Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:181643562-181743590

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prpf6 2 181601319 to 181655661 54342 + protein coding gene pre-mRNA splicing factor 6
Tssr22334 2 181650461 to 181650466 5 + TSS region transcription start site region 22334
Tssr22335 2 181656879 to 181656900 21 + TSS region transcription start site region 22335
Gm29797 2 181657034 to 181659467 2433 + protein coding gene predicted gene, 29797
Cpgi12934 2 181659105 to 181659755 650 CpG island CpG island 12934
Gm25879 2 181662306 to 181662412 106 + snRNA gene predicted gene, 25879
Sox18 2 181669837 to 181671640 1803 - protein coding gene SRY (sex determining region Y)-box 18
Cpgi12935 2 181670143 to 181671908 1765 CpG island CpG island 12935
Tssr28225 2 181671604 to 181671605 1 - TSS region transcription start site region 28225
Tssr28226 2 181671622 to 181671645 23 - TSS region transcription start site region 28226
Cpgi12936 2 181675493 to 181675799 306 CpG island CpG island 12936
Cpgi12937 2 181679880 to 181680896 1016 CpG island CpG island 12937
Tssr22336 2 181680284 to 181680332 48 + TSS region transcription start site region 22336
Tcea2 2 181680310 to 181688071 7761 + protein coding gene transcription elongation factor A (SII), 2
Tssr811 2 181680334 to 181680341 7 + TSS region transcription start site region 811
Rgs19 2 181688419 to 181693977 5558 - protein coding gene regulator of G-protein signaling 19
Tssr28227 2 181689000 to 181689006 6 - TSS region transcription start site region 28227
Tssr22337 2 181689113 to 181689140 27 + TSS region transcription start site region 22337
Tssr28228 2 181689153 to 181689192 39 - TSS region transcription start site region 28228
Tssr28229 2 181689289 to 181689302 13 - TSS region transcription start site region 28229
Tssr28230 2 181691771 to 181691801 30 - TSS region transcription start site region 28230
Tssr28231 2 181691804 to 181691831 27 - TSS region transcription start site region 28231
Cpgi12938 2 181693354 to 181694481 1127 CpG island CpG island 12938
Tssr28232 2 181693544 to 181693554 10 - TSS region transcription start site region 28232
Tssr28233 2 181693562 to 181693590 28 - TSS region transcription start site region 28233
Tssr28234 2 181693596 to 181693629 33 - TSS region transcription start site region 28234
Tssr28235 2 181693654 to 181693670 16 - TSS region transcription start site region 28235
Tssr22338 2 181693670 to 181693701 31 + TSS region transcription start site region 22338
Tssr28236 2 181693710 to 181693722 12 - TSS region transcription start site region 28236
Tssr28237 2 181693725 to 181693732 7 - TSS region transcription start site region 28237
Tssr22339 2 181693783 to 181693784 1 + TSS region transcription start site region 22339
Tssr28238 2 181693899 to 181693987 88 - TSS region transcription start site region 28238
Lkaaear1 2 181696793 to 181698442 1649 - protein coding gene LKAAEAR motif containing 1 (IKAAEAR murine motif)
Cpgi12939 2 181696953 to 181697619 666 CpG island CpG island 12939
Tssr28239 2 181697804 to 181697825 21 - TSS region transcription start site region 28239
Tssr28240 2 181697829 to 181697834 5 - TSS region transcription start site region 28240
Tssr28241 2 181697837 to 181697844 7 - TSS region transcription start site region 28241
Tssr28242 2 181698407 to 181698415 8 - TSS region transcription start site region 28242
Tssr28243 2 181698433 to 181698447 14 - TSS region transcription start site region 28243
Tssr22340 2 181715005 to 181715082 77 + TSS region transcription start site region 22340
Oprl1 2 181715016 to 181720985 5969 + protein coding gene opioid receptor-like 1
Tssr22341 2 181715086 to 181715102 16 + TSS region transcription start site region 22341
Gm14489 2 181724083 to 181724621 538 - pseudogene predicted gene 14489