Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:83011145-92931150

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1878 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hrtpq1 3 10184161 to 83277639 73093478 QTL heart weight percentage QTL 1
Splq6 3 10184161 to 83277639 73093478 QTL spleen weight QTL 6
W10q3 3 10184161 to 83277639 73093478 QTL weight 10 weeks QTL 3
Lvrq5 3 10184161 to 83277639 73093478 QTL liver weight QTL 5
Lgaq4 3 10184161 to 83277639 73093478 QTL late growth adjusted QTL 4
Lgq3 3 10184161 to 83277639 73093478 QTL late growth QTL 3
Fgg 3 83007724 to 83015049 7325 + protein coding gene fibrinogen gamma chain
Tssr29653 3 83011346 to 83011364 18 + TSS region transcription start site region 29653
Tssr29654 3 83011379 to 83011421 42 + TSS region transcription start site region 29654
Tssr29655 3 83012768 to 83012775 7 + TSS region transcription start site region 29655
Tssr29656 3 83012833 to 83012857 24 + TSS region transcription start site region 29656
Tssr33799 3 83012839 to 83012856 17 - TSS region transcription start site region 33799
Tssr29657 3 83012898 to 83012916 18 + TSS region transcription start site region 29657
Tssr29658 3 83012932 to 83012943 11 + TSS region transcription start site region 29658
Tssr29659 3 83014133 to 83014153 20 + TSS region transcription start site region 29659
Tssr29660 3 83026147 to 83026162 15 + TSS region transcription start site region 29660
Fga 3 83026153 to 83033627 7474 + protein coding gene fibrinogen alpha chain
Tssr29661 3 83028541 to 83028548 7 + TSS region transcription start site region 29661
Tssr29662 3 83028561 to 83028597 36 + TSS region transcription start site region 29662
Tssr29663 3 83028603 to 83028614 11 + TSS region transcription start site region 29663
Tssr29664 3 83029077 to 83029097 20 + TSS region transcription start site region 29664
Tssr29665 3 83029105 to 83029136 31 + TSS region transcription start site region 29665
Tssr29666 3 83029161 to 83029172 11 + TSS region transcription start site region 29666
Tssr29667 3 83029197 to 83029215 18 + TSS region transcription start site region 29667
Tssr29668 3 83030198 to 83030209 11 + TSS region transcription start site region 29668
Tssr29669 3 83030242 to 83030259 17 + TSS region transcription start site region 29669
Tssr29670 3 83030286 to 83030296 10 + TSS region transcription start site region 29670
Tssr29671 3 83030830 to 83030845 15 + TSS region transcription start site region 29671
Tssr29672 3 83030933 to 83030938 5 + TSS region transcription start site region 29672
Tssr29673 3 83030961 to 83030985 24 + TSS region transcription start site region 29673
Tssr29674 3 83031010 to 83031019 9 + TSS region transcription start site region 29674
Tssr29675 3 83031020 to 83031025 5 + TSS region transcription start site region 29675
Tssr29676 3 83031030 to 83031039 9 + TSS region transcription start site region 29676
Tssr29677 3 83031047 to 83031054 7 + TSS region transcription start site region 29677
Tssr33800 3 83031102 to 83031123 21 - TSS region transcription start site region 33800
Tssr29678 3 83031126 to 83031129 3 + TSS region transcription start site region 29678
Tssr29679 3 83031170 to 83031188 18 + TSS region transcription start site region 29679
Tssr29680 3 83031193 to 83031212 19 + TSS region transcription start site region 29680
Tssr29681 3 83031295 to 83031314 19 + TSS region transcription start site region 29681
Tssr29682 3 83031318 to 83031345 27 + TSS region transcription start site region 29682
Tssr29683 3 83031361 to 83031376 15 + TSS region transcription start site region 29683
Tssr29684 3 83031386 to 83031415 29 + TSS region transcription start site region 29684
Tssr29685 3 83031427 to 83031461 34 + TSS region transcription start site region 29685
Tssr33801 3 83031447 to 83031486 39 - TSS region transcription start site region 33801
Tssr29686 3 83031493 to 83031550 57 + TSS region transcription start site region 29686
Tssr33802 3 83031583 to 83031610 27 - TSS region transcription start site region 33802
Tssr29687 3 83031591 to 83031603 12 + TSS region transcription start site region 29687
Tssr29688 3 83031615 to 83031628 13 + TSS region transcription start site region 29688
Tssr29689 3 83031641 to 83031652 11 + TSS region transcription start site region 29689
Tssr29690 3 83031671 to 83031680 9 + TSS region transcription start site region 29690
Tssr917 3 83031698 to 83031701 3 + TSS region transcription start site region 917
Tssr29691 3 83031717 to 83031730 13 + TSS region transcription start site region 29691
Tssr29692 3 83031733 to 83031748 15 + TSS region transcription start site region 29692
Tssr29693 3 83031764 to 83031775 11 + TSS region transcription start site region 29693
Tssr29694 3 83031797 to 83031821 24 + TSS region transcription start site region 29694
Tssr29695 3 83031823 to 83031834 11 + TSS region transcription start site region 29695
Tssr29696 3 83031836 to 83031855 19 + TSS region transcription start site region 29696
Tssr29697 3 83031860 to 83031882 22 + TSS region transcription start site region 29697
Tssr29698 3 83031997 to 83032032 35 + TSS region transcription start site region 29698
Tssr29699 3 83032079 to 83032089 10 + TSS region transcription start site region 29699
Tssr29700 3 83032092 to 83032100 8 + TSS region transcription start site region 29700
Tssr29701 3 83032124 to 83032132 8 + TSS region transcription start site region 29701
Gm40075 3 83037077 to 83038974 1897 - lncRNA gene predicted gene, 40075
D3Mit9.1 3 83037583 to 83037702 119 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 9.1
Tssr33803 3 83041017 to 83041024 7 - TSS region transcription start site region 33803
Fgb 3 83042246 to 83049863 7617 - protein coding gene fibrinogen beta chain
Tssr29702 3 83042420 to 83042444 24 + TSS region transcription start site region 29702
Tssr33804 3 83042455 to 83042468 13 - TSS region transcription start site region 33804
Tssr29703 3 83042462 to 83042479 17 + TSS region transcription start site region 29703
Tssr29704 3 83043219 to 83043250 31 + TSS region transcription start site region 29704
Tssr29705 3 83043319 to 83043349 30 + TSS region transcription start site region 29705
Tssr33805 3 83043396 to 83043407 11 - TSS region transcription start site region 33805
Tssr29706 3 83043401 to 83043438 37 + TSS region transcription start site region 29706
Tssr33806 3 83043460 to 83043477 17 - TSS region transcription start site region 33806
Tssr33807 3 83043795 to 83043805 10 - TSS region transcription start site region 33807
Tssr33808 3 83043866 to 83043877 11 - TSS region transcription start site region 33808
Tssr29707 3 83043871 to 83043879 8 + TSS region transcription start site region 29707
Tssr33809 3 83043882 to 83043909 27 - TSS region transcription start site region 33809
Tssr29708 3 83044210 to 83044236 26 + TSS region transcription start site region 29708
Tssr33810 3 83044247 to 83044313 66 - TSS region transcription start site region 33810
Tssr33811 3 83044912 to 83044966 54 - TSS region transcription start site region 33811
Tssr33812 3 83044996 to 83045001 5 - TSS region transcription start site region 33812
Tssr33813 3 83045005 to 83045059 54 - TSS region transcription start site region 33813
Tssr33814 3 83045970 to 83045973 3 - TSS region transcription start site region 33814
Tssr33815 3 83046075 to 83046081 6 - TSS region transcription start site region 33815
Tssr33816 3 83046105 to 83046143 38 - TSS region transcription start site region 33816
Tssr29709 3 83046118 to 83046135 17 + TSS region transcription start site region 29709
Tssr33817 3 83046153 to 83046189 36 - TSS region transcription start site region 33817
Tssr29710 3 83046642 to 83046659 17 + TSS region transcription start site region 29710
Tssr29711 3 83046664 to 83046676 12 + TSS region transcription start site region 29711
Tssr33818 3 83046675 to 83046683 8 - TSS region transcription start site region 33818
Tssr33819 3 83046686 to 83046714 28 - TSS region transcription start site region 33819
Tssr29712 3 83046689 to 83046716 27 + TSS region transcription start site region 29712
Tssr33820 3 83046722 to 83046739 17 - TSS region transcription start site region 33820
Tssr33821 3 83046740 to 83046758 18 - TSS region transcription start site region 33821
Tssr33822 3 83046778 to 83046792 14 - TSS region transcription start site region 33822
Tssr33823 3 83046797 to 83046808 11 - TSS region transcription start site region 33823
Tssr33824 3 83046819 to 83046846 27 - TSS region transcription start site region 33824
Tssr33825 3 83049114 to 83049129 15 - TSS region transcription start site region 33825
Tssr33826 3 83049797 to 83049817 20 - TSS region transcription start site region 33826
Cpgi13295 3 83055045 to 83056029 984 CpG island CpG island 13295
Tssr29713 3 83055516 to 83055565 49 + TSS region transcription start site region 29713
Plrg1 3 83055538 to 83072291 16753 + protein coding gene pleiotropic regulator 1
Tssr29714 3 83055575 to 83055585 10 + TSS region transcription start site region 29714
Tssr29715 3 83055594 to 83055609 15 + TSS region transcription start site region 29715
Gm10710 3 83125276 to 83129240 3964 - lincRNA gene predicted gene 10710
Cpgi13296 3 83127169 to 83129741 2572 CpG island CpG island 13296
Tssr29716 3 83127503 to 83127540 37 + TSS region transcription start site region 29716
D3Mit72 3 83139351 to 83139488 137 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 72
Cia5 3 83139351 to 83139488 137 QTL collagen induced arthritis QTL 5
D3Mit174 3 83213937 to 83214077 140 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 174
D3Mit97 3 83277524 to 83277639 115 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 97
Cpgi13297 3 83304775 to 83304931 156 CpG island CpG island 13297
D3Mit212 3 83317410 to 83317530 120 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 212
Dchs2 3 83353849 to 83356362 2513 + protein coding gene dachsous cadherin related 2
Gm38096 3 83403402 to 83405790 2388 + lincRNA gene predicted gene, 38096
1700028M03Rik 3 83555367 to 83574118 18751 - lincRNA gene RIKEN cDNA 1700028M03 gene
Gm40076 3 83596327 to 83601087 4760 - lncRNA gene predicted gene, 40076
Tssr33827 3 83601536 to 83601557 21 - TSS region transcription start site region 33827
D3Mit246 3 83614974 to 83615223 249 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 246
Gm22342 3 83634577 to 83634874 297 - unclassified non-coding RNA gene predicted gene, 22342
Tssr29717 3 83686675 to 83686681 6 + TSS region transcription start site region 29717
Rpl28-ps2 3 83686679 to 83687154 475 + pseudogene ribosomal protein L28, pseudogene 2
Gm24584 3 83702252 to 83702358 106 + snRNA gene predicted gene, 24584
Gm30293 3 83719356 to 83727367 8011 - lncRNA gene predicted gene, 30293
Cpgi13298 3 83764066 to 83764642 576 CpG island CpG island 13298
Cpgi13299 3 83765775 to 83767096 1321 CpG island CpG island 13299
Tssr29718 3 83766173 to 83766187 14 + TSS region transcription start site region 29718
Tssr29719 3 83766300 to 83766331 31 + TSS region transcription start site region 29719
Sfrp2 3 83766321 to 83774316 7995 + protein coding gene secreted frizzled-related protein 2
Tssr29720 3 83766602 to 83766613 11 + TSS region transcription start site region 29720
Tssr29721 3 83766616 to 83766621 5 + TSS region transcription start site region 29721
Tssr29722 3 83766628 to 83766639 11 + TSS region transcription start site region 29722
Tssr29723 3 83766661 to 83766672 11 + TSS region transcription start site region 29723
Tssr29724 3 83766979 to 83766990 11 + TSS region transcription start site region 29724
Cpgi13300 3 83773134 to 83773504 370 CpG island CpG island 13300
Tssr33828 3 83773173 to 83773193 20 - TSS region transcription start site region 33828
Tssr29725 3 83773847 to 83773860 13 + TSS region transcription start site region 29725
Gm26771 3 83773853 to 83789956 16103 - antisense lncRNA gene predicted gene, 26771
Tssr33829 3 83774669 to 83774673 4 - TSS region transcription start site region 33829
Cpgi13301 3 83789517 to 83790148 631 CpG island CpG island 13301
Tssr33830 3 83789940 to 83789961 21 - TSS region transcription start site region 33830
Tssr33831 3 83789973 to 83789992 19 - TSS region transcription start site region 33831
Gm7115 3 83811471 to 83832219 20748 + pseudogene predicted gene 7115
Tlr2 3 83836272 to 83841767 5495 - protein coding gene toll-like receptor 2
Cpgi13302 3 83836508 to 83836692 184 CpG island CpG island 13302
Tssr33832 3 83836854 to 83836867 13 - TSS region transcription start site region 33832
Tssr33833 3 83841085 to 83841170 85 - TSS region transcription start site region 33833
Cpgi13303 3 83841105 to 83841751 646 CpG island CpG island 13303
Tssr918 3 83841286 to 83841332 46 - TSS region transcription start site region 918
Tssr919 3 83841546 to 83841551 5 - TSS region transcription start site region 919
Tssr33834 3 83841555 to 83841568 13 - TSS region transcription start site region 33834
Tssr33835 3 83841575 to 83841613 38 - TSS region transcription start site region 33835
Tssr920 3 83841729 to 83841760 31 - TSS region transcription start site region 920
Tssr29726 3 83845003 to 83845031 28 + TSS region transcription start site region 29726
Tssr33836 3 83859742 to 83859748 6 - TSS region transcription start site region 33836
Tssr921 3 83863026 to 83863037 11 - TSS region transcription start site region 921
Tssr33837 3 83863064 to 83863075 11 - TSS region transcription start site region 33837
Tssr29727 3 83863253 to 83863302 49 + TSS region transcription start site region 29727
Tmem131l 3 83898205 to 84040182 141977 - protein coding gene transmembrane 131 like
Tssr33838 3 83980896 to 83980901 5 - TSS region transcription start site region 33838
4930509B17Rik 3 84028437 to 84029280 843 unclassified gene RIKEN cDNA 4930509B17 gene
Cpgi13304 3 84038940 to 84040871 1931 CpG island CpG island 13304
Tssr29728 3 84039378 to 84039382 4 + TSS region transcription start site region 29728
Tssr33839 3 84039875 to 84039905 30 - TSS region transcription start site region 33839
Tssr33840 3 84040100 to 84040147 47 - TSS region transcription start site region 33840
Tssr33841 3 84040151 to 84040171 20 - TSS region transcription start site region 33841
Gm30352 3 84040221 to 84052100 11879 + lncRNA gene predicted gene, 30352
Tssr33842 3 84040256 to 84040263 7 - TSS region transcription start site region 33842
Tssr33843 3 84040276 to 84040290 14 - TSS region transcription start site region 33843
Tssr33844 3 84040292 to 84040321 29 - TSS region transcription start site region 33844
Tssr33845 3 84041981 to 84042000 19 - TSS region transcription start site region 33845
Gm36981 3 84058968 to 84063452 4484 - unclassified non-coding RNA gene predicted gene, 36981
Gm30458 3 84061741 to 84062773 1032 + lncRNA gene predicted gene, 30458
Tssr29729 3 84071998 to 84072004 6 + TSS region transcription start site region 29729
Mnd1 3 84087933 to 84155786 67853 - protein coding gene meiotic nuclear divisions 1
Cpgi13305 3 84155316 to 84155962 646 CpG island CpG island 13305
Tssr922 3 84155521 to 84155532 11 + TSS region transcription start site region 922
Tssr33846 3 84155735 to 84155754 19 - TSS region transcription start site region 33846
Tssr33847 3 84155762 to 84155796 34 - TSS region transcription start site region 33847
Trim2 3 84160439 to 84305841 145402 - protein coding gene tripartite motif-containing 2
Gm6525 3 84174638 to 84175193 555 + protein coding gene predicted pseudogene 6525
Tssr29730 3 84180588 to 84180612 24 + TSS region transcription start site region 29730
Tssr29731 3 84189985 to 84190022 37 + TSS region transcription start site region 29731
Cpgi13306 3 84190404 to 84191286 882 CpG island CpG island 13306
Tssr33848 3 84191182 to 84191193 11 - TSS region transcription start site region 33848
Tssr33849 3 84191223 to 84191236 13 - TSS region transcription start site region 33849
Tssr33850 3 84191242 to 84191315 73 - TSS region transcription start site region 33850
Tssr33851 3 84220835 to 84220846 11 - TSS region transcription start site region 33851
Tssr33852 3 84220853 to 84220896 43 - TSS region transcription start site region 33852
Gm40078 3 84228694 to 84247037 18343 + lncRNA gene predicted gene, 40078
n-TGgcc9 3 84229011 to 84229081 70 - tRNA gene nuclear encoded tRNA glycine 9 (anticodon GCC)
Cpgi13307 3 84259141 to 84260022 881 CpG island CpG island 13307
Tssr33853 3 84259555 to 84259571 16 - TSS region transcription start site region 33853
Tssr33854 3 84259584 to 84259596 12 - TSS region transcription start site region 33854
Tssr33855 3 84259616 to 84259633 17 - TSS region transcription start site region 33855
Tssr33856 3 84259658 to 84259699 41 - TSS region transcription start site region 33856
Tssr33857 3 84259700 to 84259728 28 - TSS region transcription start site region 33857
Tssr33858 3 84259736 to 84259787 51 - TSS region transcription start site region 33858
Tssr33859 3 84259836 to 84259847 11 - TSS region transcription start site region 33859