Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:158686427-160486530

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Wg2d 2 143931525 to 160461088 16529563 QTL weight gain in high growth mice 2d
Agoc2 2 152000000 to 160000000 8000000 QTL agouti coat color QTL 2
Hrec 2 154711297 to 159586530 4875233 QTL hemotopoietic response to early cytokines
Ppp1r16b 2 158666733 to 158766334 99601 + protein coding gene protein phosphatase 1, regulatory subunit 16B
Cpgi12604 2 158695944 to 158696301 357 CpG island CpG island 12604
Tssr21374 2 158700971 to 158700972 1 + TSS region transcription start site region 21374
Tssr21375 2 158723439 to 158723450 11 + TSS region transcription start site region 21375
Tssr21376 2 158723455 to 158723467 12 + TSS region transcription start site region 21376
Gm26141 2 158740138 to 158740263 125 + miRNA gene predicted gene, 26141
Tssr21377 2 158762118 to 158762137 19 + TSS region transcription start site region 21377
Cpgi12605 2 158767740 to 158768707 967 CpG island CpG island 12605
Tssr21378 2 158768083 to 158768099 16 + TSS region transcription start site region 21378
Fam83d 2 158768099 to 158786637 18538 + protein coding gene family with sequence similarity 83, member D
Cpgi12606 2 158794393 to 158795409 1016 CpG island CpG island 12606
Dhx35 2 158794807 to 158858214 63407 + protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 35
Tssr21379 2 158794853 to 158794892 39 + TSS region transcription start site region 21379
3010023C09Rik 2 158858819 to 158859641 822 unclassified gene RIKEN cDNA 3010023C09 gene
Gm38630 2 158909272 to 158965525 56253 + lncRNA gene predicted gene, 38630
Gm44319 2 159069863 to 159069955 92 + miRNA gene predicted gene, 44319
Gm25090 2 159139361 to 159139492 131 + snoRNA gene predicted gene, 25090
D2Mit341 2 159274941 to 159275163 222 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 341
Tssr729 2 159354449 to 159354453 4 + TSS region transcription start site region 729
D2Dcr113 2 159430118 to 159430237 119 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 113
D2Mit287 2 159430119 to 159430251 132 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 287
Gm14219 2 159456170 to 159456457 287 - pseudogene predicted gene 14219
Intim1 2 159586427 to 159586530 103 QTL intima modifier 1
D2Mit411 2 159586427 to 159586530 103 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 411
Intmrm1 2 159586427 to 159586530 103 QTL intima/media ratio modifier 1
Mdq18 2 159752856 to 159752856 0 QTL mammary ductal QTL 18
Gm11445 2 159777676 to 159778207 531 - pseudogene predicted gene 11445
Gm11446 2 159858537 to 159859339 802 - pseudogene predicted gene 11446
Gm14223 2 159911773 to 159947376 35603 - lincRNA gene predicted gene 14223
4933416E03Rik 2 159947341 to 159981288 33947 + lncRNA gene RIKEN cDNA 4933416E03 gene
Gm14220 2 159978274 to 159978722 448 + pseudogene predicted gene 14220
9130015L21Rik 2 160016653 to 160040619 23966 + lincRNA gene RIKEN cDNA 9130015L21 gene
D2Mit410 2 160069467 to 160069585 118 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 410
Gm34741 2 160155226 to 160169665 14439 - lncRNA gene predicted gene, 34741
Tssr21380 2 160210776 to 160210804 28 + TSS region transcription start site region 21380
Gm34805 2 160213958 to 160252262 38304 - lncRNA gene predicted gene, 34805
Gm46773 2 160260334 to 160361096 100762 - protein coding gene predicted gene, 46773
Gm826 2 160311393 to 160334162 22769 - protein coding gene predicted gene 826
Tssr27236 2 160327169 to 160327192 23 - TSS region transcription start site region 27236
Tssr27237 2 160334111 to 160334122 11 - TSS region transcription start site region 27237
Mafb 2 160363703 to 160367065 3362 - protein coding gene v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)
Tssr21381 2 160364460 to 160364500 40 + TSS region transcription start site region 21381
Tssr27238 2 160364585 to 160364628 43 - TSS region transcription start site region 27238
Tssr27239 2 160364733 to 160364750 17 - TSS region transcription start site region 27239
Tssr730 2 160364882 to 160364895 13 - TSS region transcription start site region 730
Cpgi12607 2 160365149 to 160369408 4259 CpG island CpG island 12607
Tssr21382 2 160365779 to 160365808 29 + TSS region transcription start site region 21382
Tssr21383 2 160366230 to 160366244 14 + TSS region transcription start site region 21383
Tssr21384 2 160366254 to 160366284 30 + TSS region transcription start site region 21384
Tssr27240 2 160367057 to 160367073 16 - TSS region transcription start site region 27240
Tssr21385 2 160367345 to 160367357 12 + TSS region transcription start site region 21385
Tssr27241 2 160367940 to 160367951 11 - TSS region transcription start site region 27241
Cpgi12608 2 160370279 to 160370686 407 CpG island CpG island 12608
Gm34980 2 160374661 to 160381860 7199 + lncRNA gene predicted gene, 34980
Tssr21386 2 160394511 to 160394534 23 + TSS region transcription start site region 21386
D2Mit196 2 160460945 to 160461088 143 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 196
D2Dcr114 2 160460991 to 160461108 117 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 114