Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:6643540-12053645

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642 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Celf2 2 6539694 to 7396228 856534 - protein coding gene CUGBP, Elav-like family member 2
Tssr22454 2 6650947 to 6650955 8 - TSS region transcription start site region 22454
Tssr16030 2 6707549 to 6707563 14 + TSS region transcription start site region 16030
Tssr22455 2 6720824 to 6720840 16 - TSS region transcription start site region 22455
Tssr22456 2 6721027 to 6721074 47 - TSS region transcription start site region 22456
Tssr16031 2 6721167 to 6721181 14 + TSS region transcription start site region 16031
Tssr22457 2 6721606 to 6721629 23 - TSS region transcription start site region 22457
Tssr22458 2 6721637 to 6721648 11 - TSS region transcription start site region 22458
Tssr22459 2 6721650 to 6721684 34 - TSS region transcription start site region 22459
Tssr22460 2 6721811 to 6721867 56 - TSS region transcription start site region 22460
Tssr22461 2 6721890 to 6721903 13 - TSS region transcription start site region 22461
Tssr22462 2 6721990 to 6722038 48 - TSS region transcription start site region 22462
Tssr22463 2 6722170 to 6722181 11 - TSS region transcription start site region 22463
Tssr22464 2 6722187 to 6722236 49 - TSS region transcription start site region 22464
Tssr22465 2 6722237 to 6722249 12 - TSS region transcription start site region 22465
Tssr22466 2 6722250 to 6722261 11 - TSS region transcription start site region 22466
Tssr22467 2 6783763 to 6783795 32 - TSS region transcription start site region 22467
6430543K15Rik 2 6786267 to 6787514 1247 unclassified gene RIKEN cDNA 6430543K15 gene
Tssr22468 2 6825356 to 6825357 1 - TSS region transcription start site region 22468
Tssr22469 2 6858001 to 6858009 8 - TSS region transcription start site region 22469
Tssr16032 2 6871531 to 6871538 7 + TSS region transcription start site region 16032
Cpgi11180 2 6871844 to 6873111 1267 CpG island CpG island 11180
Tssr22470 2 6872254 to 6872282 28 - TSS region transcription start site region 22470
Tssr22471 2 6872392 to 6872496 104 - TSS region transcription start site region 22471
Tssr22472 2 6872507 to 6872534 27 - TSS region transcription start site region 22472
Tssr22473 2 6872535 to 6872579 44 - TSS region transcription start site region 22473
Tssr22474 2 6872588 to 6872615 27 - TSS region transcription start site region 22474
Tssr22475 2 6872619 to 6872703 84 - TSS region transcription start site region 22475
Tssr22476 2 6876701 to 6876718 17 - TSS region transcription start site region 22476
Gm13389 2 6884270 to 6886924 2654 + antisense lncRNA gene predicted gene 13389
Tssr22477 2 6884476 to 6884498 22 - TSS region transcription start site region 22477
Tssr22478 2 6884518 to 6884530 12 - TSS region transcription start site region 22478
Tssr22479 2 6884557 to 6884568 11 - TSS region transcription start site region 22479
Tssr22480 2 6884582 to 6884603 21 - TSS region transcription start site region 22480
Tssr22481 2 6884607 to 6884634 27 - TSS region transcription start site region 22481
Tssr22482 2 6884874 to 6884899 25 - TSS region transcription start site region 22482
Tssr22483 2 6884901 to 6884906 5 - TSS region transcription start site region 22483
Tssr22484 2 6884908 to 6884919 11 - TSS region transcription start site region 22484
Tssr22485 2 6884921 to 6884938 17 - TSS region transcription start site region 22485
Tssr22486 2 6884940 to 6884957 17 - TSS region transcription start site region 22486
Tssr22487 2 6884958 to 6884969 11 - TSS region transcription start site region 22487
Tssr22488 2 6884975 to 6884991 16 - TSS region transcription start site region 22488
Tssr22489 2 6885105 to 6885121 16 - TSS region transcription start site region 22489
Tssr22490 2 6885142 to 6885190 48 - TSS region transcription start site region 22490
Tssr22491 2 6885222 to 6885237 15 - TSS region transcription start site region 22491
Tssr22492 2 6885255 to 6885268 13 - TSS region transcription start site region 22492
D2Mit176 2 6885262 to 6885411 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 176
Tssr22493 2 6895635 to 6895642 7 - TSS region transcription start site region 22493
Tssr22494 2 6921421 to 6921424 3 - TSS region transcription start site region 22494
5031426D15Rik 2 6922702 to 6928722 6020 - lncRNA gene RIKEN cDNA 5031426D15 gene
Gm10855 2 6932544 to 6935075 2531 - sense intronic lncRNA gene predicted gene 10855
Tssr22495 2 6938430 to 6938436 6 - TSS region transcription start site region 22495
D2Mit215 2 6939736 to 6939870 134 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 215
Gm37340 2 6940625 to 6951061 10436 + unclassified gene predicted gene, 37340
Tssr22496 2 6949435 to 6949444 9 - TSS region transcription start site region 22496
Gm10115 2 6950453 to 6951680 1227 - sense intronic lncRNA gene predicted gene 10115
Tssr22497 2 7012650 to 7012654 4 - TSS region transcription start site region 22497
Tssr22498 2 7044323 to 7044324 1 - TSS region transcription start site region 22498
2900046F13Rik 2 7045551 to 7046618 1067 unclassified gene RIKEN cDNA 2900046F13 gene
D2Dcr37 2 7062396 to 7062495 99 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 37
Gm26315 2 7076094 to 7076414 320 - unclassified non-coding RNA gene predicted gene, 26315
Gm26565 2 7077265 to 7081313 4048 + lincRNA gene predicted gene, 26565
Tssr22499 2 7081233 to 7081248 15 - TSS region transcription start site region 22499
Tssr22500 2 7081256 to 7081318 62 - TSS region transcription start site region 22500
Tssr22501 2 7083560 to 7083576 16 - TSS region transcription start site region 22501
Tssr22502 2 7083857 to 7083876 19 - TSS region transcription start site region 22502
Tssr22503 2 7085601 to 7085619 18 - TSS region transcription start site region 22503
Tssr22504 2 7085638 to 7085643 5 - TSS region transcription start site region 22504
Tssr22505 2 7085694 to 7085702 8 - TSS region transcription start site region 22505
Tssr22506 2 7099306 to 7099325 19 - TSS region transcription start site region 22506
D2Mit313.1 2 7121469 to 7121585 116 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 313.1
D2Mit313 2 7121553 to 7121697 144 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 313
Tssr22507 2 7125577 to 7125583 6 - TSS region transcription start site region 22507
Tssr22508 2 7125599 to 7125610 11 - TSS region transcription start site region 22508
Tssr22509 2 7125653 to 7125662 9 - TSS region transcription start site region 22509
Tssr22510 2 7144665 to 7144679 14 - TSS region transcription start site region 22510
Tssr22511 2 7144769 to 7144780 11 - TSS region transcription start site region 22511
Tssr22512 2 7147781 to 7147785 4 - TSS region transcription start site region 22512
D2Dcr38 2 7197711 to 7197809 98 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 38
Tssr396 2 7200968 to 7200970 2 - TSS region transcription start site region 396
D2Dcr39 2 7222337 to 7222432 95 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 39
Tssr22513 2 7301861 to 7301874 13 - TSS region transcription start site region 22513
Tssr22514 2 7301912 to 7301919 7 - TSS region transcription start site region 22514
Tssr22515 2 7322648 to 7322651 3 - TSS region transcription start site region 22515
Tssr22516 2 7328291 to 7328296 5 - TSS region transcription start site region 22516
Gm24340 2 7350097 to 7350193 96 + snRNA gene predicted gene, 24340
Tssr22517 2 7395879 to 7395912 33 - TSS region transcription start site region 22517
Tssr22518 2 7395913 to 7395924 11 - TSS region transcription start site region 22518
Tssr22519 2 7395925 to 7395934 9 - TSS region transcription start site region 22519
Tssr397 2 7395934 to 7395937 3 - TSS region transcription start site region 397
Tssr398 2 7395948 to 7395955 7 - TSS region transcription start site region 398
Tssr22520 2 7395968 to 7396011 43 - TSS region transcription start site region 22520
Tssr22521 2 7396012 to 7396031 19 - TSS region transcription start site region 22521
Tssr22522 2 7396141 to 7396152 11 - TSS region transcription start site region 22522
Tssr22523 2 7396192 to 7396241 49 - TSS region transcription start site region 22523
Gm28641 2 7529939 to 7531307 1368 + lincRNA gene predicted gene 28641
D2Mit2 2 7532522 to 7532647 125 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 2
Gm13210 2 7631076 to 7631348 272 + pseudogene predicted gene 13210
Gm13211 2 7716151 to 7781408 65257 - lincRNA gene predicted gene 13211
D2Mit3 2 7718847 to 7719005 158 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 3
D2Nds2 2 7941244 to 7941360 116 DNA segment DNA segment, Chr 2, Nuffield Department of Surgery 2
Tssr16033 2 8026901 to 8026906 5 + TSS region transcription start site region 16033
Gm13254 2 8147200 to 8147798 598 - pseudogene predicted gene 13254
D2Mit177 2 8292071 to 8292182 111 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 177
D2Mit216 2 8309419 to 8309551 132 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 216
Tgq11 2 8319748 to 8319748 0 QTL triglyceride QTL 11
Tgq10 2 8319748 to 8319748 0 QTL triglyceride QTL 10
Gm30904 2 8337502 to 8345328 7826 - lncRNA gene predicted gene, 30904
D2Dcr40 2 8368535 to 8368635 100 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 40
D2Mit232S 2 8445599 to 8445718 119 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-232S
D2Mit232 2 8445725 to 8445872 147 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 232
Gm24534 2 8472094 to 8472384 290 - unclassified non-coding RNA gene predicted gene, 24534
Gm18721 2 8476486 to 8477153 667 + pseudogene predicted gene, 18721
Gm13255 2 8633937 to 8634483 546 + pseudogene predicted gene 13255
Tssr399 2 8730220 to 8730223 3 + TSS region transcription start site region 399
D2Mit117 2 8743596 to 8743770 174 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 117
Tssr16034 2 8797046 to 8797059 13 + TSS region transcription start site region 16034
Gm18434 2 8829240 to 8830394 1154 + pseudogene predicted gene, 18434
D2Dcr41 2 8845635 to 8845731 96 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 41
D2Mit358 2 8907393 to 8907473 80 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 358
D2Mit358S 2 8907490 to 8907612 122 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-358S
Gm30957 2 8946890 to 8975866 28976 + lncRNA gene predicted gene, 30957
Tssr16035 2 8946927 to 8946943 16 + TSS region transcription start site region 16035
Tssr16036 2 8946945 to 8946954 9 + TSS region transcription start site region 16036
Tssr16037 2 8946956 to 8946967 11 + TSS region transcription start site region 16037
Tssr16038 2 8947011 to 8947020 9 + TSS region transcription start site region 16038
Tssr16039 2 8950151 to 8950157 6 + TSS region transcription start site region 16039
Gm10854 2 9034200 to 9035203 1003 protein coding gene predicted gene 10854
Gm13217 2 9041124 to 9042484 1360 - pseudogene predicted gene 13217
Cpgi11181 2 9042537 to 9042688 151 CpG island CpG island 11181
Tssr22524 2 9141476 to 9141519 43 - TSS region transcription start site region 22524
Tssr16040 2 9141662 to 9141700 38 + TSS region transcription start site region 16040
Tssr22525 2 9175767 to 9175774 7 - TSS region transcription start site region 22525
Tssr22526 2 9176055 to 9176059 4 - TSS region transcription start site region 22526
Tssr22527 2 9176824 to 9176833 9 - TSS region transcription start site region 22527
Tssr22528 2 9176860 to 9176869 9 - TSS region transcription start site region 22528
Tssr22529 2 9177873 to 9177895 22 - TSS region transcription start site region 22529
Tssr16041 2 9178031 to 9178042 11 + TSS region transcription start site region 16041
Tssr22530 2 9178717 to 9178725 8 - TSS region transcription start site region 22530
Tssr16042 2 9187837 to 9187848 11 + TSS region transcription start site region 16042
1700061F12Rik 2 9189515 to 9197477 7962 + lincRNA gene RIKEN cDNA 1700061F12 gene
Tssr16043 2 9189546 to 9189557 11 + TSS region transcription start site region 16043
Tssr16044 2 9189558 to 9189563 5 + TSS region transcription start site region 16044
Tssr16045 2 9189567 to 9189574 7 + TSS region transcription start site region 16045
Tssr16046 2 9193478 to 9193505 27 + TSS region transcription start site region 16046
Gm23963 2 9240756 to 9240832 76 - miRNA gene predicted gene, 23963
Gm13221 2 9270080 to 9270509 429 - pseudogene predicted gene 13221
D2Dcr42 2 9271650 to 9271752 102 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 42
Tssr22531 2 9304860 to 9304863 3 - TSS region transcription start site region 22531
Tssr22532 2 9305047 to 9305052 5 - TSS region transcription start site region 22532
Tssr16047 2 9305327 to 9305332 5 + TSS region transcription start site region 16047
D2Dcr43 2 9308713 to 9308809 96 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 43
Tssr16048 2 9313363 to 9313366 3 + TSS region transcription start site region 16048
D2Dcr44 2 9336209 to 9336314 105 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 44
D2Mit359 2 9348540 to 9348645 105 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 359
Gm13219 2 9352431 to 9447676 95245 + lincRNA gene predicted gene 13219
Tssr16049 2 9352468 to 9352480 12 + TSS region transcription start site region 16049
Tssr16050 2 9352481 to 9352499 18 + TSS region transcription start site region 16050
Tssr16051 2 9368462 to 9368511 49 + TSS region transcription start site region 16051
Tssr16052 2 9369038 to 9369053 15 + TSS region transcription start site region 16052
Tssr16053 2 9369064 to 9369075 11 + TSS region transcription start site region 16053
Tssr22533 2 9375933 to 9375937 4 - TSS region transcription start site region 22533
Tssr16054 2 9376280 to 9376325 45 + TSS region transcription start site region 16054
Tssr22534 2 9377953 to 9377964 11 - TSS region transcription start site region 22534
Tssr16055 2 9378241 to 9378261 20 + TSS region transcription start site region 16055
Tssr22535 2 9520132 to 9520135 3 - TSS region transcription start site region 22535
D2Mit5 2 9524642 to 9524778 136 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 5
Sluc16 2 9524642 to 9524778 136 QTL susceptibility to lung cancer 16
Gm13220 2 9575836 to 9576343 507 + pseudogene predicted gene 13220
Gm13218 2 9591218 to 9592938 1720 - lincRNA gene predicted gene 13218
Tssr22536 2 9593808 to 9593828 20 - TSS region transcription start site region 22536
Tssr22537 2 9593989 to 9594002 13 - TSS region transcription start site region 22537
Tssr22538 2 9594061 to 9594086 25 - TSS region transcription start site region 22538
Tssr22539 2 9594132 to 9594144 12 - TSS region transcription start site region 22539
Tssr22540 2 9594168 to 9594179 11 - TSS region transcription start site region 22540
Tssr16056 2 9595626 to 9595634 8 + TSS region transcription start site region 16056
D2Dcr45 2 9602690 to 9602864 174 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 45
D2Dcr131 2 9602710 to 9602826 116 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 131
D2Mit314 2 9610521 to 9610707 186 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 314
D2Mit314S 2 9610688 to 9610816 128 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-314S
Gm37866 2 9630646 to 9631341 695 - unclassified gene predicted gene, 37866
Tssr16057 2 9681793 to 9681804 11 + TSS region transcription start site region 16057
Tssr16058 2 9681807 to 9681818 11 + TSS region transcription start site region 16058
Tssr22541 2 9691629 to 9691634 5 - TSS region transcription start site region 22541
Tssr16059 2 9693726 to 9693730 4 + TSS region transcription start site region 16059
4930554D03Rik 2 9830297 to 9831242 945 unclassified gene RIKEN cDNA 4930554D03 gene
Tssr22542 2 9834217 to 9834223 6 - TSS region transcription start site region 22542
Gata3 2 9857078 to 9878612 21534 - protein coding gene GATA binding protein 3
Tssr22543 2 9857430 to 9857435 5 - TSS region transcription start site region 22543
Tssr22544 2 9857571 to 9857583 12 - TSS region transcription start site region 22544
Tssr22545 2 9863313 to 9863316 3 - TSS region transcription start site region 22545
Tssr22546 2 9863560 to 9863577 17 - TSS region transcription start site region 22546
Tssr22547 2 9867553 to 9867557 4 - TSS region transcription start site region 22547
Tssr22548 2 9868834 to 9868845 11 - TSS region transcription start site region 22548
Tssr22549 2 9868860 to 9868871 11 - TSS region transcription start site region 22549
Tssr22550 2 9868873 to 9868885 12 - TSS region transcription start site region 22550
Tssr22551 2 9869404 to 9869413 9 - TSS region transcription start site region 22551
Tssr16060 2 9869617 to 9869622 5 + TSS region transcription start site region 16060
Tssr22552 2 9869803 to 9869827 24 - TSS region transcription start site region 22552
Cpgi11182 2 9874396 to 9875116 720 CpG island CpG island 11182