 85574119 to 85655622 81503 + protein coding gene glutamyl-tRNA(Gln) amidotransferase, subunit B
Gm46809 3 85577513 to 85589826 12313 + lncRNA gene predicted gene, 46809
Tssr29765 3 85581133 to 85581148 15 + TSS region transcription start site region 29765
Tssr29766 3 85608323 to 85608336 13 + TSS region transcription start site region 29766
Fam160a1 3 85660063 to 85785302 125239 - protein coding gene family with sequence similarity 160, member A1
Tssr29767 3 85712319 to 85712320 1 + TSS region transcription start site region 29767
Gm40082 3 85712729 to 85717762 5033 + lncRNA gene predicted gene, 40082
Tssr33882 3 85778122 to 85778126 4 - TSS region transcription start site region 33882
Gm19068 3 85785233 to 85786000 767 + pseudogene predicted gene, 19068
D3Mit211 3 85826313 to 85826408 95 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 211
Glt28d2 3 85869849 to 85887516 17667 - protein coding gene glycosyltransferase 28 domain containing 2
Tssr923 3 85879035 to 85879038 3 + TSS region transcription start site region 923
Cpgi13321 3 85886937 to 85888029 1092 CpG island CpG island 13321
Tssr33883 3 85887305 to 85887316 11 - TSS region transcription start site region 33883
Tssr33884 3 85887342 to 85887355 13 - TSS region transcription start site region 33884
Tssr33885 3 85887361 to 85887374 13 - TSS region transcription start site region 33885
Tssr33886 3 85887387 to 85887412 25 - TSS region transcription start site region 33886
Tssr33887 3 85887413 to 85887456 43 - TSS region transcription start site region 33887
Tssr33888 3 85887472 to 85887499 27 - TSS region transcription start site region 33888
4933425M03Rik 3 85887691 to 85889234 1543 + unclassified gene RIKEN cDNA 4933425M03 gene
Tssr924 3 85887812 to 85887825 13 + TSS region transcription start site region 924
Tssr33889 3 85894909 to 85894917 8 - TSS region transcription start site region 33889
Gm26204 3 85908353 to 85908459 106 - snRNA gene predicted gene, 26204
Tssr29768 3 85914603 to 85914604 1 + TSS region transcription start site region 29768
Gm38030 3 85914643 to 85915117 474 + pseudogene predicted gene, 38030
Tssr29769 3 85915703 to 85915735 32 + TSS region transcription start site region 29769
Gm9790 3 85915783 to 85916070 287 + pseudogene predicted gene 9790
Gm25876 3 85950888 to 85951006 118 + snoRNA gene predicted gene, 25876
Gm24501 3 85962771 to 85962832 61 - snRNA gene predicted gene, 24501
Gm27811 3 85962847 to 85962910 63 - snRNA gene predicted gene, 27811
Cpgi13322 3 85970785 to 85971908 1123 CpG island CpG island 13322
Tssr29770 3 85971070 to 85971175 105 + TSS region transcription start site region 29770
Sh3d19 3 85971109 to 86130526 159417 + protein coding gene SH3 domain protein D19
Tssr29771 3 85971221 to 85971236 15 + TSS region transcription start site region 29771
Prss48 3 85993810 to 86002491 8681 - protein coding gene protease, serine 48
Tssr29772 3 85998867 to 85998871 4 + TSS region transcription start site region 29772
Tssr33890 3 86002495 to 86002507 12 - TSS region transcription start site region 33890
Tssr33891 3 86002515 to 86002535 20 - TSS region transcription start site region 33891
Tssr29773 3 86011590 to 86011614 24 + TSS region transcription start site region 29773
Tssr29774 3 86017231 to 86017245 14 + TSS region transcription start site region 29774
Tssr29775 3 86038837 to 86038891 54 + TSS region transcription start site region 29775
Tssr29776 3 86040531 to 86040571 40 + TSS region transcription start site region 29776
Tssr29777 3 86040805 to 86040825 20 + TSS region transcription start site region 29777
Elads2 3 86083297 to 86083297 0 QTL ENU induced lung adenoma susceptibility 2
Gm25188 3 86100534 to 86100655 121 + snoRNA gene predicted gene, 25188
Tssr29778 3 86104024 to 86104063 39 + TSS region transcription start site region 29778
Tssr29779 3 86104199 to 86104217 18 + TSS region transcription start site region 29779
Rps3a1 3 86137940 to 86142668 4728 - protein coding gene ribosomal protein S3A1
Snord73a 3 86138791 to 86138858 67 - snoRNA gene small nucleolar RNA, C/D box U73A
Rnu73b 3 86140617 to 86140687 70 - snoRNA gene U73B small nuclear RNA
Cpgi13323 3 86141834 to 86143091 1257 CpG island CpG island 13323
Tssr33892 3 86142593 to 86142636 43 - TSS region transcription start site region 33892
Tssr33893 3 86142642 to 86142658 16 - TSS region transcription start site region 33893
Tssr33894 3 86142684 to 86142689 5 - TSS region transcription start site region 33894
Gm37933 3 86142757 to 86145545 2788 + lincRNA gene predicted gene, 37933
Tssr29780 3 86143068 to 86143094 26 + TSS region transcription start site region 29780
Tssr29781 3 86143131 to 86143159 28 + TSS region transcription start site region 29781
Gm37493 3 86144937 to 86145369 432 - pseudogene predicted gene, 37493
D3Mit98 3 86181501 to 86181612 111 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 98
Eih5 3 157139788 to 85418436 -71721352 QTL ethanol induced hypothermia 5