Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:9888375-13238534

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469 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
9230102O04Rik 2 9883041 to 9889540 6499 - protein coding gene RIKEN cDNA 9230102O04 gene
Cpgi11187 2 9888929 to 9890016 1087 CpG island CpG island 11187
Tssr22576 2 9889535 to 9889544 9 - TSS region transcription start site region 22576
Tssr22577 2 9889586 to 9889596 10 - TSS region transcription start site region 22577
Tssr22578 2 9890026 to 9890035 9 - TSS region transcription start site region 22578
Cpgi11188 2 9896014 to 9896384 370 CpG island CpG island 11188
Gm13262 2 9906178 to 9914678 8500 + antisense lncRNA gene predicted gene 13262
Tssr16074 2 9906283 to 9906291 8 + TSS region transcription start site region 16074
Gm31290 2 9918177 to 9922384 4207 + lncRNA gene predicted gene, 31290
Tssr22579 2 9951812 to 9951833 21 - TSS region transcription start site region 22579
Tssr22580 2 9952629 to 9952661 32 - TSS region transcription start site region 22580
D2Mit233 2 9955306 to 9955454 148 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 233
Gm31200 2 9965785 to 9968453 2668 + pseudogene predicted gene, 31200
Tssr22581 2 10028957 to 10028974 17 - TSS region transcription start site region 22581
Cpgi11189 2 10047596 to 10048876 1280 CpG island CpG island 11189
C630004M23Rik 2 10047838 to 10049519 1681 + unclassified gene RIKEN cDNA C630004M23 gene
Tssr22582 2 10048580 to 10048621 41 - TSS region transcription start site region 22582
Taf3 2 10048596 to 9914552 -134044 - protein coding gene TATA-box binding protein associated factor 3
Atp5c1 2 10056030 to 10080518 24488 - protein coding gene ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1
Tssr22583 2 10063534 to 10063549 15 - TSS region transcription start site region 22583
Tssr22584 2 10064427 to 10064453 26 - TSS region transcription start site region 22584
Tssr22585 2 10068666 to 10068677 11 - TSS region transcription start site region 22585
Gm23608 2 10075653 to 10075780 127 - snoRNA gene predicted gene, 23608
Cpgi11190 2 10079913 to 10081017 1104 CpG island CpG island 11190
Tssr22586 2 10080154 to 10080166 12 - TSS region transcription start site region 22586
Tssr16075 2 10080182 to 10080186 4 + TSS region transcription start site region 16075
Tssr22587 2 10080405 to 10080446 41 - TSS region transcription start site region 22587
Tssr401 2 10080488 to 10080499 11 - TSS region transcription start site region 401
Tssr16076 2 10080575 to 10080595 20 + TSS region transcription start site region 16076
Kin 2 10080599 to 10092701 12102 + protein coding gene Kin17 DNA and RNA binding protein
Tssr16077 2 10080600 to 10080618 18 + TSS region transcription start site region 16077
Itih2 2 10094591 to 10130683 36092 - protein coding gene inter-alpha trypsin inhibitor, heavy chain 2
Tssr22588 2 10094823 to 10094828 5 - TSS region transcription start site region 22588
Tssr22589 2 10097117 to 10097131 14 - TSS region transcription start site region 22589
Tssr22590 2 10098005 to 10098023 18 - TSS region transcription start site region 22590
Tssr22591 2 10102815 to 10102822 7 - TSS region transcription start site region 22591
Tssr22592 2 10105169 to 10105182 13 - TSS region transcription start site region 22592
D2Mit4 2 10108439 to 10108628 189 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 4
Tssr22593 2 10116723 to 10116735 12 - TSS region transcription start site region 22593
Tssr22594 2 10117438 to 10117450 12 - TSS region transcription start site region 22594
Tssr22595 2 10119534 to 10119545 11 - TSS region transcription start site region 22595
Tssr22596 2 10119559 to 10119576 17 - TSS region transcription start site region 22596
Tssr22597 2 10119583 to 10119595 12 - TSS region transcription start site region 22597
Tssr22598 2 10123457 to 10123467 10 - TSS region transcription start site region 22598
Tssr22599 2 10126203 to 10126285 82 - TSS region transcription start site region 22599
Tssr22600 2 10130575 to 10130586 11 - TSS region transcription start site region 22600
Tssr22601 2 10130638 to 10130689 51 - TSS region transcription start site region 22601
Cpgi11191 2 10153470 to 10153880 410 CpG island CpG island 11191
Tssr16078 2 10153549 to 10153560 11 + TSS region transcription start site region 16078
Tssr16079 2 10153563 to 10153627 64 + TSS region transcription start site region 16079
Itih5 2 10153571 to 10256529 102958 + protein coding gene inter-alpha (globulin) inhibitor H5
Tssr16080 2 10153633 to 10153654 21 + TSS region transcription start site region 16080
Tssr16081 2 10165685 to 10165689 4 + TSS region transcription start site region 16081
D2Mit31.1 2 10243822 to 10243943 121 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 31.1
D2Mit31 2 10243908 to 10244044 136 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 31
5730405A10Rik 2 10276438 to 10277417 979 unclassified gene RIKEN cDNA 5730405A10 gene
Gm31496 2 10305663 to 10307590 1927 - lncRNA gene predicted gene, 31496
Cpgi11192 2 10311839 to 10312047 208 CpG island CpG island 11192
Gm39758 2 10317088 to 10320201 3113 - lncRNA gene predicted gene, 39758
Gm13261 2 10339283 to 10374041 34758 - lncRNA gene predicted gene 13261
Tssr16082 2 10365353 to 10365403 50 + TSS region transcription start site region 16082
Tssr16083 2 10370494 to 10370517 23 + TSS region transcription start site region 16083
Sfmbt2 2 10370510 to 10595253 224743 + protein coding gene Scm-like with four mbt domains 2
Tssr16084 2 10371265 to 10371288 23 + TSS region transcription start site region 16084
Tssr16085 2 10371351 to 10371355 4 + TSS region transcription start site region 16085
Cpgi11193 2 10371521 to 10371718 197 CpG island CpG island 11193
Tssr16086 2 10371609 to 10371614 5 + TSS region transcription start site region 16086
Cpgi11194 2 10372184 to 10372688 504 CpG island CpG island 11194
Tssr16087 2 10372336 to 10372347 11 + TSS region transcription start site region 16087
Tssr16088 2 10372426 to 10372497 71 + TSS region transcription start site region 16088
Tssr16089 2 10372551 to 10372564 13 + TSS region transcription start site region 16089
Cpgi11195 2 10373843 to 10374477 634 CpG island CpG island 11195
Cpgi11196 2 10374644 to 10375423 779 CpG island CpG island 11196
Tssr16090 2 10380551 to 10380556 5 + TSS region transcription start site region 16090
Tssr16091 2 10439875 to 10439879 4 + TSS region transcription start site region 16091
Tssr16092 2 10449084 to 10449104 20 + TSS region transcription start site region 16092
Gm22072 2 10465287 to 10465407 120 + miRNA gene predicted gene, 22072
Gm22677 2 10465760 to 10465867 107 + miRNA gene predicted gene, 22677
Mir466m 2 10466663 to 10466746 83 + miRNA gene microRNA 466m
Mir466f-1 2 10466944 to 10467037 93 + miRNA gene microRNA 466f-1
Mir669f 2 10467229 to 10467349 120 + miRNA gene microRNA 669f
Mir669e 2 10467495 to 10467613 118 + miRNA gene microRNA 669e
Mir669b 2 10467790 to 10467886 96 + miRNA gene microRNA 669b
Gm23578 2 10468069 to 10468172 103 + miRNA gene predicted gene, 23578
Mir669d 2 10468343 to 10468463 120 + miRNA gene microRNA 669d
Mir466f-2 2 10468675 to 10468768 93 + miRNA gene microRNA 466f-2
Mir669l 2 10468971 to 10469068 97 + miRNA gene microRNA 669l
Mir669d-2 2 10471644 to 10471729 85 + miRNA gene microRNA 669d-2
Mir466f-3 2 10471953 to 10472046 93 + miRNA gene microRNA 466f-3
Mir297a-2 2 10472254 to 10472343 89 + miRNA gene microRNA 297a-2
Mir466o 2 10472540 to 10472623 83 + miRNA gene microRNA 466o
Gm26073 2 10473351 to 10473477 126 + miRNA gene predicted gene, 26073
Mir467c 2 10473931 to 10474027 96 + miRNA gene microRNA 467c
Mir466b-1 2 10474219 to 10474300 81 + miRNA gene microRNA 466b-1
Mir669a-3 2 10474433 to 10474541 108 + miRNA gene microRNA 669a-3
Mir669k 2 10475300 to 10475426 126 + miRNA gene microRNA 669k
Gm26491 2 10475500 to 10475620 120 + miRNA gene predicted gene, 26491
Mir467a-1 2 10476346 to 10476418 72 + miRNA gene microRNA 467a-1
Mir466b-8 2 10476628 to 10476713 85 + miRNA gene microRNA 466b-8
Mir669a-1 2 10476853 to 10476949 96 + miRNA gene microRNA 669a-1
Mir669g 2 10477150 to 10477272 122 + miRNA gene microRNA 669g
Gm25701 2 10477710 to 10477836 126 + miRNA gene predicted gene, 25701
Mir669j 2 10477910 to 10478030 120 + miRNA gene microRNA 669j
Mir467a-2 2 10478798 to 10478880 82 + miRNA gene microRNA 467a-2
Mir466e 2 10479088 to 10479171 83 + miRNA gene microRNA 466e
Mir669a-4 2 10479315 to 10479401 86 + miRNA gene microRNA 669a-4
Gm24315 2 10480165 to 10480291 126 + miRNA gene predicted gene, 24315
Gm25451 2 10480365 to 10480485 120 + miRNA gene predicted gene, 25451
Mir467b 2 10481248 to 10481320 72 + miRNA gene microRNA 467b
Mir466c-1 2 10481534 to 10481617 83 + miRNA gene microRNA 466c-1
Mir669a-5 2 10481761 to 10481847 86 + miRNA gene microRNA 669a-5
Gm24761 2 10482612 to 10482738 126 + miRNA gene predicted gene, 24761
Gm23651 2 10482812 to 10482931 119 + miRNA gene predicted gene, 23651
Mir467a-3 2 10483678 to 10483760 82 + miRNA gene microRNA 467a-3
Mir466c-2 2 10483966 to 10484055 89 + miRNA gene microRNA 466c-2
Mir669a-6 2 10484196 to 10484282 86 + miRNA gene microRNA 669a-6
Gm23108 2 10484490 to 10484613 123 + miRNA gene predicted gene, 23108
Gm25680 2 10485051 to 10485176 125 + miRNA gene predicted gene, 25680
Gm22775 2 10485250 to 10485369 119 + miRNA gene predicted gene, 22775
Mir467a-4 2 10486135 to 10486217 82 + miRNA gene microRNA 467a-4
Mir466b-4 2 10486423 to 10486512 89 + miRNA gene microRNA 466b-4
Mir669a-7 2 10486653 to 10486739 86 + miRNA gene microRNA 669a-7
Gm26060 2 10486946 to 10487068 122 + miRNA gene predicted gene, 26060
Gm26431 2 10487507 to 10487633 126 + miRNA gene predicted gene, 26431
Gm26229 2 10487704 to 10487824 120 + miRNA gene predicted gene, 26229
Mir467a-5 2 10488599 to 10488681 82 + miRNA gene microRNA 467a-5
Mir466b-5 2 10488887 to 10488974 87 + miRNA gene microRNA 466b-5
Mir669p-1 2 10489116 to 10489202 86 + miRNA gene microRNA 669p-1
Gm24167 2 10489410 to 10489533 123 + miRNA gene predicted gene, 24167
Gm24640 2 10489971 to 10490096 125 + miRNA gene predicted gene, 24640
Gm23288 2 10490167 to 10490287 120 + miRNA gene predicted gene, 23288
Mir467a-6 2 10491048 to 10491130 82 + miRNA gene microRNA 467a-6
Gm25285 2 10491336 to 10491425 89 + miRNA gene predicted gene, 25285
Mir669a-8 2 10491566 to 10491652 86 + miRNA gene microRNA 669a-8
Gm24673 2 10491860 to 10491983 123 + miRNA gene predicted gene, 24673
Gm22635 2 10492421 to 10492546 125 + miRNA gene predicted gene, 22635
Gm23569 2 10492620 to 10492739 119 + miRNA gene predicted gene, 23569
Mir467a-7 2 10493510 to 10493592 82 + miRNA gene microRNA 467a-7
Mir466b-6 2 10493798 to 10493887 89 + miRNA gene microRNA 466b-6
Mir669a-9 2 10494028 to 10494114 86 + miRNA gene microRNA 4669a-9
Gm26426 2 10494321 to 10494443 122 + miRNA gene predicted gene, 26426
Gm24488 2 10494882 to 10495008 126 + miRNA gene predicted gene, 24488
Gm25158 2 10495079 to 10495199 120 + miRNA gene predicted gene, 25158
Mir467a-8 2 10495980 to 10496062 82 + miRNA gene microRNA 467a-8
Mir466b-7 2 10496268 to 10496355 87 + miRNA gene microRNA 466b-7
Mir669p-2 2 10496497 to 10496583 86 + miRNA gene microRNA 669p-2
Gm24028 2 10496791 to 10496914 123 + miRNA gene predicted gene, 24028
Gm22626 2 10497352 to 10497477 125 + miRNA gene predicted gene, 22626
Gm22166 2 10497548 to 10497668 120 + miRNA gene predicted gene, 22166
Mir467a-9 2 10498393 to 10498475 82 + miRNA gene microRNA 467a-9
Mir466b-2 2 10498685 to 10498766 81 + miRNA gene microRNA 466b-2
Mir669a-10 2 10498911 to 10498997 86 + miRNA gene microRNA 669a-10
Gm26156 2 10499204 to 10499326 122 + miRNA gene predicted gene, 26156
Gm23571 2 10499763 to 10499889 126 + miRNA gene predicted gene, 23571
Gm25316 2 10499966 to 10500083 117 + miRNA gene predicted gene, 25316
Gm25022 2 10500822 to 10500904 82 + miRNA gene predicted gene, 25022
Gm25943 2 10501109 to 10501198 89 + miRNA gene predicted gene, 25943
Mir669a-11 2 10501339 to 10501425 86 + miRNA gene microRNA 669a-11
Gm23988 2 10501633 to 10501754 121 + miRNA gene predicted gene, 23988
Gm25673 2 10502191 to 10502317 126 + miRNA gene predicted gene, 25673
Gm25753 2 10502391 to 10502511 120 + miRNA gene predicted gene, 25753
Mir467a-10 2 10503273 to 10503355 82 + miRNA gene microRNA 467a-10
Mir466b-3 2 10503565 to 10503645 80 + miRNA gene microRNA 466b-3
Mir669a-12 2 10503791 to 10503877 86 + miRNA gene microRNA 669a-12
Gm26398 2 10504647 to 10504773 126 + miRNA gene predicted gene, 26398
Mir467e 2 10505721 to 10505807 86 + miRNA gene microRNA 467e
Mir466p 2 10506006 to 10506094 88 + miRNA gene microRNA 466p
Gm22051 2 10506555 to 10506681 126 + miRNA gene predicted gene, 22051
Gm22678 2 10506755 to 10506855 100 + miRNA gene predicted gene, 22678
Mir467d 2 10507630 to 10507714 84 + miRNA gene microRNA 467d
Mir466 2 10507918 to 10507990 72 + miRNA gene microRNA 466
Gm22091 2 10508453 to 10508579 126 + miRNA gene predicted gene, 22091
Mir297c 2 10509016 to 10509113 97 + miRNA gene microRNA 297c
Mir669c 2 10509296 to 10509404 108 + miRNA gene microRNA 669c
Gm24342 2 10509584 to 10509687 103 + miRNA gene predicted gene, 24342
Gm25263 2 10509885 to 10509984 99 + miRNA gene predicted gene, 25263
Mir669a-2 2 10510164 to 10510260 96 + miRNA gene microRNA 669a-2
Gm22239 2 10510461 to 10510563 102 + miRNA gene predicted gene, 22239
Gm22925 2 10510791 to 10510892 101 + miRNA gene predicted gene, 22925
Gm23542 2 10511370 to 10511465 95 + miRNA gene predicted gene, 23542
Mir297b 2 10511667 to 10511775 108 + miRNA gene microRNA 297b
Mir466d 2 10511967 to 10512062 95 + miRNA gene microRNA 466d
Gm26092 2 10512203 to 10512299 96 + miRNA gene predicted gene, 26092
Mir669m-1 2 10512790 to 10512887 97 + miRNA gene microRNA 669m-1
Mir669m-2 2 10513434 to 10513531 97 + miRNA gene microRNA 669m-2
Mir466n 2 10513741 to 10513834 93 + miRNA gene microRNA 466n
Mir669o 2 10514300 to 10514395 95 + miRNA gene microRNA 669o
Mir466g 2 10514595 to 10514674 79 + miRNA gene microRNA 466g
Mir466h 2 10514891 to 10514971 80 + miRNA gene microRNA 466h
Mir297a-3 2 10515820 to 10515921 101 + miRNA gene microRNA 297a-3
Mir466l 2 10516097 to 10516217 120 + miRNA gene microRNA 466l
Mir297a-4 2 10517067 to 10517164 97 + miRNA gene microRNA 297a-4
Gm24806 2 10517337 to 10517426 89 + miRNA gene predicted gene, 24806
Mir669i 2 10517604 to 10517730 126 + miRNA gene microRNA 669i
Mir669h 2 10518155 to 10518279 124 + miRNA gene microRNA 669h
Tssr16093 2 10523311 to 10523321 10 + TSS region transcription start site region 16093
Tssr16094 2 10593177 to 10593191 14 + TSS region transcription start site region 16094
Tssr16095 2 10594861 to 10594869 8 + TSS region transcription start site region 16095
Gm10852 2 10715025 to 10717670 2645 protein coding gene predicted gene 10852
Tssr16096 2 10803064 to 10803083 19 + TSS region transcription start site region 16096