Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:22011056-31162682

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1920 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D2Mit79 2 22013043 to 22013252 209 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 79
Gm13337 2 22067826 to 22069419 1593 + pseudogene predicted gene 13337
Cpgi11265 2 22227246 to 22227681 435 CpG island CpG island 11265
Myo3a 2 22227503 to 22618252 390749 + protein coding gene myosin IIIA
Tssr16475 2 22227540 to 22227582 42 + TSS region transcription start site region 16475
Cpgi11266 2 22338450 to 22338852 402 CpG island CpG island 11266
Gm13342 2 22410525 to 22410731 206 - pseudogene predicted gene 13342
Tssr22854 2 22416716 to 22416725 9 - TSS region transcription start site region 22854
Gm13341 2 22587291 to 22587962 671 - pseudogene predicted gene 13341
Gm13340 2 22588103 to 22589647 1544 - pseudogene predicted gene 13340
Cpgi11267 2 22588552 to 22589766 1214 CpG island CpG island 11267
Tssr16476 2 22588981 to 22589011 30 + TSS region transcription start site region 16476
Tssr16477 2 22589031 to 22589043 12 + TSS region transcription start site region 16477
Tssr22855 2 22589044 to 22589087 43 - TSS region transcription start site region 22855
Tssr423 2 22589150 to 22589159 9 + TSS region transcription start site region 423
Tssr22856 2 22589424 to 22589449 25 - TSS region transcription start site region 22856
Gm13339 2 22590024 to 22590533 509 - pseudogene predicted gene 13339
Tssr22857 2 22590214 to 22590215 1 - TSS region transcription start site region 22857
Tssr22858 2 22590259 to 22590275 16 - TSS region transcription start site region 22858
Tssr22859 2 22590297 to 22590305 8 - TSS region transcription start site region 22859
Tssr16478 2 22621849 to 22621874 25 + TSS region transcription start site region 16478
Cpgi11268 2 22621995 to 22622767 772 CpG island CpG island 11268
Tssr16479 2 22622013 to 22622024 11 + TSS region transcription start site region 16479
Tssr16480 2 22622128 to 22622144 16 + TSS region transcription start site region 16480
Tssr16481 2 22622183 to 22622200 17 + TSS region transcription start site region 16481
Gad2 2 22622205 to 22693874 71669 + protein coding gene glutamic acid decarboxylase 2
Tssr16482 2 22622248 to 22622260 12 + TSS region transcription start site region 16482
Tssr16483 2 22622277 to 22622303 26 + TSS region transcription start site region 16483
Tssr16484 2 22622347 to 22622366 19 + TSS region transcription start site region 16484
Tssr16485 2 22622384 to 22622397 13 + TSS region transcription start site region 16485
Tssr16486 2 22622419 to 22622430 11 + TSS region transcription start site region 16486
Tssr16487 2 22622446 to 22622461 15 + TSS region transcription start site region 16487
Tssr16488 2 22622474 to 22622487 13 + TSS region transcription start site region 16488
Tssr16489 2 22622493 to 22622518 25 + TSS region transcription start site region 16489
Tssr16490 2 22622531 to 22622592 61 + TSS region transcription start site region 16490
Tssr16491 2 22622613 to 22622637 24 + TSS region transcription start site region 16491
Tssr16492 2 22622642 to 22622653 11 + TSS region transcription start site region 16492
Cpgi11269 2 22623073 to 22624286 1213 CpG island CpG island 11269
Mir3967 2 22654283 to 22654350 67 + miRNA gene microRNA 3967
Gm23636 2 22666658 to 22666752 94 + miRNA gene predicted gene, 23636
Gm13338 2 22713511 to 22713871 360 + pseudogene predicted gene 13338
Tssr22860 2 22739877 to 22739890 13 - TSS region transcription start site region 22860
Cpgi11270 2 22744412 to 22745127 715 CpG island CpG island 11270
Tssr22861 2 22744573 to 22744595 22 - TSS region transcription start site region 22861
Tssr22862 2 22744605 to 22744621 16 - TSS region transcription start site region 22862
Tssr22863 2 22744764 to 22744786 22 - TSS region transcription start site region 22863
Tssr22864 2 22744902 to 22744932 30 - TSS region transcription start site region 22864
Tssr22865 2 22744975 to 22745020 45 - TSS region transcription start site region 22865
Tssr22866 2 22745041 to 22745087 46 - TSS region transcription start site region 22866
Tssr22867 2 22745115 to 22745139 24 - TSS region transcription start site region 22867
Tssr22868 2 22745293 to 22745327 34 - TSS region transcription start site region 22868
Tssr16493 2 22755971 to 22755981 10 + TSS region transcription start site region 16493
Tssr16494 2 22755984 to 22755993 9 + TSS region transcription start site region 16494
1700092C17Rik 2 22755984 to 22762273 6289 + lincRNA gene RIKEN cDNA 1700092C17 gene
Tssr22869 2 22761317 to 22761334 17 - TSS region transcription start site region 22869
Gm13356 2 22762744 to 22763078 334 - pseudogene predicted gene 13356
Tssr16495 2 22773944 to 22773955 11 + TSS region transcription start site region 16495
Tssr16496 2 22773970 to 22773986 16 + TSS region transcription start site region 16496
Tssr16497 2 22774019 to 22774042 23 + TSS region transcription start site region 16497
Tssr16498 2 22774051 to 22774072 21 + TSS region transcription start site region 16498
Tssr16499 2 22774081 to 22774096 15 + TSS region transcription start site region 16499
Apbb1ip 2 22774094 to 22875653 101559 + protein coding gene amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein
Cpgi11271 2 22774196 to 22774640 444 CpG island CpG island 11271
Tssr16500 2 22774282 to 22774298 16 + TSS region transcription start site region 16500
Tssr424 2 22774292 to 22774333 41 - TSS region transcription start site region 424
Tssr16501 2 22774317 to 22774337 20 + TSS region transcription start site region 16501
Tssr16502 2 22774338 to 22774370 32 + TSS region transcription start site region 16502
Tssr16503 2 22774373 to 22774424 51 + TSS region transcription start site region 16503
Tssr16504 2 22774432 to 22774472 40 + TSS region transcription start site region 16504
Tssr16505 2 22774474 to 22774481 7 + TSS region transcription start site region 16505
Tssr22870 2 22775265 to 22775279 14 - TSS region transcription start site region 22870
Tssr16506 2 22779532 to 22779605 73 + TSS region transcription start site region 16506
Tssr16507 2 22779916 to 22779934 18 + TSS region transcription start site region 16507
Tssr16508 2 22785699 to 22785701 2 + TSS region transcription start site region 16508
Tssr16509 2 22799611 to 22799645 34 + TSS region transcription start site region 16509
Tssr16510 2 22804627 to 22804639 12 + TSS region transcription start site region 16510
Tssr16511 2 22804643 to 22804656 13 + TSS region transcription start site region 16511
Tssr16512 2 22804745 to 22804768 23 + TSS region transcription start site region 16512
Tssr16513 2 22816518 to 22816536 18 + TSS region transcription start site region 16513
Tssr16514 2 22823429 to 22823441 12 + TSS region transcription start site region 16514
Tssr16515 2 22823505 to 22823538 33 + TSS region transcription start site region 16515
Tssr16516 2 22834302 to 22834342 40 + TSS region transcription start site region 16516
Tssr16517 2 22853143 to 22853161 18 + TSS region transcription start site region 16517
Tssr16518 2 22855175 to 22855204 29 + TSS region transcription start site region 16518
Tssr16519 2 22860741 to 22860749 8 + TSS region transcription start site region 16519
Tssr16520 2 22869377 to 22869381 4 + TSS region transcription start site region 16520
Tssr16521 2 22874840 to 22874852 12 + TSS region transcription start site region 16521
Tssr22871 2 22874980 to 22875004 24 - TSS region transcription start site region 22871
Tssr22872 2 22875028 to 22875048 20 - TSS region transcription start site region 22872
Cpgi11272 2 22895218 to 22896204 986 CpG island CpG island 11272
A130006I12Rik 2 22895321 to 22895736 415 - pseudogene RIKEN cDNA A130006I12 gene
Tssr16522 2 22895482 to 22895485 3 + TSS region transcription start site region 16522
Tssr22873 2 22895498 to 22895559 61 - TSS region transcription start site region 22873
Pdss1 2 22895522 to 22940266 44744 + protein coding gene prenyl (solanesyl) diphosphate synthase, subunit 1
Tssr16523 2 22895559 to 22895568 9 + TSS region transcription start site region 16523
Tssr16524 2 22895583 to 22895629 46 + TSS region transcription start site region 16524
Gm25544 2 22902388 to 22902507 119 + snoRNA gene predicted gene, 25544
Gm14441 2 22913293 to 22913832 539 - pseudogene predicted gene 14441
Tssr22874 2 22913876 to 22913883 7 - TSS region transcription start site region 22874
Tssr16525 2 22914663 to 22914682 19 + TSS region transcription start site region 16525
Tssr16526 2 22928557 to 22928562 5 + TSS region transcription start site region 16526
Abi1 2 22940073 to 23040241 100168 - protein coding gene abl-interactor 1
Tssr22875 2 22941899 to 22941949 50 - TSS region transcription start site region 22875
Tssr22876 2 22950688 to 22950707 19 - TSS region transcription start site region 22876
Tssr22877 2 22953534 to 22953567 33 - TSS region transcription start site region 22877
Tssr22878 2 22960836 to 22960856 20 - TSS region transcription start site region 22878
Tssr16527 2 22971116 to 22971137 21 + TSS region transcription start site region 16527
Tssr22879 2 22987548 to 22987589 41 - TSS region transcription start site region 22879
Tssr22880 2 22988202 to 22988203 1 - TSS region transcription start site region 22880
Tssr22881 2 22988809 to 22988819 10 - TSS region transcription start site region 22881
Tssr22882 2 22989240 to 22989260 20 - TSS region transcription start site region 22882
2210402A03Rik 2 22991493 to 22993451 1958 unclassified gene RIKEN cDNA 2210402A03 gene
Gm13357 2 23019131 to 23019667 536 - pseudogene predicted gene 13357
Tssr22883 2 23021626 to 23021629 3 - TSS region transcription start site region 22883
Tssr22884 2 23026086 to 23026093 7 - TSS region transcription start site region 22884
Tssr22885 2 23034989 to 23034994 5 - TSS region transcription start site region 22885
Tssr22886 2 23036145 to 23036159 14 - TSS region transcription start site region 22886
Tssr16528 2 23039290 to 23039324 34 + TSS region transcription start site region 16528
Cpgi11273 2 23039308 to 23040227 919 CpG island CpG island 11273
Tssr22887 2 23040092 to 23040127 35 - TSS region transcription start site region 22887
Tssr22888 2 23040138 to 23040174 36 - TSS region transcription start site region 22888
Tssr22889 2 23040177 to 23040201 24 - TSS region transcription start site region 22889
Acbd5 2 23067689 to 23114513 46824 + protein coding gene acyl-Coenzyme A binding domain containing 5
Tssr22890 2 23068016 to 23068058 42 - TSS region transcription start site region 22890
Cpgi11274 2 23068039 to 23069625 1586 CpG island CpG island 11274
Tssr16529 2 23068217 to 23068241 24 + TSS region transcription start site region 16529
Tssr16530 2 23068261 to 23068284 23 + TSS region transcription start site region 16530
Tssr16531 2 23069057 to 23069089 32 + TSS region transcription start site region 16531
Tssr16532 2 23069117 to 23069144 27 + TSS region transcription start site region 16532
Tssr16533 2 23069149 to 23069169 20 + TSS region transcription start site region 16533
Tssr16534 2 23069188 to 23069208 20 + TSS region transcription start site region 16534
Tssr16535 2 23069210 to 23069252 42 + TSS region transcription start site region 16535
Tssr22891 2 23069271 to 23069283 12 - TSS region transcription start site region 22891
Tssr16536 2 23069413 to 23069424 11 + TSS region transcription start site region 16536
Tssr16537 2 23069441 to 23069455 14 + TSS region transcription start site region 16537
Tssr16538 2 23098089 to 23098093 4 + TSS region transcription start site region 16538
D2Mit465 2 23109782 to 23109908 126 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 465
Mastl 2 23116539 to 23156024 39485 - protein coding gene microtubule associated serine/threonine kinase-like
Tssr425 2 23138478 to 23138481 3 + TSS region transcription start site region 425
Tssr16539 2 23155509 to 23155530 21 + TSS region transcription start site region 16539
Cpgi11275 2 23155539 to 23156865 1326 CpG island CpG island 11275
Tssr22892 2 23155864 to 23155925 61 - TSS region transcription start site region 22892
Tssr16540 2 23155954 to 23155980 26 + TSS region transcription start site region 16540
Tssr16541 2 23156013 to 23156023 10 + TSS region transcription start site region 16541
Tssr16542 2 23156173 to 23156188 15 + TSS region transcription start site region 16542
Yme1l1 2 23156369 to 23199260 42891 + protein coding gene YME1-like 1 (S. cerevisiae)
Tssr16543 2 23156508 to 23156527 19 + TSS region transcription start site region 16543
Tssr16544 2 23187791 to 23187804 13 + TSS region transcription start site region 16544
Tssr16545 2 23191006 to 23191024 18 + TSS region transcription start site region 16545
Tssr16546 2 23196451 to 23196463 12 + TSS region transcription start site region 16546
Tssr16547 2 23197391 to 23197395 4 + TSS region transcription start site region 16547
Tssr16548 2 23197812 to 23197829 17 + TSS region transcription start site region 16548
Tssr16549 2 23201936 to 23201942 6 + TSS region transcription start site region 16549
Gm13423 2 23202033 to 23202910 877 + pseudogene predicted gene 13423
Tssr16550 2 23207458 to 23207465 7 + TSS region transcription start site region 16550
Tssr16551 2 23207470 to 23207493 23 + TSS region transcription start site region 16551
4931423N10Rik 2 23207476 to 23267129 59653 + protein coding gene RIKEN cDNA 4931423N10 gene
Cpgi11276 2 23234215 to 23234731 516 CpG island CpG island 11276
Gm13422 2 23235236 to 23235739 503 + pseudogene predicted gene 13422
Tssr426 2 23247283 to 23247285 2 + TSS region transcription start site region 426
Tssr16552 2 23259986 to 23259990 4 + TSS region transcription start site region 16552
Cpgi11277 2 23321036 to 23321584 548 CpG island CpG island 11277
Nxph2 2 23321246 to 23401973 80727 + protein coding gene neurexophilin 2
Gm34769 2 23353095 to 23367102 14007 - lncRNA gene predicted gene, 34769
A330106F07Rik 2 23492927 to 23494447 1520 unclassified gene RIKEN cDNA A330106F07 gene
Gm38309 2 23492931 to 23494448 1517 + unclassified gene predicted gene, 38309
Tssr22893 2 23496396 to 23496400 4 - TSS region transcription start site region 22893
Spopl 2 23506220 to 23572106 65886 - protein coding gene speckle-type POZ protein-like
Gm13331 2 23508860 to 23509307 447 + pseudogene predicted gene 13331
Tssr22894 2 23521985 to 23522000 15 - TSS region transcription start site region 22894
Tssr22895 2 23524068 to 23524079 11 - TSS region transcription start site region 22895
Cpgi11278 2 23571506 to 23572170 664 CpG island CpG island 11278
Tssr22896 2 23572038 to 23572112 74 - TSS region transcription start site region 22896
Mnctp2 2 23572688 to 23572688 0 QTL percent monocytes 2
Sh3d2c-ps1 2 23680218 to 23681121 903 + pseudogene SH3 domain protein 2C, pseudogene 1
Gm26323 2 23823053 to 23823227 174 + unclassified non-coding RNA gene predicted gene, 26323
Gm13392 2 23908441 to 23908590 149 + pseudogene predicted gene 13392
Tssr22897 2 23961345 to 23961346 1 - TSS region transcription start site region 22897
Hnmt 2 24002910 to 24049394 46484 - protein coding gene histamine N-methyltransferase
Tssr22898 2 24048828 to 24048846 18 - TSS region transcription start site region 22898
Tssr22899 2 24048857 to 24048868 11 - TSS region transcription start site region 22899
Tssr22900 2 24049356 to 24049380 24 - TSS region transcription start site region 22900
Tssr22901 2 24049389 to 24049400 11 - TSS region transcription start site region 22901
Tssr22902 2 24049408 to 24049419 11 - TSS region transcription start site region 22902
Tbpl2 2 24071721 to 24096595 24874 - protein coding gene TATA box binding protein like 2
Tssr16553 2 24153148 to 24153165 17 + TSS region transcription start site region 16553
Il1f8 2 24153172 to 24160103 6931 + protein coding gene interleukin 1 family, member 8
Tssr16554 2 24153173 to 24153197 24 + TSS region transcription start site region 16554
2310066D07Rik 2 24171586 to 24172072 486 unclassified gene RIKEN cDNA 2310066D07 gene
Gm13410 2 24178834 to 24180314 1480 + pseudogene predicted gene 13410
Tssr16555 2 24186313 to 24186322 9 + TSS region transcription start site region 16555
Tssr16556 2 24186393 to 24186402 9 + TSS region transcription start site region 16556
Tssr16557 2 24186435 to 24186451 16 + TSS region transcription start site region 16557
Tssr16558 2 24186453 to 24186464 11 + TSS region transcription start site region 16558
Tssr16559 2 24186469 to 24186484 15 + TSS region transcription start site region 16559
Il1f9 2 24186476 to 24193567 7091 + protein coding gene interleukin 1 family, member 9
Tssr16560 2 24186505 to 24186512 7 + TSS region transcription start site region 16560
Tssr16561 2 24186770 to 24186793 23 + TSS region transcription start site region 16561
Tssr16562 2 24214770 to 24214773 3 + TSS region transcription start site region 16562
Tssr16563 2 24215330 to 24215365 35 + TSS region transcription start site region 16563