Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:155806458-156148900

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mmp24 2 155775342 to 155818366 43024 + protein coding gene matrix metallopeptidase 24
Cpgi12533 2 155812159 to 155812336 177 CpG island CpG island 12533
BC029722 2 155817730 to 155819203 1473 - lincRNA gene cDNA sequence BC029722
Cpgi12534 2 155818847 to 155819396 549 CpG island CpG island 12534
Tssr27010 2 155818866 to 155818895 29 - TSS region transcription start site region 27010
Tssr27011 2 155819181 to 155819190 9 - TSS region transcription start site region 27011
Tssr27012 2 155819196 to 155819269 73 - TSS region transcription start site region 27012
Tssr27013 2 155819404 to 155819434 30 - TSS region transcription start site region 27013
Eif6 2 155819837 to 155826925 7088 - protein coding gene eukaryotic translation initiation factor 6
Cpgi12535 2 155825980 to 155826875 895 CpG island CpG island 12535
Tssr21127 2 155826138 to 155826151 13 + TSS region transcription start site region 21127
Tssr714 2 155826434 to 155826445 11 - TSS region transcription start site region 714
Tssr27014 2 155826453 to 155826464 11 - TSS region transcription start site region 27014
Tssr27015 2 155826465 to 155826481 16 - TSS region transcription start site region 27015
Tssr27016 2 155826606 to 155826618 12 - TSS region transcription start site region 27016
Tssr27017 2 155826647 to 155826710 63 - TSS region transcription start site region 27017
Gm16098 2 155826788 to 155827953 1165 + antisense lncRNA gene predicted gene 16098
Fam83c 2 155829183 to 155834854 5671 - protein coding gene family with sequence similarity 83, member C
Tssr27018 2 155834845 to 155834861 16 - TSS region transcription start site region 27018
Uqcc1 2 155846894 to 155930310 83416 - protein coding gene ubiquinol-cytochrome c reductase complex assembly factor 1
D2Mit262 2 155867416 to 155867524 108 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 262
D2Dcr111 2 155867417 to 155867515 98 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 111
Tssr715 2 155869235 to 155869237 2 + TSS region transcription start site region 715
2310008B10Rik 2 155879884 to 155881359 1475 unclassified gene RIKEN cDNA 2310008B10 gene
Cpgi12536 2 155929885 to 155930387 502 CpG island CpG island 12536
Tssr27019 2 155930038 to 155930066 28 - TSS region transcription start site region 27019
Tssr21128 2 155930084 to 155930107 23 + TSS region transcription start site region 21128
Tssr27020 2 155930190 to 155930211 21 - TSS region transcription start site region 27020
Gm15557 2 155940728 to 155942750 2022 + protein coding gene predicted gene 15557
Gdf5 2 155941023 to 155945364 4341 - protein coding gene growth differentiation factor 5
Cpgi12537 2 155941811 to 155942398 587 CpG island CpG island 12537
Tssr27021 2 155945249 to 155945259 10 - TSS region transcription start site region 27021
Tssr27022 2 155945282 to 155945306 24 - TSS region transcription start site region 27022
Cpgi12538 2 155956087 to 155957058 971 CpG island CpG island 12538
Cep250 2 155956458 to 155998900 42442 + protein coding gene centrosomal protein 250
Tssr21129 2 155956537 to 155956607 70 + TSS region transcription start site region 21129
Tssr21130 2 155974290 to 155974311 21 + TSS region transcription start site region 21130
Tssr21131 2 155979042 to 155979066 24 + TSS region transcription start site region 21131
Tssr27023 2 155979445 to 155979466 21 - TSS region transcription start site region 27023
Tssr21132 2 155979534 to 155979583 49 + TSS region transcription start site region 21132
Tssr21133 2 155979599 to 155979616 17 + TSS region transcription start site region 21133
Tssr27024 2 155989193 to 155989232 39 - TSS region transcription start site region 27024
Tssr21134 2 155989307 to 155989331 24 + TSS region transcription start site region 21134
Cpgi12539 2 155991751 to 155992088 337 CpG island CpG island 12539
6430550D23Rik 2 156000443 to 156007977 7534 - protein coding gene RIKEN cDNA 6430550D23 gene
Cpgi12540 2 156007773 to 156008648 875 CpG island CpG island 12540
Ergic3 2 156008045 to 156018279 10234 + protein coding gene ERGIC and golgi 3
Tssr21135 2 156008068 to 156008085 17 + TSS region transcription start site region 21135
Tssr21136 2 156008088 to 156008138 50 + TSS region transcription start site region 21136
Tssr27025 2 156016747 to 156016765 18 - TSS region transcription start site region 27025
Tssr21137 2 156017655 to 156017674 19 + TSS region transcription start site region 21137
Fer1l4 2 156019139 to 156052947 33808 - protein coding gene fer-1-like 4 (C. elegans)
Tssr27026 2 156052950 to 156052964 14 - TSS region transcription start site region 27026
Tssr27027 2 156052967 to 156053009 42 - TSS region transcription start site region 27027
Gm14240 2 156056128 to 156056673 545 + pseudogene predicted gene 14240
Gm39970 2 156060910 to 156064614 3704 - lncRNA gene predicted gene, 39970
Cpgi12541 2 156065052 to 156066281 1229 CpG island CpG island 12541
Spag4 2 156065153 to 156069501 4348 + protein coding gene sperm associated antigen 4
Tssr21138 2 156065180 to 156065282 102 + TSS region transcription start site region 21138
Tssr21139 2 156065729 to 156065736 7 + TSS region transcription start site region 21139
Tssr21140 2 156065738 to 156065760 22 + TSS region transcription start site region 21140
Cpne1 2 156071842 to 156111965 40123 - protein coding gene copine I
Gm28036 2 156071845 to 156127092 55247 - protein coding gene predicted gene, 28036
Gm37274 2 156084610 to 156086291 1681 - unclassified gene predicted gene, 37274
Rbm12 2 156094882 to 156111965 17083 - protein coding gene RNA binding motif protein 12
Tssr27028 2 156108028 to 156108032 4 - TSS region transcription start site region 27028
Cpgi12542 2 156111213 to 156112152 939 CpG island CpG island 12542
Tssr27029 2 156111913 to 156111940 27 - TSS region transcription start site region 27029
Tssr27030 2 156111954 to 156111965 11 - TSS region transcription start site region 27030
Nfs1 2 156123639 to 156144186 20547 - protein coding gene nitrogen fixation gene 1 (S. cerevisiae)
D2Mit48 2 156124680 to 156124809 129 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 48
Pbwg11 2 156124680 to 156124809 129 QTL postnatal body weight growth 11
D2Dcr112 2 156124687 to 156124802 115 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 112
Tssr27031 2 156135377 to 156135382 5 - TSS region transcription start site region 27031
Cpgi12543 2 156143672 to 156144708 1036 CpG island CpG island 12543
Tssr21141 2 156144023 to 156144035 12 + TSS region transcription start site region 21141
Tssr27032 2 156144138 to 156144192 54 - TSS region transcription start site region 27032
Romo1 2 156144153 to 156145794 1641 + protein coding gene reactive oxygen species modulator 1
Tssr21142 2 156144203 to 156144245 42 + TSS region transcription start site region 21142
Rbm39 2 156147239 to 156180238 32999 - protein coding gene RNA binding motif protein 39