Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:5395946-7117266

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185 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Camk1d 2 5293457 to 5714515 421058 - protein coding gene calcium/calmodulin-dependent protein kinase ID
Tssr22409 2 5410936 to 5410941 5 - TSS region transcription start site region 22409
Tssr16003 2 5413246 to 5413248 2 + TSS region transcription start site region 16003
Gm36853 2 5488130 to 5496496 8366 + lncRNA gene predicted gene, 36853
Tssr22410 2 5538681 to 5538716 35 - TSS region transcription start site region 22410
Tssr22411 2 5538731 to 5538744 13 - TSS region transcription start site region 22411
Tssr16004 2 5603551 to 5603565 14 + TSS region transcription start site region 16004
Gm13216 2 5603571 to 5604161 590 + pseudogene predicted gene 13216
Tssr22412 2 5657395 to 5657407 12 - TSS region transcription start site region 22412
Tssr22413 2 5670286 to 5670307 21 - TSS region transcription start site region 22413
Tssr22414 2 5671515 to 5671520 5 - TSS region transcription start site region 22414
Tssr22415 2 5672967 to 5672969 2 - TSS region transcription start site region 22415
Tssr22416 2 5675991 to 5676025 34 - TSS region transcription start site region 22416
Tssr22417 2 5676062 to 5676065 3 - TSS region transcription start site region 22417
Tssr22418 2 5676955 to 5676969 14 - TSS region transcription start site region 22418
Tssr22419 2 5676983 to 5676993 10 - TSS region transcription start site region 22419
Tssr22420 2 5677533 to 5677545 12 - TSS region transcription start site region 22420
Tssr22421 2 5682032 to 5682037 5 - TSS region transcription start site region 22421
Tssr16005 2 5683715 to 5683718 3 + TSS region transcription start site region 16005
Tssr22422 2 5697881 to 5697899 18 - TSS region transcription start site region 22422
Tssr22423 2 5698012 to 5698020 8 - TSS region transcription start site region 22423
Cpgi11167 2 5713678 to 5715321 1643 CpG island CpG island 11167
Tssr22424 2 5714341 to 5714402 61 - TSS region transcription start site region 22424
Tssr22425 2 5714435 to 5714446 11 - TSS region transcription start site region 22425
Tssr22426 2 5714463 to 5714487 24 - TSS region transcription start site region 22426
Tssr22427 2 5714490 to 5714538 48 - TSS region transcription start site region 22427
Gm29857 2 5727992 to 5746476 18484 + lncRNA gene predicted gene, 29857
Cpgi11168 2 5746381 to 5746612 231 CpG island CpG island 11168
Tssr22428 2 5760700 to 5760713 13 - TSS region transcription start site region 22428
Cdc123 2 5794294 to 5844968 50674 - protein coding gene cell division cycle 123
Gm29984 2 5825418 to 5830815 5397 + lncRNA gene predicted gene, 29984
Cpgi11169 2 5844620 to 5845694 1074 CpG island CpG island 11169
Tssr22429 2 5844917 to 5844985 68 - TSS region transcription start site region 22429
Tssr16006 2 5845017 to 5845062 45 + TSS region transcription start site region 16006
Nudt5 2 5845034 to 5870820 25786 + protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 5
Tssr16007 2 5845243 to 5845311 68 + TSS region transcription start site region 16007
Tssr16008 2 5848120 to 5848134 14 + TSS region transcription start site region 16008
Tssr16009 2 5852845 to 5852857 12 + TSS region transcription start site region 16009
Gm13199 2 5862080 to 5862934 854 - protein coding gene predicted gene 13199
Sec61a2 2 5870987 to 5895432 24445 - protein coding gene Sec61, alpha subunit 2 (S. cerevisiae)
B930028L11Rik 2 5887225 to 5889499 2274 unclassified gene RIKEN cDNA B930028L11 gene
Cpgi11170 2 5894950 to 5895579 629 CpG island CpG island 11170
Tssr22430 2 5895325 to 5895408 83 - TSS region transcription start site region 22430
Tssr16010 2 5895456 to 5895475 19 + TSS region transcription start site region 16010
Tssr16011 2 5895489 to 5895513 24 + TSS region transcription start site region 16011
Gm13267 2 5895510 to 5900131 4621 + antisense lncRNA gene predicted gene 13267
Dhtkd1 2 5896115 to 5942792 46677 - protein coding gene dehydrogenase E1 and transketolase domain containing 1
Gm10859 2 5911952 to 5914498 2546 unclassified gene predicted gene 10859
Tssr22431 2 5925268 to 5925272 4 - TSS region transcription start site region 22431
Tssr22432 2 5934533 to 5934535 2 - TSS region transcription start site region 22432
Cpgi11171 2 5942388 to 5942796 408 CpG island CpG island 11171
Tssr22433 2 5942719 to 5942729 10 - TSS region transcription start site region 22433
Tssr22434 2 5942740 to 5942804 64 - TSS region transcription start site region 22434
Cpgi11172 2 5950854 to 5951025 171 CpG island CpG island 11172
Cpgi11173 2 5951054 to 5952232 1178 CpG island CpG island 11173
Tssr16012 2 5951440 to 5951468 28 + TSS region transcription start site region 16012
Upf2 2 5951469 to 6056703 105234 + protein coding gene UPF2 regulator of nonsense transcripts homolog (yeast)
Tssr16013 2 5951480 to 5951536 56 + TSS region transcription start site region 16013
Tssr16014 2 5951568 to 5951589 21 + TSS region transcription start site region 16014
Tssr16015 2 5954581 to 5954621 40 + TSS region transcription start site region 16015
Tssr16016 2 5957460 to 5957473 13 + TSS region transcription start site region 16016
Tssr16017 2 5957597 to 5957620 23 + TSS region transcription start site region 16017
Gm30136 2 6079581 to 6083053 3472 + lncRNA gene predicted gene, 30136
Tssr22435 2 6081158 to 6081161 3 - TSS region transcription start site region 22435
Proser2 2 6098493 to 6130293 31800 - protein coding gene proline and serine rich 2
Cpgi11174 2 6100159 to 6101214 1055 CpG island CpG island 11174
Cpgi11175 2 6129545 to 6130547 1002 CpG island CpG island 11175
Tssr22436 2 6130035 to 6130055 20 - TSS region transcription start site region 22436
Tssr22437 2 6130078 to 6130089 11 - TSS region transcription start site region 22437
Tssr22438 2 6130097 to 6130106 9 - TSS region transcription start site region 22438
Tssr22439 2 6130117 to 6130167 50 - TSS region transcription start site region 22439
Gm13384 2 6132211 to 6133956 1745 - pseudogene predicted gene 13384
Gm10857 2 6132869 to 6140568 7699 + lincRNA gene predicted gene 10857
Echdc3 2 6188465 to 6212994 24529 - protein coding gene enoyl Coenzyme A hydratase domain containing 3
A230108P19Rik 2 6193251 to 6321611 128360 + antisense lncRNA gene RIKEN cDNA A230108P19 gene
Gm30185 2 6208596 to 6211567 2971 - lncRNA gene predicted gene, 30185
Tssr16018 2 6209863 to 6209866 3 + TSS region transcription start site region 16018
Tssr22440 2 6212973 to 6212977 4 - TSS region transcription start site region 22440
Tssr22441 2 6212980 to 6213002 22 - TSS region transcription start site region 22441
Tssr22442 2 6213035 to 6213044 9 - TSS region transcription start site region 22442
Gm13383 2 6255946 to 6257266 1320 - lincRNA gene predicted gene 13383
Tssr22443 2 6256284 to 6256288 4 - TSS region transcription start site region 22443
Gm46730 2 6256838 to 6260737 3899 + lncRNA gene predicted gene, 46730
Tssr16019 2 6294343 to 6294349 6 + TSS region transcription start site region 16019
Cpgi11176 2 6321938 to 6323573 1635 CpG island CpG island 11176
1700014B07Rik 2 6322262 to 6323079 817 protein coding gene RIKEN cDNA 1700014B07 gene
Tssr16020 2 6322621 to 6322647 26 + TSS region transcription start site region 16020
Usp6nl 2 6322667 to 6446390 123723 + protein coding gene USP6 N-terminal like
Tssr16021 2 6322751 to 6322783 32 + TSS region transcription start site region 16021
Tssr16022 2 6322786 to 6322860 74 + TSS region transcription start site region 16022
Tssr22444 2 6323074 to 6323096 22 - TSS region transcription start site region 22444
Tssr22445 2 6323155 to 6323171 16 - TSS region transcription start site region 22445
Tssr16023 2 6341020 to 6341031 11 + TSS region transcription start site region 16023
Tssr16024 2 6342664 to 6342668 4 + TSS region transcription start site region 16024
Cpgi11177 2 6352816 to 6353060 244 CpG island CpG island 11177
Tssr16025 2 6386283 to 6386306 23 + TSS region transcription start site region 16025
Gm13388 2 6431786 to 6436033 4247 - antisense lncRNA gene predicted gene 13388
Tssr16026 2 6471991 to 6472004 13 + TSS region transcription start site region 16026
Gm13391 2 6472000 to 6478619 6619 + lincRNA gene predicted gene 13391
Tssr16027 2 6472027 to 6472052 25 + TSS region transcription start site region 16027
Tssr16028 2 6472067 to 6472076 9 + TSS region transcription start site region 16028
Cpgi11178 2 6478382 to 6478534 152 CpG island CpG island 11178
Gm38386 2 6479690 to 6483110 3420 + unclassified gene predicted gene, 38386
Cpgi11179 2 6523746 to 6524208 462 CpG island CpG island 11179
Celf2 2 6539694 to 7396228 856534 - protein coding gene CUGBP, Elav-like family member 2
Tssr22446 2 6542728 to 6542745 17 - TSS region transcription start site region 22446
Tssr22447 2 6543977 to 6544006 29 - TSS region transcription start site region 22447
Tssr22448 2 6546066 to 6546077 11 - TSS region transcription start site region 22448
Tssr22449 2 6549956 to 6549967 11 - TSS region transcription start site region 22449
C230011H18Rik 2 6566135 to 6569262 3127 unclassified gene RIKEN cDNA C230011H18 gene
Tssr395 2 6570522 to 6570524 2 + TSS region transcription start site region 395
Tssr16029 2 6582915 to 6582950 35 + TSS region transcription start site region 16029
Tssr22450 2 6583716 to 6583725 9 - TSS region transcription start site region 22450
Tssr22451 2 6592801 to 6592831 30 - TSS region transcription start site region 22451
Tssr22452 2 6627934 to 6627939 5 - TSS region transcription start site region 22452
Tssr22453 2 6638136 to 6638140 4 - TSS region transcription start site region 22453
Tssr22454 2 6650947 to 6650955 8 - TSS region transcription start site region 22454
Tssr16030 2 6707549 to 6707563 14 + TSS region transcription start site region 16030
Tssr22455 2 6720824 to 6720840 16 - TSS region transcription start site region 22455
Tssr22456 2 6721027 to 6721074 47 - TSS region transcription start site region 22456
Tssr16031 2 6721167 to 6721181 14 + TSS region transcription start site region 16031
Tssr22457 2 6721606 to 6721629 23 - TSS region transcription start site region 22457
Tssr22458 2 6721637 to 6721648 11 - TSS region transcription start site region 22458
Tssr22459 2 6721650 to 6721684 34 - TSS region transcription start site region 22459
Tssr22460 2 6721811 to 6721867 56 - TSS region transcription start site region 22460
Tssr22461 2 6721890 to 6721903 13 - TSS region transcription start site region 22461
Tssr22462 2 6721990 to 6722038 48 - TSS region transcription start site region 22462
Tssr22463 2 6722170 to 6722181 11 - TSS region transcription start site region 22463
Tssr22464 2 6722187 to 6722236 49 - TSS region transcription start site region 22464
Tssr22465 2 6722237 to 6722249 12 - TSS region transcription start site region 22465
Tssr22466 2 6722250 to 6722261 11 - TSS region transcription start site region 22466
Tssr22467 2 6783763 to 6783795 32 - TSS region transcription start site region 22467
6430543K15Rik 2 6786267 to 6787514 1247 unclassified gene RIKEN cDNA 6430543K15 gene
Tssr22468 2 6825356 to 6825357 1 - TSS region transcription start site region 22468
Tssr22469 2 6858001 to 6858009 8 - TSS region transcription start site region 22469
Tssr16032 2 6871531 to 6871538 7 + TSS region transcription start site region 16032
Cpgi11180 2 6871844 to 6873111 1267 CpG island CpG island 11180
Tssr22470 2 6872254 to 6872282 28 - TSS region transcription start site region 22470
Tssr22471 2 6872392 to 6872496 104 - TSS region transcription start site region 22471
Tssr22472 2 6872507 to 6872534 27 - TSS region transcription start site region 22472
Tssr22473 2 6872535 to 6872579 44 - TSS region transcription start site region 22473
Tssr22474 2 6872588 to 6872615 27 - TSS region transcription start site region 22474
Tssr22475 2 6872619 to 6872703 84 - TSS region transcription start site region 22475
Tssr22476 2 6876701 to 6876718 17 - TSS region transcription start site region 22476
Gm13389 2 6884270 to 6886924 2654 + antisense lncRNA gene predicted gene 13389
Tssr22477 2 6884476 to 6884498 22 - TSS region transcription start site region 22477
Tssr22478 2 6884518 to 6884530 12 - TSS region transcription start site region 22478
Tssr22479 2 6884557 to 6884568 11 - TSS region transcription start site region 22479
Tssr22480 2 6884582 to 6884603 21 - TSS region transcription start site region 22480
Tssr22481 2 6884607 to 6884634 27 - TSS region transcription start site region 22481
Tssr22482 2 6884874 to 6884899 25 - TSS region transcription start site region 22482
Tssr22483 2 6884901 to 6884906 5 - TSS region transcription start site region 22483
Tssr22484 2 6884908 to 6884919 11 - TSS region transcription start site region 22484
Tssr22485 2 6884921 to 6884938 17 - TSS region transcription start site region 22485
Tssr22486 2 6884940 to 6884957 17 - TSS region transcription start site region 22486
Tssr22487 2 6884958 to 6884969 11 - TSS region transcription start site region 22487
Tssr22488 2 6884975 to 6884991 16 - TSS region transcription start site region 22488
Tssr22489 2 6885105 to 6885121 16 - TSS region transcription start site region 22489
Tssr22490 2 6885142 to 6885190 48 - TSS region transcription start site region 22490
Tssr22491 2 6885222 to 6885237 15 - TSS region transcription start site region 22491
Tssr22492 2 6885255 to 6885268 13 - TSS region transcription start site region 22492
D2Mit176 2 6885262 to 6885411 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 176
Tssr22493 2 6895635 to 6895642 7 - TSS region transcription start site region 22493
Tssr22494 2 6921421 to 6921424 3 - TSS region transcription start site region 22494
5031426D15Rik 2 6922702 to 6928722 6020 - lncRNA gene RIKEN cDNA 5031426D15 gene
Gm10855 2 6932544 to 6935075 2531 - sense intronic lncRNA gene predicted gene 10855
Tssr22495 2 6938430 to 6938436 6 - TSS region transcription start site region 22495
D2Mit215 2 6939736 to 6939870 134 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 215
Gm37340 2 6940625 to 6951061 10436 + unclassified gene predicted gene, 37340
Tssr22496 2 6949435 to 6949444 9 - TSS region transcription start site region 22496
Gm10115 2 6950453 to 6951680 1227 - sense intronic lncRNA gene predicted gene 10115
Tssr22497 2 7012650 to 7012654 4 - TSS region transcription start site region 22497
Tssr22498 2 7044323 to 7044324 1 - TSS region transcription start site region 22498
2900046F13Rik 2 7045551 to 7046618 1067 unclassified gene RIKEN cDNA 2900046F13 gene
D2Dcr37 2 7062396 to 7062495 99 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 37
Gm26315 2 7076094 to 7076414 320 - unclassified non-coding RNA gene predicted gene, 26315
Gm26565 2 7077265 to 7081313 4048 + lincRNA gene predicted gene, 26565
Tssr22499 2 7081233 to 7081248 15 - TSS region transcription start site region 22499
Tssr22500 2 7081256 to 7081318 62 - TSS region transcription start site region 22500
Tssr22501 2 7083560 to 7083576 16 - TSS region transcription start site region 22501
Tssr22502 2 7083857 to 7083876 19 - TSS region transcription start site region 22502
Tssr22503 2 7085601 to 7085619 18 - TSS region transcription start site region 22503
Tssr22504 2 7085638 to 7085643 5 - TSS region transcription start site region 22504
Tssr22505 2 7085694 to 7085702 8 - TSS region transcription start site region 22505
Tssr22506 2 7099306 to 7099325 19 - TSS region transcription start site region 22506