Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:80859890-90243993

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1567 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lvrq5 3 10184161 to 83277639 73093478 QTL liver weight QTL 5
Hrtpq1 3 10184161 to 83277639 73093478 QTL heart weight percentage QTL 1
Splq6 3 10184161 to 83277639 73093478 QTL spleen weight QTL 6
Lgaq4 3 10184161 to 83277639 73093478 QTL late growth adjusted QTL 4
Lgq3 3 10184161 to 83277639 73093478 QTL late growth QTL 3
W10q3 3 10184161 to 83277639 73093478 QTL weight 10 weeks QTL 3
Glrb 3 80843599 to 80913660 70061 - protein coding gene glycine receptor, beta subunit
Tssr33772 3 80879696 to 80879715 19 - TSS region transcription start site region 33772
Gm18545 3 80885092 to 80886992 1900 + pseudogene predicted gene, 18545
Cpgi13282 3 80913070 to 80914238 1168 CpG island CpG island 13282
Tssr33773 3 80913542 to 80913666 124 - TSS region transcription start site region 33773
Gm42468 3 80962960 to 80971627 8667 + lincRNA gene predicted gene 42468
Gm29808 3 81000994 to 81001461 467 + pseudogene predicted gene, 29808
D3Dcr8 3 81029882 to 81029977 95 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 8
Gm42476 3 81032954 to 81033774 820 + lincRNA gene predicted gene 42476
Cpgi13283 3 81036232 to 81037827 1595 CpG island CpG island 13283
Tssr29617 3 81036360 to 81036371 11 + TSS region transcription start site region 29617
Pdgfc 3 81036416 to 81214040 177624 + protein coding gene platelet-derived growth factor, C polypeptide
Tssr29618 3 81036638 to 81036738 100 + TSS region transcription start site region 29618
Tssr29619 3 81036965 to 81037011 46 + TSS region transcription start site region 29619
Tssr29620 3 81037065 to 81037076 11 + TSS region transcription start site region 29620
Tssr29621 3 81037137 to 81037205 68 + TSS region transcription start site region 29621
Tssr29622 3 81037212 to 81037225 13 + TSS region transcription start site region 29622
Tssr29623 3 81037379 to 81037391 12 + TSS region transcription start site region 29623
Gm16000 3 81037408 to 81040437 3029 - antisense lncRNA gene predicted gene 16000
D3Mit245 3 81086398 to 81086547 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 245
D3Dcr9 3 81150097 to 81150193 96 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 9
D3Mit358 3 81150108 to 81150222 114 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology-358
D3Dcr10 3 81168399 to 81168497 98 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 10
Tssr29624 3 81208993 to 81209001 8 + TSS region transcription start site region 29624
D3Dcr11 3 81249103 to 81249198 95 DNA segment DNA Segment, Chr 3, Derry C. Roopenian 11
Gm37300 3 81405293 to 81405572 279 - pseudogene predicted gene, 37300
Gm4857 3 81556041 to 81556825 784 - pseudogene predicted gene 4857
Gm43346 3 81721676 to 81724030 2354 + lincRNA gene predicted gene 43346
A830029E22Rik 3 81802025 to 81805161 3136 + lincRNA gene RIKEN cDNA A830029E22 gene
Gm22531 3 81880727 to 81880866 139 + snoRNA gene predicted gene, 22531
Gm9989 3 81918008 to 81924463 6455 - lncRNA gene predicted gene 9989
Cpgi13284 3 81932569 to 81932843 274 CpG island CpG island 13284
Ctso 3 81932601 to 81956725 24124 + protein coding gene cathepsin O
Tssr29625 3 81932608 to 81932634 26 + TSS region transcription start site region 29625
Tssr29626 3 81932635 to 81932664 29 + TSS region transcription start site region 29626
Tssr29627 3 81932666 to 81932680 14 + TSS region transcription start site region 29627
Tdo2 3 81958412 to 81975728 17316 - protein coding gene tryptophan 2,3-dioxygenase
Tssr33774 3 81958611 to 81958620 9 - TSS region transcription start site region 33774
Tssr33775 3 81965101 to 81965105 4 - TSS region transcription start site region 33775
Tssr33776 3 81965137 to 81965159 22 - TSS region transcription start site region 33776
Tssr33777 3 81968283 to 81968285 2 - TSS region transcription start site region 33777
Tssr33778 3 81974543 to 81974550 7 - TSS region transcription start site region 33778
Tssr33779 3 81975742 to 81975760 18 - TSS region transcription start site region 33779
Tssr33780 3 81975859 to 81975861 2 - TSS region transcription start site region 33780
Asic5 3 81982293 to 82021233 38940 + protein coding gene acid-sensing (proton-gated) ion channel family member 5
Tssr29628 3 81995696 to 81995709 13 + TSS region transcription start site region 29628
D3Mit229 3 82019057 to 82019156 99 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 229
Gucy1b1 3 82032006 to 82074689 42683 - protein coding gene guanylate cyclase 1, soluble, beta 1
Cpgi13285 3 82046502 to 82046723 221 CpG island CpG island 13285
Cpgi13286 3 82073662 to 82074789 1127 CpG island CpG island 13286
Tssr33781 3 82074639 to 82074716 77 - TSS region transcription start site region 33781
Gucy1a1 3 82092427 to 82145789 53362 - protein coding gene guanylate cyclase 1, soluble, alpha 1
Tssr33782 3 82093456 to 82093470 14 - TSS region transcription start site region 33782
Tssr33783 3 82093714 to 82093727 13 - TSS region transcription start site region 33783
Mir7010 3 82106247 to 82106309 62 - miRNA gene microRNA 7010
Cpgi13287 3 82108815 to 82109008 193 CpG island CpG island 13287
Cpgi13288 3 82144872 to 82145735 863 CpG island CpG island 13288
Tssr33784 3 82145738 to 82145754 16 - TSS region transcription start site region 33784
Tssr33785 3 82145758 to 82145843 85 - TSS region transcription start site region 33785
Tssr33786 3 82145865 to 82145883 18 - TSS region transcription start site region 33786
Gm29921 3 82146398 to 82236800 90402 - lncRNA gene predicted gene, 29921
Tssr912 3 82271795 to 82271816 21 + TSS region transcription start site region 912
Tssr33787 3 82274699 to 82274709 10 - TSS region transcription start site region 33787
Tssr913 3 82308415 to 82308442 27 + TSS region transcription start site region 913
Cpgi13289 3 82357747 to 82358664 917 CpG island CpG island 13289
Map9 3 82358044 to 82395268 37224 + protein coding gene microtubule-associated protein 9
Tssr29629 3 82358056 to 82358075 19 + TSS region transcription start site region 29629
Tssr29630 3 82358100 to 82358111 11 + TSS region transcription start site region 29630
Tssr29631 3 82358133 to 82358165 32 + TSS region transcription start site region 29631
Tssr29632 3 82358167 to 82358185 18 + TSS region transcription start site region 29632
Tssr29633 3 82358189 to 82358200 11 + TSS region transcription start site region 29633
Tssr29634 3 82358205 to 82358213 8 + TSS region transcription start site region 29634
Tssr914 3 82358215 to 82358220 5 + TSS region transcription start site region 914
Tssr29635 3 82370557 to 82370558 1 + TSS region transcription start site region 29635
Tssr29636 3 82380154 to 82380171 17 + TSS region transcription start site region 29636
Tssr29637 3 82380187 to 82380207 20 + TSS region transcription start site region 29637
Tssr33788 3 82425163 to 82425164 1 - TSS region transcription start site region 33788
D3Mit186 3 82431455 to 82431553 98 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 186
Npy2r 3 82538383 to 82548084 9701 - protein coding gene neuropeptide Y receptor Y2
Cpgi13290 3 82547977 to 82548744 767 CpG island CpG island 13290
Tssr33789 3 82548036 to 82548054 18 - TSS region transcription start site region 33789
Tssr33790 3 82548091 to 82548102 11 - TSS region transcription start site region 33790
D3Mit230 3 82562372 to 82562517 145 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 230
Gm35323 3 82577577 to 82578075 498 + pseudogene predicted gene, 35323
Gm29999 3 82660521 to 82664900 4379 - lncRNA gene predicted gene, 29999
D3Ertd508e 3 82663244 to 82663492 248 DNA segment DNA segment, Chr 3, ERATO Doi 508, expressed
Cpgi13291 3 82663701 to 82663928 227 CpG island CpG island 13291
Gm43347 3 82671988 to 82672567 579 - pseudogene predicted gene 43347
D3Mit339.1 3 82710192 to 82710310 118 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 339.1
Gm30043 3 82754524 to 82759860 5336 + lincRNA gene predicted gene, 30043
Gm22038 3 82793656 to 82793897 241 - unclassified non-coding RNA gene predicted gene, 22038
Gm43348 3 82794975 to 82812234 17259 - lincRNA gene predicted gene 43348
Elads1 3 82802039 to 82802039 0 QTL ENU induced lung adenoma susceptibility 1
Rbm46 3 82837228 to 82876483 39255 - protein coding gene RNA binding motif protein 46
Cpgi13292 3 82875786 to 82876735 949 CpG island CpG island 13292
Tssr33791 3 82876383 to 82876423 40 - TSS region transcription start site region 33791
Tssr33792 3 82876508 to 82876527 19 - TSS region transcription start site region 33792
Tssr29638 3 82876696 to 82876707 11 + TSS region transcription start site region 29638
Rbm46os 3 82876705 to 82943638 66933 + antisense lncRNA gene RNA binding motif protein 46, opposite strand
Lrat 3 82892582 to 82903974 11392 - protein coding gene lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase)
Cpgi13293 3 82903346 to 82904671 1325 CpG island CpG island 13293
Tssr33793 3 82903917 to 82903928 11 - TSS region transcription start site region 33793
Tssr915 3 82903953 to 82903960 7 - TSS region transcription start site region 915
Tssr33794 3 82903963 to 82903981 18 - TSS region transcription start site region 33794
Gm30097 3 82981476 to 83008415 26939 - lincRNA gene predicted gene, 30097
Cpgi13294 3 82995419 to 82995739 320 CpG island CpG island 13294
Fgg 3 83007724 to 83015049 7325 + protein coding gene fibrinogen gamma chain
Tssr29639 3 83007850 to 83007868 18 + TSS region transcription start site region 29639
Tssr29640 3 83008143 to 83008172 29 + TSS region transcription start site region 29640
Tssr29641 3 83008368 to 83008409 41 + TSS region transcription start site region 29641
Tssr29642 3 83008419 to 83008444 25 + TSS region transcription start site region 29642
Tssr29643 3 83008450 to 83008485 35 + TSS region transcription start site region 29643
Tssr29644 3 83008493 to 83008504 11 + TSS region transcription start site region 29644
Tssr916 3 83008506 to 83008514 8 + TSS region transcription start site region 916
Tssr29645 3 83008514 to 83008532 18 + TSS region transcription start site region 29645
Tssr33795 3 83008524 to 83008535 11 - TSS region transcription start site region 33795
Tssr29646 3 83008635 to 83008671 36 + TSS region transcription start site region 29646
Tssr33796 3 83008665 to 83008702 37 - TSS region transcription start site region 33796
Tssr29647 3 83008696 to 83008718 22 + TSS region transcription start site region 29647
Tssr29648 3 83010077 to 83010097 20 + TSS region transcription start site region 29648
Tssr29649 3 83010115 to 83010165 50 + TSS region transcription start site region 29649
Tssr33797 3 83010122 to 83010138 16 - TSS region transcription start site region 33797
Tssr33798 3 83010404 to 83010416 12 - TSS region transcription start site region 33798
Tssr29650 3 83010459 to 83010470 11 + TSS region transcription start site region 29650
Tssr29651 3 83010478 to 83010487 9 + TSS region transcription start site region 29651
Tssr29652 3 83010490 to 83010509 19 + TSS region transcription start site region 29652
Tssr29653 3 83011346 to 83011364 18 + TSS region transcription start site region 29653
Tssr29654 3 83011379 to 83011421 42 + TSS region transcription start site region 29654
Tssr29655 3 83012768 to 83012775 7 + TSS region transcription start site region 29655
Tssr29656 3 83012833 to 83012857 24 + TSS region transcription start site region 29656
Tssr33799 3 83012839 to 83012856 17 - TSS region transcription start site region 33799
Tssr29657 3 83012898 to 83012916 18 + TSS region transcription start site region 29657
Tssr29658 3 83012932 to 83012943 11 + TSS region transcription start site region 29658
Tssr29659 3 83014133 to 83014153 20 + TSS region transcription start site region 29659
Tssr29660 3 83026147 to 83026162 15 + TSS region transcription start site region 29660
Fga 3 83026153 to 83033627 7474 + protein coding gene fibrinogen alpha chain
Tssr29661 3 83028541 to 83028548 7 + TSS region transcription start site region 29661
Tssr29662 3 83028561 to 83028597 36 + TSS region transcription start site region 29662
Tssr29663 3 83028603 to 83028614 11 + TSS region transcription start site region 29663
Tssr29664 3 83029077 to 83029097 20 + TSS region transcription start site region 29664
Tssr29665 3 83029105 to 83029136 31 + TSS region transcription start site region 29665
Tssr29666 3 83029161 to 83029172 11 + TSS region transcription start site region 29666
Tssr29667 3 83029197 to 83029215 18 + TSS region transcription start site region 29667
Tssr29668 3 83030198 to 83030209 11 + TSS region transcription start site region 29668
Tssr29669 3 83030242 to 83030259 17 + TSS region transcription start site region 29669
Tssr29670 3 83030286 to 83030296 10 + TSS region transcription start site region 29670
Tssr29671 3 83030830 to 83030845 15 + TSS region transcription start site region 29671
Tssr29672 3 83030933 to 83030938 5 + TSS region transcription start site region 29672
Tssr29673 3 83030961 to 83030985 24 + TSS region transcription start site region 29673
Tssr29674 3 83031010 to 83031019 9 + TSS region transcription start site region 29674
Tssr29675 3 83031020 to 83031025 5 + TSS region transcription start site region 29675
Tssr29676 3 83031030 to 83031039 9 + TSS region transcription start site region 29676
Tssr29677 3 83031047 to 83031054 7 + TSS region transcription start site region 29677
Tssr33800 3 83031102 to 83031123 21 - TSS region transcription start site region 33800
Tssr29678 3 83031126 to 83031129 3 + TSS region transcription start site region 29678
Tssr29679 3 83031170 to 83031188 18 + TSS region transcription start site region 29679
Tssr29680 3 83031193 to 83031212 19 + TSS region transcription start site region 29680
Tssr29681 3 83031295 to 83031314 19 + TSS region transcription start site region 29681
Tssr29682 3 83031318 to 83031345 27 + TSS region transcription start site region 29682
Tssr29683 3 83031361 to 83031376 15 + TSS region transcription start site region 29683
Tssr29684 3 83031386 to 83031415 29 + TSS region transcription start site region 29684
Tssr29685 3 83031427 to 83031461 34 + TSS region transcription start site region 29685
Tssr33801 3 83031447 to 83031486 39 - TSS region transcription start site region 33801
Tssr29686 3 83031493 to 83031550 57 + TSS region transcription start site region 29686
Tssr33802 3 83031583 to 83031610 27 - TSS region transcription start site region 33802
Tssr29687 3 83031591 to 83031603 12 + TSS region transcription start site region 29687
Tssr29688 3 83031615 to 83031628 13 + TSS region transcription start site region 29688
Tssr29689 3 83031641 to 83031652 11 + TSS region transcription start site region 29689
Tssr29690 3 83031671 to 83031680 9 + TSS region transcription start site region 29690
Tssr917 3 83031698 to 83031701 3 + TSS region transcription start site region 917
Tssr29691 3 83031717 to 83031730 13 + TSS region transcription start site region 29691
Tssr29692 3 83031733 to 83031748 15 + TSS region transcription start site region 29692
Tssr29693 3 83031764 to 83031775 11 + TSS region transcription start site region 29693
Tssr29694 3 83031797 to 83031821 24 + TSS region transcription start site region 29694
Tssr29695 3 83031823 to 83031834 11 + TSS region transcription start site region 29695
Tssr29696 3 83031836 to 83031855 19 + TSS region transcription start site region 29696
Tssr29697 3 83031860 to 83031882 22 + TSS region transcription start site region 29697
Tssr29698 3 83031997 to 83032032 35 + TSS region transcription start site region 29698
Tssr29699 3 83032079 to 83032089 10 + TSS region transcription start site region 29699
Tssr29700 3 83032092 to 83032100 8 + TSS region transcription start site region 29700
Tssr29701 3 83032124 to 83032132 8 + TSS region transcription start site region 29701
Gm40075 3 83037077 to 83038974 1897 - lncRNA gene predicted gene, 40075
D3Mit9.1 3 83037583 to 83037702 119 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 9.1
Tssr33803 3 83041017 to 83041024 7 - TSS region transcription start site region 33803
Fgb 3 83042246 to 83049863 7617 - protein coding gene fibrinogen beta chain
Tssr29702 3 83042420 to 83042444 24 + TSS region transcription start site region 29702
Tssr33804 3 83042455 to 83042468 13 - TSS region transcription start site region 33804
Tssr29703 3 83042462 to 83042479 17 + TSS region transcription start site region 29703
Tssr29704 3 83043219 to 83043250 31 + TSS region transcription start site region 29704
Tssr29705 3 83043319 to 83043349 30 + TSS region transcription start site region 29705
Tssr33805 3 83043396 to 83043407 11 - TSS region transcription start site region 33805
Tssr29706 3 83043401 to 83043438 37 + TSS region transcription start site region 29706
Tssr33806 3 83043460 to 83043477 17 - TSS region transcription start site region 33806
Tssr33807 3 83043795 to 83043805 10 - TSS region transcription start site region 33807