Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:16543804-20073818

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297 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plxdc2 2 16356304 to 16755839 399535 + protein coding gene plexin domain containing 2
Tssr16337 2 16548737 to 16548755 18 + TSS region transcription start site region 16337
Tssr16338 2 16548928 to 16548953 25 + TSS region transcription start site region 16338
Tssr16339 2 16565402 to 16565409 7 + TSS region transcription start site region 16339
Tssr16340 2 16568520 to 16568550 30 + TSS region transcription start site region 16340
Tssr22741 2 16571860 to 16571870 10 - TSS region transcription start site region 22741
Tssr16341 2 16650178 to 16650190 12 + TSS region transcription start site region 16341
Tssr16342 2 16657415 to 16657420 5 + TSS region transcription start site region 16342
Tssr16343 2 16660820 to 16660837 17 + TSS region transcription start site region 16343
Tssr16344 2 16675231 to 16675266 35 + TSS region transcription start site region 16344
Tssr16345 2 16675302 to 16675306 4 + TSS region transcription start site region 16345
9930032E11Rik 2 16692247 to 16695625 3378 unclassified gene RIKEN cDNA 9930032E11 gene
Tssr22742 2 16712119 to 16712159 40 - TSS region transcription start site region 22742
Tssr16346 2 16729283 to 16729295 12 + TSS region transcription start site region 16346
Tssr16347 2 16751197 to 16751208 11 + TSS region transcription start site region 16347
Tssr16348 2 16751278 to 16751296 18 + TSS region transcription start site region 16348
Tssr16349 2 16751385 to 16751404 19 + TSS region transcription start site region 16349
Tssr16350 2 16755317 to 16755329 12 + TSS region transcription start site region 16350
Tssr16351 2 16758938 to 16758973 35 + TSS region transcription start site region 16351
Tssr16352 2 16776654 to 16776657 3 + TSS region transcription start site region 16352
4930515L03Rik 2 16918678 to 17013726 95048 - lncRNA gene RIKEN cDNA 4930515L03 gene
Gm24933 2 16959909 to 16960018 109 - miRNA gene predicted gene, 24933
Gm13326 2 16978821 to 16979831 1010 - pseudogene predicted gene 13326
2900073N21Rik 2 17017681 to 17018645 964 unclassified gene RIKEN cDNA 2900073N21 gene
Gm33002 2 17061614 to 17166869 105255 - lncRNA gene predicted gene, 33002
Gm13325 2 17169225 to 17170030 805 + pseudogene predicted gene 13325
Gm13322 2 17181743 to 17185487 3744 - lincRNA gene predicted gene 13322
Tssr22743 2 17185478 to 17185492 14 - TSS region transcription start site region 22743
Tssr22744 2 17202088 to 17202092 4 - TSS region transcription start site region 22744
D2Mit267 2 17202994 to 17203123 129 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 267
Nebl 2 17343909 to 17731464 387555 - protein coding gene nebulette
Tssr22745 2 17365307 to 17365321 14 - TSS region transcription start site region 22745
A430023P06Rik 2 17365431 to 17367972 2541 unclassified gene RIKEN cDNA A430023P06 gene
Tssr22746 2 17368615 to 17368651 36 - TSS region transcription start site region 22746
Tssr22747 2 17390860 to 17390871 11 - TSS region transcription start site region 22747
Tssr22748 2 17390874 to 17390884 10 - TSS region transcription start site region 22748
Tssr22749 2 17390890 to 17390899 9 - TSS region transcription start site region 22749
Tssr22750 2 17390910 to 17390943 33 - TSS region transcription start site region 22750
Tssr22751 2 17390953 to 17391042 89 - TSS region transcription start site region 22751
Tssr22752 2 17391094 to 17391105 11 - TSS region transcription start site region 22752
Tssr22753 2 17411156 to 17411161 5 - TSS region transcription start site region 22753
Tssr22754 2 17460583 to 17460594 11 - TSS region transcription start site region 22754
Tssr22755 2 17460600 to 17460609 9 - TSS region transcription start site region 22755
Tssr22756 2 17460610 to 17460635 25 - TSS region transcription start site region 22756
Tssr16353 2 17559054 to 17559065 11 + TSS region transcription start site region 16353
Gm13324 2 17559060 to 17559998 938 + antisense lncRNA gene predicted gene 13324
Mir6419 2 17563514 to 17563626 112 + miRNA gene microRNA 6419
D2Mit178 2 17605905 to 17606027 122 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 178
Tssr22757 2 17650393 to 17650397 4 - TSS region transcription start site region 22757
Tssr22758 2 17689771 to 17689784 13 - TSS region transcription start site region 22758
Tssr22759 2 17689879 to 17689890 11 - TSS region transcription start site region 22759
Tssr22760 2 17690130 to 17690144 14 - TSS region transcription start site region 22760
Tssr22761 2 17690176 to 17690186 10 - TSS region transcription start site region 22761
Tssr22762 2 17707023 to 17707026 3 - TSS region transcription start site region 22762
Cpgi11225 2 17730294 to 17731628 1334 CpG island CpG island 11225
Tssr22763 2 17731035 to 17731087 52 - TSS region transcription start site region 22763
Tssr22764 2 17731088 to 17731120 32 - TSS region transcription start site region 22764
Tssr22765 2 17731392 to 17731411 19 - TSS region transcription start site region 22765
Tssr22766 2 17731415 to 17731449 34 - TSS region transcription start site region 22766
Tssr22767 2 17731573 to 17731589 16 - TSS region transcription start site region 22767
Tssr22768 2 17731760 to 17731765 5 - TSS region transcription start site region 22768
Gm13323 2 17797328 to 17797674 346 - pseudogene predicted gene 13323
Cpgi11226 2 17839247 to 17839477 230 CpG island CpG island 11226
Cpgi11227 2 17899740 to 17899894 154 CpG island CpG island 11227
Cpgi11228 2 17932807 to 17932995 188 CpG island CpG island 11228
H2al2a 2 17996417 to 17996958 541 - protein coding gene H2A histone family member L2A
Tssr22769 2 17996917 to 17996919 2 - TSS region transcription start site region 22769
Tssr22770 2 17996924 to 17996945 21 - TSS region transcription start site region 22770
Gm13329 2 17998241 to 17998505 264 - pseudogene predicted gene 13329
Gm33085 2 18019767 to 18035222 15455 - lncRNA gene predicted gene, 33085
A930004D18Rik 2 18025193 to 18037737 12544 - protein coding gene RIKEN cDNA A930004D18 gene
Cpgi11229 2 18025993 to 18029110 3117 CpG island CpG island 11229
Gm17762 2 18027249 to 18030577 3328 + lncRNA gene predicted gene, 17762
Tssr22771 2 18027448 to 18027493 45 - TSS region transcription start site region 22771
Tssr16354 2 18027734 to 18027748 14 + TSS region transcription start site region 16354
Tssr16355 2 18027948 to 18027983 35 + TSS region transcription start site region 16355
Tssr22772 2 18028644 to 18028655 11 - TSS region transcription start site region 22772
Tssr22773 2 18028741 to 18028770 29 - TSS region transcription start site region 22773
Tssr22774 2 18028820 to 18028840 20 - TSS region transcription start site region 22774
Tssr22775 2 18030967 to 18030972 5 - TSS region transcription start site region 22775
Cpgi11230 2 18031523 to 18032142 619 CpG island CpG island 11230
Gm13330 2 18032533 to 18039633 7100 + antisense lncRNA gene predicted gene 13330
Cpgi11231 2 18039643 to 18040000 357 CpG island CpG island 11231
Skida1 2 18040676 to 18049051 8375 - protein coding gene SKI/DACH domain containing 1
Cpgi11232 2 18040941 to 18041092 151 CpG island CpG island 11232
Cpgi11233 2 18046703 to 18048398 1695 CpG island CpG island 11233
Tssr22776 2 18047785 to 18047801 16 - TSS region transcription start site region 22776
Tssr22777 2 18047815 to 18047846 31 - TSS region transcription start site region 22777
Tssr22778 2 18047873 to 18047895 22 - TSS region transcription start site region 22778
Tssr22779 2 18048347 to 18048351 4 - TSS region transcription start site region 22779
Tssr22780 2 18048787 to 18048822 35 - TSS region transcription start site region 22780
Tssr16356 2 18049003 to 18049027 24 + TSS region transcription start site region 16356
Tssr22781 2 18050981 to 18050987 6 - TSS region transcription start site region 22781
1810059C17Rik 2 18054193 to 18056613 2420 - unclassified non-coding RNA gene RIKEN cDNA 1810059C17 gene
Tssr16357 2 18055172 to 18055202 30 + TSS region transcription start site region 16357
Tssr16358 2 18055203 to 18055221 18 + TSS region transcription start site region 16358
Mllt10 2 18055237 to 18212388 157151 + protein coding gene myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10
Tssr16359 2 18055704 to 18055733 29 + TSS region transcription start site region 16359
Tssr22782 2 18055981 to 18055990 9 - TSS region transcription start site region 22782
Cpgi11234 2 18056140 to 18058054 1914 CpG island CpG island 11234
Tssr16360 2 18057128 to 18057145 17 + TSS region transcription start site region 16360
Gm39762 2 18057572 to 18064241 6669 - lncRNA gene predicted gene, 39762
Mir7655 2 18057846 to 18057903 57 + miRNA gene microRNA 7655
Tssr16361 2 18063891 to 18063913 22 + TSS region transcription start site region 16361
Cpgi11235 2 18063915 to 18065862 1947 CpG island CpG island 11235
Tssr16362 2 18064319 to 18064330 11 + TSS region transcription start site region 16362
Tssr16363 2 18064340 to 18064348 8 + TSS region transcription start site region 16363
Tssr16364 2 18064356 to 18064408 52 + TSS region transcription start site region 16364
Tssr16365 2 18064416 to 18064429 13 + TSS region transcription start site region 16365
Tssr16366 2 18064564 to 18064644 80 + TSS region transcription start site region 16366
Tssr16367 2 18064645 to 18064705 60 + TSS region transcription start site region 16367
Tssr16368 2 18064710 to 18064722 12 + TSS region transcription start site region 16368
Tssr16369 2 18064792 to 18064816 24 + TSS region transcription start site region 16369
Tssr16370 2 18073939 to 18073943 4 + TSS region transcription start site region 16370
Tssr16371 2 18086273 to 18086275 2 + TSS region transcription start site region 16371
Tssr16372 2 18105705 to 18105743 38 + TSS region transcription start site region 16372
Gm23638 2 18129452 to 18129577 125 - miRNA gene predicted gene, 23638
Tssr16373 2 18129804 to 18129834 30 + TSS region transcription start site region 16373
Tssr16374 2 18155980 to 18155995 15 + TSS region transcription start site region 16374
Tssr16375 2 18156192 to 18156219 27 + TSS region transcription start site region 16375
Gm25147 2 18158687 to 18158791 104 + snRNA gene predicted gene, 25147
Tssr16376 2 18171751 to 18171755 4 + TSS region transcription start site region 16376
Tssr16377 2 18172269 to 18172281 12 + TSS region transcription start site region 16377
Tssr16378 2 18172705 to 18172710 5 + TSS region transcription start site region 16378
Gm13351 2 18179029 to 18179442 413 - pseudogene predicted gene 13351
Tssr22783 2 18179480 to 18179481 1 - TSS region transcription start site region 22783
Tssr16379 2 18186536 to 18186541 5 + TSS region transcription start site region 16379
Tssr16380 2 18186770 to 18186805 35 + TSS region transcription start site region 16380
Gm39761 2 18188864 to 18196587 7723 - lncRNA gene predicted gene, 39761
Tssr16381 2 18192893 to 18192897 4 + TSS region transcription start site region 16381
Dnajc1 2 18206333 to 18392853 186520 - protein coding gene DnaJ heat shock protein family (Hsp40) member C1
Tssr22784 2 18219482 to 18219492 10 - TSS region transcription start site region 22784
Tssr22785 2 18219707 to 18219719 12 - TSS region transcription start site region 22785
Gm13350 2 18249365 to 18249843 478 - pseudogene predicted gene 13350
Tssr22786 2 18292013 to 18292018 5 - TSS region transcription start site region 22786
Tssr22787 2 18307005 to 18307023 18 - TSS region transcription start site region 22787
Tssr16382 2 18307934 to 18307981 47 + TSS region transcription start site region 16382
Tssr22788 2 18308804 to 18308818 14 - TSS region transcription start site region 22788
Tssr22789 2 18316942 to 18316976 34 - TSS region transcription start site region 22789
Gm13349 2 18338579 to 18338989 410 - pseudogene predicted gene 13349
Tssr22790 2 18348966 to 18348970 4 - TSS region transcription start site region 22790
Tssr22791 2 18390833 to 18390861 28 - TSS region transcription start site region 22791
Cpgi11236 2 18392065 to 18393036 971 CpG island CpG island 11236
Tssr22792 2 18392662 to 18392665 3 - TSS region transcription start site region 22792
Tssr22793 2 18392694 to 18392699 5 - TSS region transcription start site region 22793
Tssr22794 2 18392715 to 18392716 1 - TSS region transcription start site region 22794
Tssr22795 2 18392721 to 18392726 5 - TSS region transcription start site region 22795
Tssr22796 2 18392736 to 18392838 102 - TSS region transcription start site region 22796
Tssr16383 2 18497487 to 18497491 4 + TSS region transcription start site region 16383
Tssr16384 2 18567720 to 18567722 2 + TSS region transcription start site region 16384
Gm13353 2 18568126 to 18568198 72 + pseudogene predicted gene 13353
Mdq8 2 18571206 to 18571206 0 QTL mammary ductal QTL 8
n-TNgtt9 2 18587044 to 18587117 73 - tRNA gene nuclear encoded tRNA asparagine 9 (anticodon GTT)
Cpgi11237 2 18587399 to 18587721 322 CpG island CpG island 11237
D2Mit464 2 18595710 to 18595834 124 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 464
Cpgi11238 2 18608351 to 18610001 1650 CpG island CpG island 11238
Gm13355 2 18641786 to 18642102 316 - pseudogene predicted gene 13355
Gm13352 2 18649085 to 18649346 261 - pseudogene predicted gene 13352
Gm33355 2 18668574 to 18672401 3827 - lncRNA gene predicted gene, 33355
Cpgi11239 2 18671872 to 18673094 1222 CpG island CpG island 11239
Tssr411 2 18672201 to 18672268 67 + TSS region transcription start site region 411
Tssr16385 2 18672417 to 18672482 65 + TSS region transcription start site region 16385
Commd3 2 18672462 to 18676216 3754 + protein coding gene COMM domain containing 3
Tssr16386 2 18672493 to 18672504 11 + TSS region transcription start site region 16386
Cpgi11240 2 18676104 to 18678241 2137 CpG island CpG island 11240
Tssr16387 2 18676827 to 18676885 58 + TSS region transcription start site region 16387
Tssr16388 2 18676952 to 18676968 16 + TSS region transcription start site region 16388
Tssr16389 2 18677002 to 18677053 51 + TSS region transcription start site region 16389
Bmi1 2 18677018 to 18686629 9611 + protein coding gene Bmi1 polycomb ring finger oncogene
Tssr16390 2 18677055 to 18677066 11 + TSS region transcription start site region 16390
Tssr16391 2 18677078 to 18677101 23 + TSS region transcription start site region 16391
Tssr16392 2 18677105 to 18677118 13 + TSS region transcription start site region 16392
Tssr16393 2 18677133 to 18677214 81 + TSS region transcription start site region 16393
Cpgi11241 2 18681021 to 18681342 321 CpG island CpG island 11241
Gm46725 2 18687502 to 18690731 3229 - protein coding gene predicted gene, 46725
Cpgi11242 2 18688667 to 18690700 2033 CpG island CpG island 11242
Cpgi11243 2 18693974 to 18695004 1030 CpG island CpG island 11243
Spag6 2 18694011 to 18749746 55735 + protein coding gene sperm associated antigen 6
Cpgi11244 2 18698519 to 18699524 1005 CpG island CpG island 11244
Tssr22797 2 18698872 to 18698885 13 - TSS region transcription start site region 22797
Tssr16394 2 18698970 to 18698977 7 + TSS region transcription start site region 16394
Tssr412 2 18698981 to 18698985 4 + TSS region transcription start site region 412
Tssr16395 2 18698987 to 18698997 10 + TSS region transcription start site region 16395
Tssr16396 2 18698998 to 18699018 20 + TSS region transcription start site region 16396
Tssr16397 2 18699030 to 18699037 7 + TSS region transcription start site region 16397
Tssr413 2 18699041 to 18699042 1 + TSS region transcription start site region 413
Tssr16398 2 18699052 to 18699057 5 + TSS region transcription start site region 16398
Gm3363 2 18742709 to 18760862 18153 - lncRNA gene predicted gene 3363
Gm20539 2 18742715 to 18760862 18147 - unclassified non-coding RNA gene predicted gene 20539
Gm13333 2 18758984 to 18759754 770 + pseudogene predicted gene 13333
Cpgi11245 2 18766819 to 18767532 713 CpG island CpG island 11245
Tssr22798 2 18767053 to 18767066 13 - TSS region transcription start site region 22798
Carlr 2 18799245 to 18801818 2573 - lincRNA gene cardiac and apoptosis-related long non-coding RNA
Cpgi11246 2 18799741 to 18800921 1180 CpG island CpG island 11246
Tssr22799 2 18800014 to 18800045 31 - TSS region transcription start site region 22799
Tssr22800 2 18800047 to 18800063 16 - TSS region transcription start site region 22800
Pip4k2a 2 18842255 to 18998126 155871 - protein coding gene phosphatidylinositol-5-phosphate 4-kinase, type II, alpha
Tssr22801 2 18844224 to 18844237 13 - TSS region transcription start site region 22801
Tssr22802 2 18867232 to 18867235 3 - TSS region transcription start site region 22802
Tssr22803 2 18868289 to 18868293 4 - TSS region transcription start site region 22803