Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:108189553-108290192

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36 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Amigo1 3 108186335 to 108192286 5951 + protein coding gene adhesion molecule with Ig like domain 1
Cyb561d1 3 108195687 to 108201212 5525 - protein coding gene cytochrome b-561 domain containing 1
Tssr1019 3 108199916 to 108199926 10 + TSS region transcription start site region 1019
Tssr35130 3 108200415 to 108200445 30 - TSS region transcription start site region 35130
Cpgi13693 3 108200459 to 108201077 618 CpG island CpG island 13693
Tssr31237 3 108200599 to 108200629 30 + TSS region transcription start site region 31237
Tssr35131 3 108200807 to 108200858 51 - TSS region transcription start site region 35131
Atxn7l2 3 108202222 to 108210527 8305 - protein coding gene ataxin 7-like 2
Cpgi13694 3 108209869 to 108211233 1364 CpG island CpG island 13694
Tssr35132 3 108210438 to 108210502 64 - TSS region transcription start site region 35132
Sypl2 3 108211472 to 108226648 15176 - protein coding gene synaptophysin-like 2
Tssr35133 3 108213649 to 108213657 8 - TSS region transcription start site region 35133
Tssr35134 3 108217686 to 108217717 31 - TSS region transcription start site region 35134
Cpgi13695 3 108225837 to 108226918 1081 CpG island CpG island 13695
Tssr35135 3 108226573 to 108226589 16 - TSS region transcription start site region 35135
Tssr35136 3 108226598 to 108226683 85 - TSS region transcription start site region 35136
Gm40123 3 108226808 to 108239470 12662 + lincRNA gene predicted gene, 40123
Gm12501 3 108239383 to 108239911 528 - pseudogene predicted gene 12501
Cpgi13696 3 108239553 to 108240192 639 CpG island CpG island 13696
1700010K24Rik 3 108248909 to 108256985 8076 - antisense lncRNA gene RIKEN cDNA 1700010K24 gene
Cpgi13697 3 108256681 to 108257643 962 CpG island CpG island 13697
Tssr35137 3 108256804 to 108256841 37 - TSS region transcription start site region 35137
Psma5 3 108256926 to 108279952 23026 + protein coding gene proteasome (prosome, macropain) subunit, alpha type 5
Tssr35138 3 108256980 to 108257030 50 - TSS region transcription start site region 35138
Tssr1020 3 108257138 to 108257141 3 + TSS region transcription start site region 1020
Tssr31238 3 108257160 to 108257171 11 + TSS region transcription start site region 31238
Cpgi13698 3 108283355 to 108284877 1522 CpG island CpG island 13698
Gm12523 3 108283898 to 108284843 945 - antisense lncRNA gene predicted gene 12523
Tssr31239 3 108284063 to 108284074 11 + TSS region transcription start site region 31239
Sort1 3 108284082 to 108361511 77429 + protein coding gene sortilin 1
Tssr31240 3 108284089 to 108284100 11 + TSS region transcription start site region 31240
Tssr31241 3 108284103 to 108284142 39 + TSS region transcription start site region 31241
Tssr35139 3 108284537 to 108284547 10 - TSS region transcription start site region 35139
Tssr35140 3 108284550 to 108284579 29 - TSS region transcription start site region 35140
Tssr35141 3 108284613 to 108284622 9 - TSS region transcription start site region 35141
Gm43099 3 108287881 to 108293121 5240 + unclassified gene predicted gene 43099