Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:3129066-3709073

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fam171a1 2 3114224 to 3227806 113582 + protein coding gene family with sequence similarity 171, member A1
1700057A11Rik 2 3148802 to 3149230 428 unclassified gene RIKEN cDNA 1700057A11 gene
D2Mit312 2 3235114 to 3235237 123 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 312
Cpgi11149 2 3283407 to 3285188 1781 CpG island CpG island 11149
Tssr15884 2 3284169 to 3284182 13 + TSS region transcription start site region 15884
Tssr15885 2 3284202 to 3284220 18 + TSS region transcription start site region 15885
Nmt2 2 3284212 to 3328877 44665 + protein coding gene N-myristoyltransferase 2
Tssr15886 2 3284232 to 3284290 58 + TSS region transcription start site region 15886
Gm22005 2 3291378 to 3291518 140 - snRNA gene predicted gene, 22005
Tssr22354 2 3291515 to 3291517 2 - TSS region transcription start site region 22354
Tssr15887 2 3327292 to 3327296 4 + TSS region transcription start site region 15887
Rpp38 2 3328949 to 3332643 3694 - protein coding gene ribonuclease P/MRP 38 subunit
Cpgi11150 2 3332179 to 3332903 724 CpG island CpG island 11150
Tssr22355 2 3332423 to 3332441 18 - TSS region transcription start site region 22355
Tssr22356 2 3332447 to 3332460 13 - TSS region transcription start site region 22356
Tssr22357 2 3332566 to 3332650 84 - TSS region transcription start site region 22357
Tssr15888 2 3333158 to 3333163 5 + TSS region transcription start site region 15888
Tssr22358 2 3335982 to 3336012 30 - TSS region transcription start site region 22358
Tssr15889 2 3336159 to 3336174 15 + TSS region transcription start site region 15889
Acbd7 2 3336168 to 3340993 4825 + protein coding gene acyl-Coenzyme A binding domain containing 7
Olah 2 3341987 to 3366569 24582 - protein coding gene oleoyl-ACP hydrolase
Gm37525 2 3351134 to 3354004 2870 - sense intronic lncRNA gene predicted gene, 37525
Tssr22359 2 3366568 to 3366571 3 - TSS region transcription start site region 22359
Tssr22360 2 3366574 to 3366587 13 - TSS region transcription start site region 22360
Tssr22361 2 3366599 to 3366613 14 - TSS region transcription start site region 22361
Gm39750 2 3403916 to 3408537 4621 - lncRNA gene predicted gene, 39750
Meig1 2 3409043 to 3422648 13605 - protein coding gene meiosis expressed gene 1
Tssr387 2 3411984 to 3412003 19 - TSS region transcription start site region 387
Cpgi11151 2 3418652 to 3419414 762 CpG island CpG island 11151
Tssr22362 2 3419024 to 3419061 37 - TSS region transcription start site region 22362
Tssr22363 2 3419066 to 3419073 7 - TSS region transcription start site region 22363
Tssr22364 2 3422561 to 3422573 12 - TSS region transcription start site region 22364
Tssr22365 2 3422576 to 3422600 24 - TSS region transcription start site region 22365
Tssr22366 2 3422608 to 3422633 25 - TSS region transcription start site region 22366
Tssr22367 2 3423987 to 3424024 37 - TSS region transcription start site region 22367
Cpgi11152 2 3424041 to 3424414 373 CpG island CpG island 11152
Tssr15890 2 3424123 to 3424207 84 + TSS region transcription start site region 15890
Dclre1c 2 3424131 to 3464130 39999 + protein coding gene DNA cross-link repair 1C
Tssr15891 2 3439309 to 3439330 21 + TSS region transcription start site region 15891
Tssr15892 2 3441032 to 3441044 12 + TSS region transcription start site region 15892
Tssr15893 2 3442473 to 3442510 37 + TSS region transcription start site region 15893
Tssr15894 2 3453700 to 3453716 16 + TSS region transcription start site region 15894
Suv39h2 2 3455815 to 3474986 19171 - protein coding gene suppressor of variegation 3-9 2
Tssr15895 2 3461602 to 3461649 47 + TSS region transcription start site region 15895
Tssr15896 2 3468588 to 3468613 25 + TSS region transcription start site region 15896
Gm13184 2 3468613 to 3474546 5933 + antisense lncRNA gene predicted gene 13184
Cpgi11153 2 3474284 to 3475366 1082 CpG island CpG island 11153
Tssr22368 2 3474954 to 3474975 21 - TSS region transcription start site region 22368
Tssr22369 2 3474989 to 3475004 15 - TSS region transcription start site region 22369
Tssr22370 2 3475027 to 3475086 59 - TSS region transcription start site region 22370
Tssr15897 2 3475172 to 3475186 14 + TSS region transcription start site region 15897
Hspa14 2 3488850 to 3512814 23964 - protein coding gene heat shock protein 14
Tssr22371 2 3498103 to 3498108 5 - TSS region transcription start site region 22371
Gm45902 2 3504527 to 3512790 8263 - protein coding gene predicted gene 45902
Tssr22372 2 3511212 to 3511243 31 - TSS region transcription start site region 22372
Cpgi11154 2 3512161 to 3513402 1241 CpG island CpG island 11154
Tssr22373 2 3512746 to 3512782 36 - TSS region transcription start site region 22373
Tssr22374 2 3512929 to 3512970 41 - TSS region transcription start site region 22374
Cdnf 2 3513030 to 3526376 13346 + protein coding gene cerebral dopamine neurotrophic factor
Tssr15898 2 3513035 to 3513074 39 + TSS region transcription start site region 15898
Tssr15899 2 3513092 to 3513127 35 + TSS region transcription start site region 15899
Tssr22375 2 3517790 to 3517796 6 - TSS region transcription start site region 22375
Gm13186 2 3531285 to 3531600 315 + pseudogene predicted gene 13186
Gm13182 2 3550757 to 3551068 311 + pseudogene predicted gene 13182
Tssr15900 2 3636894 to 3636901 7 + TSS region transcription start site region 15900
Tssr22376 2 3649271 to 3649286 15 - TSS region transcription start site region 22376
Tssr15901 2 3649507 to 3649517 10 + TSS region transcription start site region 15901
Tssr15902 2 3664530 to 3664538 8 + TSS region transcription start site region 15902
Gm13183 2 3679802 to 3680590 788 - pseudogene predicted gene 13183
Tssr15903 2 3686322 to 3686356 34 + TSS region transcription start site region 15903
Gm13181 2 3686362 to 3687430 1068 + pseudogene predicted gene 13181
Tssr15904 2 3704787 to 3704798 11 + TSS region transcription start site region 15904
Fam107b 2 3704812 to 3782142 77330 + protein coding gene family with sequence similarity 107, member B
Carcdq3 2 28289138 to 3233903 -25055235 QTL cardiac collagen deposition QTL 3