Gene symbol | Chromo- some |
Coordinates (bp, mm10) | Size (bp) | Strand | Feature Type | Gene name |
---|---|---|---|---|---|---|
Lvrq5 | 3 | 73093478 | QTL | liver weight QTL 5 | ||
Splq6 | 3 | 73093478 | QTL | spleen weight QTL 6 | ||
Lgq3 | 3 | 73093478 | QTL | late growth QTL 3 | ||
Hrtpq1 | 3 | 73093478 | QTL | heart weight percentage QTL 1 | ||
Lgaq4 | 3 | 73093478 | QTL | late growth adjusted QTL 4 | ||
W10q3 | 3 | 73093478 | QTL | weight 10 weeks QTL 3 | ||
D3Mit72 | 3 | 137 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 72 | ||
Cia5 | 3 | 137 | QTL | collagen induced arthritis QTL 5 | ||
D3Mit174 | 3 | 140 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 174 | ||
D3Mit97 | 3 | 115 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 97 | ||
Cpgi13297 | 3 | 156 | CpG island | CpG island 13297 | ||
D3Mit212 | 3 | 120 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 212 | ||
Dchs2 | 3 | 2513 | + | protein coding gene | dachsous cadherin related 2 | |
Gm38096 | 3 | 2388 | + | lincRNA gene | predicted gene, 38096 | |
1700028M03Rik | 3 | 18751 | - | lincRNA gene | RIKEN cDNA 1700028M03 gene | |
Gm40076 | 3 | 4760 | - | lncRNA gene | predicted gene, 40076 | |
Tssr33827 | 3 | 21 | - | TSS region | transcription start site region 33827 | |
D3Mit246 | 3 | 249 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 246 | ||
Gm22342 | 3 | 297 | - | unclassified non-coding RNA gene | predicted gene, 22342 | |
Tssr29717 | 3 | 6 | + | TSS region | transcription start site region 29717 | |
Rpl28-ps2 | 3 | 475 | + | pseudogene | ribosomal protein L28, pseudogene 2 | |
Gm24584 | 3 | 106 | + | snRNA gene | predicted gene, 24584 | |
Gm30293 | 3 | 8011 | - | lncRNA gene | predicted gene, 30293 | |
Cpgi13298 | 3 | 576 | CpG island | CpG island 13298 | ||
Cpgi13299 | 3 | 1321 | CpG island | CpG island 13299 | ||
Tssr29718 | 3 | 14 | + | TSS region | transcription start site region 29718 | |
Tssr29719 | 3 | 31 | + | TSS region | transcription start site region 29719 | |
Sfrp2 | 3 | 7995 | + | protein coding gene | secreted frizzled-related protein 2 | |
Tssr29720 | 3 | 11 | + | TSS region | transcription start site region 29720 | |
Tssr29721 | 3 | 5 | + | TSS region | transcription start site region 29721 | |
Tssr29722 | 3 | 11 | + | TSS region | transcription start site region 29722 | |
Tssr29723 | 3 | 11 | + | TSS region | transcription start site region 29723 | |
Tssr29724 | 3 | 11 | + | TSS region | transcription start site region 29724 | |
Cpgi13300 | 3 | 370 | CpG island | CpG island 13300 | ||
Tssr33828 | 3 | 20 | - | TSS region | transcription start site region 33828 | |
Tssr29725 | 3 | 13 | + | TSS region | transcription start site region 29725 | |
Gm26771 | 3 | 16103 | - | antisense lncRNA gene | predicted gene, 26771 | |
Tssr33829 | 3 | 4 | - | TSS region | transcription start site region 33829 | |
Cpgi13301 | 3 | 631 | CpG island | CpG island 13301 | ||
Tssr33830 | 3 | 21 | - | TSS region | transcription start site region 33830 | |
Tssr33831 | 3 | 19 | - | TSS region | transcription start site region 33831 | |
Gm7115 | 3 | 20748 | + | pseudogene | predicted gene 7115 | |
Tlr2 | 3 | 5495 | - | protein coding gene | toll-like receptor 2 | |
Cpgi13302 | 3 | 184 | CpG island | CpG island 13302 | ||
Tssr33832 | 3 | 13 | - | TSS region | transcription start site region 33832 | |
Tssr33833 | 3 | 85 | - | TSS region | transcription start site region 33833 | |
Cpgi13303 | 3 | 646 | CpG island | CpG island 13303 | ||
Tssr918 | 3 | 46 | - | TSS region | transcription start site region 918 | |
Tssr919 | 3 | 5 | - | TSS region | transcription start site region 919 | |
Tssr33834 | 3 | 13 | - | TSS region | transcription start site region 33834 | |
Tssr33835 | 3 | 38 | - | TSS region | transcription start site region 33835 | |
Tssr920 | 3 | 31 | - | TSS region | transcription start site region 920 | |
Tssr29726 | 3 | 28 | + | TSS region | transcription start site region 29726 | |
Tssr33836 | 3 | 6 | - | TSS region | transcription start site region 33836 | |
Tssr921 | 3 | 11 | - | TSS region | transcription start site region 921 | |
Tssr33837 | 3 | 11 | - | TSS region | transcription start site region 33837 | |
Tssr29727 | 3 | 49 | + | TSS region | transcription start site region 29727 | |
Tmem131l | 3 | 141977 | - | protein coding gene | transmembrane 131 like | |
Tssr33838 | 3 | 5 | - | TSS region | transcription start site region 33838 | |
4930509B17Rik | 3 | 843 | unclassified gene | RIKEN cDNA 4930509B17 gene | ||
Cpgi13304 | 3 | 1931 | CpG island | CpG island 13304 | ||
Tssr29728 | 3 | 4 | + | TSS region | transcription start site region 29728 | |
Tssr33839 | 3 | 30 | - | TSS region | transcription start site region 33839 | |
Tssr33840 | 3 | 47 | - | TSS region | transcription start site region 33840 | |
Tssr33841 | 3 | 20 | - | TSS region | transcription start site region 33841 | |
Gm30352 | 3 | 11879 | + | lncRNA gene | predicted gene, 30352 | |
Tssr33842 | 3 | 7 | - | TSS region | transcription start site region 33842 | |
Tssr33843 | 3 | 14 | - | TSS region | transcription start site region 33843 | |
Tssr33844 | 3 | 29 | - | TSS region | transcription start site region 33844 | |
Tssr33845 | 3 | 19 | - | TSS region | transcription start site region 33845 | |
Gm36981 | 3 | 4484 | - | unclassified non-coding RNA gene | predicted gene, 36981 | |
Gm30458 | 3 | 1032 | + | lncRNA gene | predicted gene, 30458 | |
Tssr29729 | 3 | 6 | + | TSS region | transcription start site region 29729 | |
Mnd1 | 3 | 67853 | - | protein coding gene | meiotic nuclear divisions 1 | |
Cpgi13305 | 3 | 646 | CpG island | CpG island 13305 | ||
Tssr922 | 3 | 11 | + | TSS region | transcription start site region 922 | |
Tssr33846 | 3 | 19 | - | TSS region | transcription start site region 33846 | |
Tssr33847 | 3 | 34 | - | TSS region | transcription start site region 33847 | |
Trim2 | 3 | 145402 | - | protein coding gene | tripartite motif-containing 2 | |
Gm6525 | 3 | 555 | + | protein coding gene | predicted pseudogene 6525 | |
Tssr29730 | 3 | 24 | + | TSS region | transcription start site region 29730 | |
Tssr29731 | 3 | 37 | + | TSS region | transcription start site region 29731 | |
Cpgi13306 | 3 | 882 | CpG island | CpG island 13306 | ||
Tssr33848 | 3 | 11 | - | TSS region | transcription start site region 33848 | |
Tssr33849 | 3 | 13 | - | TSS region | transcription start site region 33849 | |
Tssr33850 | 3 | 73 | - | TSS region | transcription start site region 33850 | |
Tssr33851 | 3 | 11 | - | TSS region | transcription start site region 33851 | |
Tssr33852 | 3 | 43 | - | TSS region | transcription start site region 33852 | |
Gm40078 | 3 | 18343 | + | lncRNA gene | predicted gene, 40078 | |
n-TGgcc9 | 3 | 70 | - | tRNA gene | nuclear encoded tRNA glycine 9 (anticodon GCC) | |
Cpgi13307 | 3 | 881 | CpG island | CpG island 13307 | ||
Tssr33853 | 3 | 16 | - | TSS region | transcription start site region 33853 | |
Tssr33854 | 3 | 12 | - | TSS region | transcription start site region 33854 | |
Tssr33855 | 3 | 17 | - | TSS region | transcription start site region 33855 | |
Tssr33856 | 3 | 41 | - | TSS region | transcription start site region 33856 | |
Tssr33857 | 3 | 28 | - | TSS region | transcription start site region 33857 | |
Tssr33858 | 3 | 51 | - | TSS region | transcription start site region 33858 | |
Tssr33859 | 3 | 11 | - | TSS region | transcription start site region 33859 | |
Tssr33860 | 3 | 19 | - | TSS region | transcription start site region 33860 | |
Tssr33861 | 3 | 9 | - | TSS region | transcription start site region 33861 | |
Tssr33862 | 3 | 17 | - | TSS region | transcription start site region 33862 | |
Tssr33863 | 3 | 33 | - | TSS region | transcription start site region 33863 | |
Tssr33864 | 3 | 12 | - | TSS region | transcription start site region 33864 | |
Cpgi13308 | 3 | 1287 | CpG island | CpG island 13308 | ||
Tssr33865 | 3 | 13 | - | TSS region | transcription start site region 33865 | |
Tssr33866 | 3 | 14 | - | TSS region | transcription start site region 33866 | |
Tssr33867 | 3 | 20 | - | TSS region | transcription start site region 33867 | |
Tssr33868 | 3 | 20 | - | TSS region | transcription start site region 33868 | |
Tssr33869 | 3 | 71 | - | TSS region | transcription start site region 33869 | |
Cpgi13309 | 3 | 352 | CpG island | CpG island 13309 | ||
Tssr29732 | 3 | 15 | + | TSS region | transcription start site region 29732 | |
Cpgi13310 | 3 | 213 | CpG island | CpG island 13310 | ||
4930565D16Rik | 3 | 30545 | - | lincRNA gene | RIKEN cDNA 4930565D16 gene | |
Fhdc1 | 3 | 38231 | - | protein coding gene | FH2 domain containing 1 | |
Cpgi13311 | 3 | 568 | CpG island | CpG island 13311 | ||
Tssr33870 | 3 | 1 | - | TSS region | transcription start site region 33870 | |
Tssr29733 | 3 | 16 | + | TSS region | transcription start site region 29733 | |
Cpgi13312 | 3 | 1964 | CpG island | CpG island 13312 | ||
Tssr33871 | 3 | 58 | - | TSS region | transcription start site region 33871 | |
Tssr29734 | 3 | 32 | + | TSS region | transcription start site region 29734 | |
Tssr29735 | 3 | 27 | + | TSS region | transcription start site region 29735 | |
Tssr33872 | 3 | 37 | - | TSS region | transcription start site region 33872 | |
Tssr33873 | 3 | 9 | - | TSS region | transcription start site region 33873 | |
Tssr29736 | 3 | 29 | + | TSS region | transcription start site region 29736 | |
Arfip1 | 3 | 86532 | - | protein coding gene | ADP-ribosylation factor interacting protein 1 | |
Gm37240 | 3 | 1391092 | - | protein coding gene | predicted gene, 37240 | |
Gm8813 | 3 | 594 | - | pseudogene | predicted gene 8813 | |
Gm38241 | 3 | 897 | - | pseudogene | predicted gene, 38241 | |
Cpgi13313 | 3 | 1336 | CpG island | CpG island 13313 | ||
Tssr33874 | 3 | 46 | - | TSS region | transcription start site region 33874 | |
Tssr33875 | 3 | 83 | - | TSS region | transcription start site region 33875 | |
Tssr33876 | 3 | 11 | - | TSS region | transcription start site region 33876 | |
Tssr29737 | 3 | 16 | + | TSS region | transcription start site region 29737 | |
Tigd4 | 3 | 3458 | + | protein coding gene | tigger transposable element derived 4 | |
Cpgi13314 | 3 | 285 | CpG island | CpG island 13314 | ||
Gm46836 | 3 | 12114 | + | lncRNA gene | predicted gene, 46836 | |
Tssr33877 | 3 | 4 | - | TSS region | transcription start site region 33877 | |
Cpgi13315 | 3 | 335 | CpG island | CpG island 13315 | ||
Tmem154 | 3 | 38383 | + | protein coding gene | transmembrane protein 154 | |
Tssr29738 | 3 | 59 | + | TSS region | transcription start site region 29738 | |
Tssr29739 | 3 | 50 | + | TSS region | transcription start site region 29739 | |
Cpgi13316 | 3 | 196 | CpG island | CpG island 13316 | ||
D3Mit139 | 3 | 84 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 139 | ||
Gm40079 | 3 | 47231 | + | lncRNA gene | predicted gene, 40079 | |
D3Mit340 | 3 | 112 | DNA segment | DNA Segment, Chr 3 Massachusetts Institute of Technology 340 | ||
Cpgi13317 | 3 | 2037 | CpG island | CpG island 13317 | ||
Tssr29740 | 3 | 75 | + | TSS region | transcription start site region 29740 | |
Fbxw7 | 3 | 163930 | + | protein coding gene | F-box and WD-40 domain protein 7 | |
Tssr29741 | 3 | 6 | + | TSS region | transcription start site region 29741 | |
Tssr29742 | 3 | 4 | + | TSS region | transcription start site region 29742 | |
Gm40080 | 3 | 42869 | - | lncRNA gene | predicted gene, 40080 | |
Tssr29743 | 3 | 10 | + | TSS region | transcription start site region 29743 | |
Tssr29744 | 3 | 5 | + | TSS region | transcription start site region 29744 | |
Tssr29745 | 3 | 7 | + | TSS region | transcription start site region 29745 | |
Gm37726 | 3 | 3885 | + | unclassified gene | predicted gene, 37726 | |
Tssr33878 | 3 | 11 | - | TSS region | transcription start site region 33878 | |
Tssr29746 | 3 | 12 | + | TSS region | transcription start site region 29746 | |
Tssr29747 | 3 | 12 | + | TSS region | transcription start site region 29747 | |
Tssr29748 | 3 | 19 | + | TSS region | transcription start site region 29748 | |
Gm46808 | 3 | 533 | - | pseudogene | predicted gene, 46808 | |
Tssr33879 | 3 | 8 | - | TSS region | transcription start site region 33879 | |
Tssr29749 | 3 | 6 | + | TSS region | transcription start site region 29749 | |
Tssr29750 | 3 | 17 | + | TSS region | transcription start site region 29750 | |
Tssr29751 | 3 | 12 | + | TSS region | transcription start site region 29751 | |
Tssr29752 | 3 | 19 | + | TSS region | transcription start site region 29752 | |
Tssr29753 | 3 | 12 | + | TSS region | transcription start site region 29753 | |
Tssr29754 | 3 | 27 | + | TSS region | transcription start site region 29754 | |
Tssr29755 | 3 | 22 | + | TSS region | transcription start site region 29755 | |
Tssr29756 | 3 | 76 | + | TSS region | transcription start site region 29756 | |
Tssr29757 | 3 | 8 | + | TSS region | transcription start site region 29757 | |
Tssr29758 | 3 | 17 | + | TSS region | transcription start site region 29758 | |
Tssr29759 | 3 | 11 | + | TSS region | transcription start site region 29759 | |
Tssr29760 | 3 | 15 | + | TSS region | transcription start site region 29760 | |
Fbxw7as1 | 3 | 524 | - | antisense lncRNA gene | F-box and WD-40 domain protein 7 antisense transcript 1 | |
Tssr29761 | 3 | 29 | + | TSS region | transcription start site region 29761 | |
Tssr29762 | 3 | 15 | + | TSS region | transcription start site region 29762 | |
Tssr29763 | 3 | 4 | + | TSS region | transcription start site region 29763 | |
Gm30944 | 3 | 6887 | + | lncRNA gene | predicted gene, 30944 | |
Tssr33880 | 3 | 2 | - | TSS region | transcription start site region 33880 | |
Gm30991 | 3 | 58756 | + | lncRNA gene | predicted gene, 30991 | |
Gm31096 | 3 | 7521 | - | lncRNA gene | predicted gene, 31096 | |
Gm38041 | 3 | 660 | - | pseudogene | predicted gene, 38041 | |
Cpgi13318 | 3 | 312 | CpG island | CpG island 13318 | ||
Gm38313 | 3 | 1265 | - | unclassified gene | predicted gene, 38313 | |
Cpgi13319 | 3 | 285 | CpG island | CpG island 13319 | ||
D3Mit281 | 3 | 117 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 281 | ||
1700036G14Rik | 3 | 14508 | + | antisense lncRNA gene | RIKEN cDNA 1700036G14 gene | |
Gm31210 | 3 | 1286 | + | lncRNA gene | predicted gene, 31210 | |
Gm31359 | 3 | 10554 | - | lncRNA gene | predicted gene, 31359 | |
Gm42813 | 3 | 30604 | - | lincRNA gene | predicted gene 42813 | |
D3Mit73 | 3 | 145 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 73 | ||
Gm31304 | 3 | 4717 | + | lncRNA gene | predicted gene, 31304 | |
Gm31419 | 3 | 64527 | - | lncRNA gene | predicted gene, 31419 | |
Gm45790 | 3 | 30941 | - | lincRNA gene | predicted gene 45790 | |
Mir466k | 3 | 121 | + | miRNA gene | microRNA 466k | |
Gm3740 | 3 | 44103 | - | unclassified gene | predicted gene 3740 | |
Tssr33881 | 3 | 21 | - | TSS region | transcription start site region 33881 | |
Gm42812 | 3 | 9073 | - | lincRNA gene | predicted gene 42812 | |
Gm15535 | 3 | 17899 | - | sense intronic lncRNA gene | predicted gene 15535 | |
Cpgi13320 | 3 | 468 | CpG island | CpG island 13320 |