Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:155777763-156577780

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173 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mmp24 2 155775342 to 155818366 43024 + protein coding gene matrix metallopeptidase 24
Tssr21126 2 155778673 to 155778683 10 + TSS region transcription start site region 21126
Gm46772 2 155792303 to 155798059 5756 - lncRNA gene predicted gene, 46772
Cpgi12533 2 155812159 to 155812336 177 CpG island CpG island 12533
BC029722 2 155817730 to 155819203 1473 - lincRNA gene cDNA sequence BC029722
Cpgi12534 2 155818847 to 155819396 549 CpG island CpG island 12534
Tssr27010 2 155818866 to 155818895 29 - TSS region transcription start site region 27010
Tssr27011 2 155819181 to 155819190 9 - TSS region transcription start site region 27011
Tssr27012 2 155819196 to 155819269 73 - TSS region transcription start site region 27012
Tssr27013 2 155819404 to 155819434 30 - TSS region transcription start site region 27013
Eif6 2 155819837 to 155826925 7088 - protein coding gene eukaryotic translation initiation factor 6
Cpgi12535 2 155825980 to 155826875 895 CpG island CpG island 12535
Tssr21127 2 155826138 to 155826151 13 + TSS region transcription start site region 21127
Tssr714 2 155826434 to 155826445 11 - TSS region transcription start site region 714
Tssr27014 2 155826453 to 155826464 11 - TSS region transcription start site region 27014
Tssr27015 2 155826465 to 155826481 16 - TSS region transcription start site region 27015
Tssr27016 2 155826606 to 155826618 12 - TSS region transcription start site region 27016
Tssr27017 2 155826647 to 155826710 63 - TSS region transcription start site region 27017
Gm16098 2 155826788 to 155827953 1165 + antisense lncRNA gene predicted gene 16098
Fam83c 2 155829183 to 155834854 5671 - protein coding gene family with sequence similarity 83, member C
Tssr27018 2 155834845 to 155834861 16 - TSS region transcription start site region 27018
Uqcc1 2 155846894 to 155930310 83416 - protein coding gene ubiquinol-cytochrome c reductase complex assembly factor 1
D2Mit262 2 155867416 to 155867524 108 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 262
D2Dcr111 2 155867417 to 155867515 98 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 111
Tssr715 2 155869235 to 155869237 2 + TSS region transcription start site region 715
2310008B10Rik 2 155879884 to 155881359 1475 unclassified gene RIKEN cDNA 2310008B10 gene
Cpgi12536 2 155929885 to 155930387 502 CpG island CpG island 12536
Tssr27019 2 155930038 to 155930066 28 - TSS region transcription start site region 27019
Tssr21128 2 155930084 to 155930107 23 + TSS region transcription start site region 21128
Tssr27020 2 155930190 to 155930211 21 - TSS region transcription start site region 27020
Gm15557 2 155940728 to 155942750 2022 + protein coding gene predicted gene 15557
Gdf5 2 155941023 to 155945364 4341 - protein coding gene growth differentiation factor 5
Cpgi12537 2 155941811 to 155942398 587 CpG island CpG island 12537
Tssr27021 2 155945249 to 155945259 10 - TSS region transcription start site region 27021
Tssr27022 2 155945282 to 155945306 24 - TSS region transcription start site region 27022
Cpgi12538 2 155956087 to 155957058 971 CpG island CpG island 12538
Cep250 2 155956458 to 155998900 42442 + protein coding gene centrosomal protein 250
Tssr21129 2 155956537 to 155956607 70 + TSS region transcription start site region 21129
Tssr21130 2 155974290 to 155974311 21 + TSS region transcription start site region 21130
Tssr21131 2 155979042 to 155979066 24 + TSS region transcription start site region 21131
Tssr27023 2 155979445 to 155979466 21 - TSS region transcription start site region 27023
Tssr21132 2 155979534 to 155979583 49 + TSS region transcription start site region 21132
Tssr21133 2 155979599 to 155979616 17 + TSS region transcription start site region 21133
Tssr27024 2 155989193 to 155989232 39 - TSS region transcription start site region 27024
Tssr21134 2 155989307 to 155989331 24 + TSS region transcription start site region 21134
Cpgi12539 2 155991751 to 155992088 337 CpG island CpG island 12539
6430550D23Rik 2 156000443 to 156007977 7534 - protein coding gene RIKEN cDNA 6430550D23 gene
Cpgi12540 2 156007773 to 156008648 875 CpG island CpG island 12540
Ergic3 2 156008045 to 156018279 10234 + protein coding gene ERGIC and golgi 3
Tssr21135 2 156008068 to 156008085 17 + TSS region transcription start site region 21135
Tssr21136 2 156008088 to 156008138 50 + TSS region transcription start site region 21136
Tssr27025 2 156016747 to 156016765 18 - TSS region transcription start site region 27025
Tssr21137 2 156017655 to 156017674 19 + TSS region transcription start site region 21137
Fer1l4 2 156019139 to 156052947 33808 - protein coding gene fer-1-like 4 (C. elegans)
Tssr27026 2 156052950 to 156052964 14 - TSS region transcription start site region 27026
Tssr27027 2 156052967 to 156053009 42 - TSS region transcription start site region 27027
Gm14240 2 156056128 to 156056673 545 + pseudogene predicted gene 14240
Gm39970 2 156060910 to 156064614 3704 - lncRNA gene predicted gene, 39970
Cpgi12541 2 156065052 to 156066281 1229 CpG island CpG island 12541
Spag4 2 156065153 to 156069501 4348 + protein coding gene sperm associated antigen 4
Tssr21138 2 156065180 to 156065282 102 + TSS region transcription start site region 21138
Tssr21139 2 156065729 to 156065736 7 + TSS region transcription start site region 21139
Tssr21140 2 156065738 to 156065760 22 + TSS region transcription start site region 21140
Cpne1 2 156071842 to 156111965 40123 - protein coding gene copine I
Gm28036 2 156071845 to 156127092 55247 - protein coding gene predicted gene, 28036
Gm37274 2 156084610 to 156086291 1681 - unclassified gene predicted gene, 37274
Rbm12 2 156094882 to 156111965 17083 - protein coding gene RNA binding motif protein 12
Tssr27028 2 156108028 to 156108032 4 - TSS region transcription start site region 27028
Cpgi12542 2 156111213 to 156112152 939 CpG island CpG island 12542
Tssr27029 2 156111913 to 156111940 27 - TSS region transcription start site region 27029
Tssr27030 2 156111954 to 156111965 11 - TSS region transcription start site region 27030
Nfs1 2 156123639 to 156144186 20547 - protein coding gene nitrogen fixation gene 1 (S. cerevisiae)
D2Mit48 2 156124680 to 156124809 129 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 48
Pbwg11 2 156124680 to 156124809 129 QTL postnatal body weight growth 11
D2Dcr112 2 156124687 to 156124802 115 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 112
Tssr27031 2 156135377 to 156135382 5 - TSS region transcription start site region 27031
Cpgi12543 2 156143672 to 156144708 1036 CpG island CpG island 12543
Tssr21141 2 156144023 to 156144035 12 + TSS region transcription start site region 21141
Tssr27032 2 156144138 to 156144192 54 - TSS region transcription start site region 27032
Romo1 2 156144153 to 156145794 1641 + protein coding gene reactive oxygen species modulator 1
Tssr21142 2 156144203 to 156144245 42 + TSS region transcription start site region 21142
Rbm39 2 156147239 to 156180238 32999 - protein coding gene RNA binding motif protein 39
Tssr27033 2 156152806 to 156152811 5 - TSS region transcription start site region 27033
Tssr27034 2 156154294 to 156154295 1 - TSS region transcription start site region 27034
Tssr27035 2 156167708 to 156167754 46 - TSS region transcription start site region 27035
Tssr21143 2 156172923 to 156172991 68 + TSS region transcription start site region 21143
Tssr27036 2 156172991 to 156173024 33 - TSS region transcription start site region 27036
Tssr27037 2 156173176 to 156173190 14 - TSS region transcription start site region 27037
Tssr27038 2 156173727 to 156173731 4 - TSS region transcription start site region 27038
Tssr27039 2 156174523 to 156174536 13 - TSS region transcription start site region 27039
Tssr27040 2 156176571 to 156176586 15 - TSS region transcription start site region 27040
Tssr27041 2 156176786 to 156176818 32 - TSS region transcription start site region 27041
Tssr27042 2 156177763 to 156177780 17 - TSS region transcription start site region 27042
Cpgi12544 2 156179320 to 156180552 1232 CpG island CpG island 12544
Tssr21144 2 156179585 to 156179609 24 + TSS region transcription start site region 21144
Tssr27043 2 156179972 to 156179983 11 - TSS region transcription start site region 27043
Tssr27044 2 156180135 to 156180201 66 - TSS region transcription start site region 27044
A930012N16Rik 2 156180576 to 156181672 1096 unclassified gene RIKEN cDNA A930012N16 gene
Cpgi12545 2 156196245 to 156197297 1052 CpG island CpG island 12545
Tssr27045 2 156196523 to 156196561 38 - TSS region transcription start site region 27045
Phf20 2 156196647 to 156309953 113306 + protein coding gene PHD finger protein 20
Tssr21145 2 156196707 to 156196775 68 + TSS region transcription start site region 21145
Tssr21146 2 156202469 to 156202473 4 + TSS region transcription start site region 21146
Tssr21147 2 156255183 to 156255191 8 + TSS region transcription start site region 21147
Cpgi12546 2 156311503 to 156312947 1444 CpG island CpG island 12546
Tssr21148 2 156311753 to 156311766 13 + TSS region transcription start site region 21148
Scand1 2 156311847 to 156312704 857 - protein coding gene SCAN domain-containing 1
Tssr27046 2 156312287 to 156312302 15 - TSS region transcription start site region 27046
Tssr27047 2 156312311 to 156312323 12 - TSS region transcription start site region 27047
Tssr27048 2 156312347 to 156312356 9 - TSS region transcription start site region 27048
Tssr27049 2 156312395 to 156312434 39 - TSS region transcription start site region 27049
Cnbd2 2 156312402 to 156375638 63236 + protein coding gene cyclic nucleotide binding domain containing 2
Tssr21149 2 156312419 to 156312426 7 + TSS region transcription start site region 21149
Tssr21150 2 156312428 to 156312481 53 + TSS region transcription start site region 21150
Tssr27050 2 156312470 to 156312575 105 - TSS region transcription start site region 27050
Tssr21151 2 156312589 to 156312625 36 + TSS region transcription start site region 21151
Gm14251 2 156322402 to 156322680 278 + pseudogene predicted gene 14251
Gm22759 2 156322552 to 156322647 95 + miRNA gene predicted gene, 22759
Gm14252 2 156332317 to 156339381 7064 - antisense lncRNA gene predicted gene 14252
Cpgi12547 2 156333113 to 156333305 192 CpG island CpG island 12547
Gm14253 2 156347202 to 156347840 638 - pseudogene predicted gene 14253
Tssr27051 2 156347971 to 156348000 29 - TSS region transcription start site region 27051
Tssr27052 2 156348031 to 156348054 23 - TSS region transcription start site region 27052
Gm39972 2 156357022 to 156363034 6012 - protein coding gene predicted gene, 39972
Tssr716 2 156369235 to 156369239 4 + TSS region transcription start site region 716
Tssr21152 2 156371253 to 156371271 18 + TSS region transcription start site region 21152
Gm14170 2 156377925 to 156378968 1043 - antisense lncRNA gene predicted gene 14170
Gm22316 2 156386107 to 156386322 215 + unclassified non-coding RNA gene predicted gene, 22316
Rpl21-ps9 2 156386741 to 156387222 481 + pseudogene ribosomal protein L21, pseudogene 9
2900097C17Rik 2 156388065 to 156392979 4914 - lincRNA gene RIKEN cDNA 2900097C17 gene
Tssr27053 2 156392961 to 156392993 32 - TSS region transcription start site region 27053
Tssr27054 2 156392994 to 156393003 9 - TSS region transcription start site region 27054
Tssr21153 2 156401402 to 156401438 36 + TSS region transcription start site region 21153
1700057D03Rik 2 156401419 to 156402898 1479 unclassified gene RIKEN cDNA 1700057D03 gene
Tssr21154 2 156401442 to 156401449 7 + TSS region transcription start site region 21154
Gm14173 2 156410897 to 156411174 277 - pseudogene predicted gene 14173
Gm22758 2 156410929 to 156411024 95 - miRNA gene predicted gene, 22758
Tssr21155 2 156418675 to 156418708 33 + TSS region transcription start site region 21155
Cpgi12548 2 156420355 to 156421982 1627 CpG island CpG island 12548
Tssr21156 2 156420720 to 156420751 31 + TSS region transcription start site region 21156
Tssr21157 2 156420837 to 156420862 25 + TSS region transcription start site region 21157
Epb41l1 2 156420909 to 156543214 122305 + protein coding gene erythrocyte membrane protein band 4.1 like 1
Tssr21158 2 156421038 to 156421043 5 + TSS region transcription start site region 21158
Tssr21159 2 156421052 to 156421065 13 + TSS region transcription start site region 21159
Tssr21160 2 156421075 to 156421076 1 + TSS region transcription start site region 21160
Tssr21161 2 156421083 to 156421114 31 + TSS region transcription start site region 21161
Tssr21162 2 156421116 to 156421123 7 + TSS region transcription start site region 21162
Tssr21163 2 156421129 to 156421143 14 + TSS region transcription start site region 21163
Tssr21164 2 156421162 to 156421174 12 + TSS region transcription start site region 21164
Tssr21165 2 156432958 to 156432987 29 + TSS region transcription start site region 21165
Tssr21166 2 156432993 to 156433006 13 + TSS region transcription start site region 21166
Gm14225 2 156445033 to 156447608 2575 - antisense lncRNA gene predicted gene 14225
Gm14224 2 156451906 to 156455651 3745 - antisense lncRNA gene predicted gene 14224
Tssr21167 2 156457242 to 156457243 1 + TSS region transcription start site region 21167
Cpgi12549 2 156475152 to 156476293 1141 CpG island CpG island 12549
Tssr21168 2 156475507 to 156475561 54 + TSS region transcription start site region 21168
Tssr21169 2 156475688 to 156475693 5 + TSS region transcription start site region 21169
Tssr21170 2 156475711 to 156475738 27 + TSS region transcription start site region 21170
Tssr21171 2 156475803 to 156475834 31 + TSS region transcription start site region 21171
Tssr21172 2 156475844 to 156475862 18 + TSS region transcription start site region 21172
Tssr717 2 156475891 to 156475894 3 + TSS region transcription start site region 717
Tssr21173 2 156475916 to 156475934 18 + TSS region transcription start site region 21173
Cpgi12550 2 156482293 to 156482495 202 CpG island CpG island 12550
Gm33977 2 156486593 to 156499575 12982 - lncRNA gene predicted gene, 33977
Cpgi12551 2 156494985 to 156495145 160 CpG island CpG island 12551
Tssr21174 2 156530041 to 156530044 3 + TSS region transcription start site region 21174
Tssr21175 2 156538767 to 156538769 2 + TSS region transcription start site region 21175
Tssr21176 2 156540110 to 156540160 50 + TSS region transcription start site region 21176
D2Abb3e 2 156540257 to 156540498 241 DNA segment DNA segment, Chr 2, Abbott 3 expressed
Cpgi12552 2 156547439 to 156547898 459 CpG island CpG island 12552
Tssr21177 2 156547570 to 156547614 44 + TSS region transcription start site region 21177
Aar2 2 156547584 to 156568972 21388 + protein coding gene AAR2 splicing factor homolog
Gm14168 2 156571792 to 156577457 5665 + lincRNA gene predicted gene 14168