Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:77025835-79147383

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62 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr29571 3 77033709 to 77033710 1 + TSS region transcription start site region 29571
D3Mit280 3 77098157 to 77098280 123 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 280
Gm23644 3 77105209 to 77105285 76 - snoRNA gene predicted gene, 23644
Dnmt3a-ps1 3 77562600 to 77563870 1270 - pseudogene DNA methyltransferase 3A, pseudogene 1
Gm37806 3 77564956 to 77571342 6386 - unclassified gene predicted gene, 37806
Gm18295 3 77691374 to 77692226 852 - pseudogene predicted gene, 18295
Gm38195 3 77702888 to 77704386 1498 - unclassified gene predicted gene, 38195
Tssr29572 3 77760159 to 77760164 5 + TSS region transcription start site region 29572
Gm37576 3 77872782 to 77873153 371 - pseudogene predicted gene, 37576
Gm18719 3 77961384 to 77962793 1409 + pseudogene predicted gene, 18719
Gm6677 3 78006459 to 78006899 440 + pseudogene predicted gene 6677
Gm8684 3 78085835 to 78087383 1548 - pseudogene predicted gene 8684
Gm6680 3 78134630 to 78135579 949 + pseudogene predicted gene 6680
Gm43326 3 78404301 to 78405938 1637 - unclassified gene predicted gene 43326
Gm36288 3 78406157 to 78410767 4610 - lncRNA gene predicted gene, 36288
Gm15442 3 78486808 to 78488637 1829 - pseudogene predicted gene 15442
Tssr33602 3 78508758 to 78508761 3 - TSS region transcription start site region 33602
Tssr33603 3 78594339 to 78594365 26 - TSS region transcription start site region 33603
Tssr33604 3 78594409 to 78594419 10 - TSS region transcription start site region 33604
Tssr33605 3 78594422 to 78594434 12 - TSS region transcription start site region 33605
Tssr33606 3 78594437 to 78594449 12 - TSS region transcription start site region 33606
Tssr33607 3 78594513 to 78594522 9 - TSS region transcription start site region 33607
Tssr33608 3 78594571 to 78594617 46 - TSS region transcription start site region 33608
Tssr33609 3 78627436 to 78627459 23 - TSS region transcription start site region 33609
Tssr33610 3 78647183 to 78647199 16 - TSS region transcription start site region 33610
Gm18952 3 78758619 to 78759464 845 + pseudogene predicted gene, 18952
Tssr33611 3 78762460 to 78762464 4 - TSS region transcription start site region 33611
Gm36341 3 78789735 to 78792231 2496 - lncRNA gene predicted gene, 36341
Bmd24 3 78832754 to 78832934 180 QTL bone mineral density 24
D3Mit137 3 78832754 to 78832934 180 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 137
Gm24749 3 78842224 to 78842566 342 + unclassified non-coding RNA gene predicted gene, 24749
Gm17953 3 78864897 to 78865563 666 - pseudogene predicted gene, 17953
Tssr33612 3 78888457 to 78888458 1 - TSS region transcription start site region 33612
Gm5277 3 78891867 to 78892422 555 - pseudogene predicted gene 5277
Gm10291 3 78917258 to 78918256 998 + pseudogene predicted pseudogene 10291
Gm38542 3 78918459 to 78936306 17847 - lncRNA gene predicted gene, 38542
Gm9762 3 78966356 to 78966799 443 - pseudogene predicted pseudogene 9762
Cpgi13272 3 78966800 to 78967303 503 CpG island CpG island 13272
Gm23440 3 78979922 to 78980051 129 + snoRNA gene predicted gene, 23440
Tssr29573 3 79028436 to 79028442 6 + TSS region transcription start site region 29573
Rapgef2 3 79062516 to 79286517 224001 - protein coding gene Rap guanine nucleotide exchange factor (GEF) 2
Tssr33613 3 79063545 to 79063548 3 - TSS region transcription start site region 33613
Cpgi13273 3 79066519 to 79066884 365 CpG island CpG island 13273
Tssr33614 3 79075391 to 79075425 34 - TSS region transcription start site region 33614
Tssr33615 3 79076304 to 79076331 27 - TSS region transcription start site region 33615
Tssr33616 3 79076590 to 79076599 9 - TSS region transcription start site region 33616
Tssr33617 3 79078896 to 79078920 24 - TSS region transcription start site region 33617
Tssr33618 3 79082515 to 79082517 2 - TSS region transcription start site region 33618
Tssr33619 3 79083596 to 79083616 20 - TSS region transcription start site region 33619
Tssr33620 3 79091921 to 79091932 11 - TSS region transcription start site region 33620
Tssr33621 3 79092758 to 79092778 20 - TSS region transcription start site region 33621
Tssr33622 3 79097298 to 79097336 38 - TSS region transcription start site region 33622
Tssr33623 3 79097643 to 79097653 10 - TSS region transcription start site region 33623
Tssr33624 3 79097708 to 79097754 46 - TSS region transcription start site region 33624
Tssr33625 3 79100007 to 79100024 17 - TSS region transcription start site region 33625
Tssr33626 3 79126527 to 79126540 13 - TSS region transcription start site region 33626
Tssr33627 3 79129422 to 79129430 8 - TSS region transcription start site region 33627
Tssr33628 3 79138469 to 79138473 4 - TSS region transcription start site region 33628
Tssr33629 3 79140794 to 79140831 37 - TSS region transcription start site region 33629
Tssr33630 3 79142964 to 79142966 2 - TSS region transcription start site region 33630
Tssr33631 3 79144406 to 79144410 4 - TSS region transcription start site region 33631
Tssr33632 3 79145912 to 79145930 18 - TSS region transcription start site region 33632