Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:172185473-172397753

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32 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr27938 2 172225738 to 172225739 1 - TSS region transcription start site region 27938
Cpgi12816 2 172248240 to 172248546 306 CpG island CpG island 12816
Mc3r 2 172248492 to 172251114 2622 + protein coding gene melanocortin 3 receptor
Cpgi12817 2 172249158 to 172249980 822 CpG island CpG island 12817
Gm40007 2 172263129 to 172276213 13084 - lncRNA gene predicted gene, 40007
Gm40008 2 172285473 to 172297753 12280 - lncRNA gene predicted gene, 40008
Tssr21941 2 172287977 to 172288014 37 + TSS region transcription start site region 21941
Tssr21942 2 172288120 to 172288137 17 + TSS region transcription start site region 21942
Gm14275 2 172288133 to 172290520 2387 + lincRNA gene predicted gene 14275
Tssr21943 2 172288145 to 172288159 14 + TSS region transcription start site region 21943
Gm14273 2 172324334 to 172338663 14329 + antisense lncRNA gene predicted gene 14273
Cpgi12818 2 172329300 to 172329536 236 CpG island CpG island 12818
Cpgi12819 2 172345315 to 172346383 1068 CpG island CpG island 12819
Fam210b 2 172345570 to 172355749 10179 + protein coding gene family with sequence similarity 210, member B
Tssr21944 2 172345579 to 172345590 11 + TSS region transcription start site region 21944
Tssr21945 2 172345595 to 172345626 31 + TSS region transcription start site region 21945
Tssr21946 2 172345628 to 172345647 19 + TSS region transcription start site region 21946
Tssr27939 2 172345670 to 172345683 13 - TSS region transcription start site region 27939
Tssr21947 2 172353289 to 172353296 7 + TSS region transcription start site region 21947
Aurka 2 172356190 to 172370535 14345 - protein coding gene aurora kinase A
Cpgi12820 2 172370109 to 172371381 1272 CpG island CpG island 12820
Tssr27940 2 172370514 to 172370540 26 - TSS region transcription start site region 27940
Tssr21948 2 172370645 to 172370656 11 + TSS region transcription start site region 21948
Tssr21949 2 172370658 to 172370744 86 + TSS region transcription start site region 21949
Cstf1 2 172370686 to 172382449 11763 + protein coding gene cleavage stimulation factor, 3' pre-RNA, subunit 1
Tssr27941 2 172370878 to 172370922 44 - TSS region transcription start site region 27941
Tssr21950 2 172370939 to 172370985 46 + TSS region transcription start site region 21950
Cass4 2 172393794 to 172433757 39963 + protein coding gene Cas scaffolding protein family member 4
Tssr21951 2 172393802 to 172393829 27 + TSS region transcription start site region 21951
Tssr21952 2 172393948 to 172393964 16 + TSS region transcription start site region 21952
D2Mit147 2 172394708 to 172394821 113 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 147
Tssr27942 2 172396010 to 172396050 40 - TSS region transcription start site region 27942