Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:5003650-5563874

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44 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mcm10 2 4989714 to 5012791 23077 - protein coding gene minichromosome maintenance 10 replication initiation factor
Cpgi11163 2 5012506 to 5012898 392 CpG island CpG island 11163
Tssr22394 2 5012716 to 5012766 50 - TSS region transcription start site region 22394
A930010G16Rik 2 5018445 to 5019805 1360 unclassified gene RIKEN cDNA A930010G16 gene
Optn 2 5020642 to 5064051 43409 - protein coding gene optineurin
D2Bwg1072e 2 5036296 to 5036513 217 DNA segment DNA segment, Chr 2, Brigham & Women's Genetics 1072 expressed
4930551O13Rik 2 5037280 to 5041133 3853 + antisense lncRNA gene RIKEN cDNA 4930551O13 gene
Tssr22395 2 5062944 to 5062954 10 - TSS region transcription start site region 22395
Cpgi11164 2 5063549 to 5064446 897 CpG island CpG island 11164
Tssr392 2 5063618 to 5063626 8 + TSS region transcription start site region 392
Tssr22396 2 5063932 to 5063971 39 - TSS region transcription start site region 22396
Tssr22397 2 5063975 to 5063986 11 - TSS region transcription start site region 22397
Tssr22398 2 5063996 to 5064048 52 - TSS region transcription start site region 22398
Tssr22399 2 5064052 to 5064075 23 - TSS region transcription start site region 22399
Tssr22400 2 5080567 to 5080573 6 - TSS region transcription start site region 22400
Tssr22401 2 5083816 to 5083827 11 - TSS region transcription start site region 22401
Tssr22402 2 5083839 to 5083852 13 - TSS region transcription start site region 22402
Tssr22403 2 5083863 to 5083872 9 - TSS region transcription start site region 22403
Cpgi11165 2 5098066 to 5098268 202 CpG island CpG island 11165
Gm39755 2 5101028 to 5103438 2410 - lncRNA gene predicted gene, 39755
Cpgi11166 2 5137393 to 5138395 1002 CpG island CpG island 11166
Tssr393 2 5137735 to 5137740 5 + TSS region transcription start site region 393
Gm26776 2 5137749 to 5230864 93115 - lincRNA gene predicted gene, 26776
Tssr16000 2 5137756 to 5137772 16 + TSS region transcription start site region 16000
Ccdc3 2 5137776 to 5230878 93102 + protein coding gene coiled-coil domain containing 3
Tssr16001 2 5137850 to 5137868 18 + TSS region transcription start site region 16001
Gm13198 2 5156555 to 5157107 552 + pseudogene predicted gene 13198
Gm46729 2 5215405 to 5220854 5449 + lncRNA gene predicted gene, 46729
Tssr16002 2 5230053 to 5230062 9 + TSS region transcription start site region 16002
Gm23118 2 5259929 to 5260115 186 - snRNA gene predicted gene, 23118
Gm13197 2 5283650 to 5283874 224 + pseudogene predicted gene 13197
Camk1d 2 5293457 to 5714515 421058 - protein coding gene calcium/calmodulin-dependent protein kinase ID
Tssr22404 2 5296201 to 5296214 13 - TSS region transcription start site region 22404
Tssr22405 2 5297326 to 5297342 16 - TSS region transcription start site region 22405
Tssr22406 2 5306489 to 5306493 4 - TSS region transcription start site region 22406
Gm36906 2 5313211 to 5317500 4289 + lncRNA gene predicted gene, 36906
Tssr22407 2 5339868 to 5339873 5 - TSS region transcription start site region 22407
Tssr22408 2 5379336 to 5379360 24 - TSS region transcription start site region 22408
Tssr394 2 5394172 to 5394173 1 + TSS region transcription start site region 394
Tssr22409 2 5410936 to 5410941 5 - TSS region transcription start site region 22409
Tssr16003 2 5413246 to 5413248 2 + TSS region transcription start site region 16003
Gm36853 2 5488130 to 5496496 8366 + lncRNA gene predicted gene, 36853
Tssr22410 2 5538681 to 5538716 35 - TSS region transcription start site region 22410
Tssr22411 2 5538731 to 5538744 13 - TSS region transcription start site region 22411