Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:143829554-153769563

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1342 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Otx2m2 2 123390053 to 148858457 25468404 QTL orthodenticle homolog 2 modifier 2
nmf62 2 128781466 to 148620946 19839480 heritable phenotypic marker neuroscience mutagenesis facility, 62
Nktcn2 2 138895496 to 146052033 7156537 QTL natural killer T cell numbers 2
Ssrq1 2 142217381 to 146052033 3834652 QTL stress response QTL 1
Bfsp1 2 143826528 to 143863173 36645 - protein coding gene beaded filament structural protein 1, in lens-CP94
Tssr20507 2 143855614 to 143855620 6 + TSS region transcription start site region 20507
Rps13-ps6 2 143855649 to 143856076 427 + pseudogene ribosomal protein S13, pseudogene 6
Tssr26568 2 143860470 to 143860479 9 - TSS region transcription start site region 26568
Cpgi12347 2 143862304 to 143863230 926 CpG island CpG island 12347
Tssr26569 2 143862933 to 143862950 17 - TSS region transcription start site region 26569
Gm33648 2 143863279 to 143872816 9537 + lncRNA gene predicted gene, 33648
Gm11673 2 143877949 to 143878279 330 + pseudogene predicted gene 11673
Gm11686 2 143881177 to 143881509 332 + pseudogene predicted gene 11686
Tssr20508 2 143912527 to 143912531 4 + TSS region transcription start site region 20508
Cpgi12348 2 143914807 to 143916045 1238 CpG island CpG island 12348
Tssr20509 2 143915273 to 143915337 64 + TSS region transcription start site region 20509
Dstn 2 143915331 to 143943324 27993 + protein coding gene destrin
Tssr20510 2 143915503 to 143915535 32 + TSS region transcription start site region 20510
Tssr20511 2 143915541 to 143915568 27 + TSS region transcription start site region 20511
Tssr20512 2 143919206 to 143919211 5 + TSS region transcription start site region 20512
D2Dcr90 2 143931519 to 143931628 109 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 90
Gnf1 2 143931525 to 169276004 25344479 QTL growth and fatness 1
Bsbob 2 143931525 to 165823099 21891574 QTL BSB obesity
D2Mit194 2 143931525 to 143931638 113 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 194
Wg2d 2 143931525 to 160461088 16529563 QTL weight gain in high growth mice 2d
Tssr20513 2 143936253 to 143936257 4 + TSS region transcription start site region 20513
Tssr20514 2 143938545 to 143938589 44 + TSS region transcription start site region 20514
Gm33804 2 143940035 to 143940712 677 + lncRNA gene predicted gene, 33804
Rrbp1 2 143947395 to 144011263 63868 - protein coding gene ribosome binding protein 1
Tssr26570 2 143948427 to 143948444 17 - TSS region transcription start site region 26570
Tssr26571 2 143952265 to 143952281 16 - TSS region transcription start site region 26571
Tssr26572 2 143983164 to 143983172 8 - TSS region transcription start site region 26572
Tssr26573 2 143988452 to 143988475 23 - TSS region transcription start site region 26573
Tssr26574 2 143988974 to 143988985 11 - TSS region transcription start site region 26574
Tssr26575 2 143989002 to 143989017 15 - TSS region transcription start site region 26575
Tssr26576 2 143989061 to 143989077 16 - TSS region transcription start site region 26576
Tssr26577 2 143989094 to 143989108 14 - TSS region transcription start site region 26577
Tssr26578 2 143989334 to 143989344 10 - TSS region transcription start site region 26578
Tssr26579 2 143989672 to 143989693 21 - TSS region transcription start site region 26579
Tssr20515 2 143989781 to 143989824 43 + TSS region transcription start site region 20515
Tssr26580 2 143989879 to 143989903 24 - TSS region transcription start site region 26580
Tssr20516 2 143989980 to 143990064 84 + TSS region transcription start site region 20516
Tssr26581 2 143990119 to 143990150 31 - TSS region transcription start site region 26581
Tssr26582 2 143990177 to 143990221 44 - TSS region transcription start site region 26582
Tssr26583 2 144009202 to 144009218 16 - TSS region transcription start site region 26583
Cpgi12349 2 144009767 to 144011735 1968 CpG island CpG island 12349
Tssr26584 2 144010810 to 144010883 73 - TSS region transcription start site region 26584
Tssr26585 2 144011172 to 144011197 25 - TSS region transcription start site region 26585
Tssr26586 2 144011202 to 144011236 34 - TSS region transcription start site region 26586
Tssr20517 2 144033062 to 144033067 5 + TSS region transcription start site region 20517
Tssr20518 2 144033077 to 144033110 33 + TSS region transcription start site region 20518
Banf2 2 144033102 to 144073979 40877 + protein coding gene barrier to autointegration factor 2
Tssr20519 2 144033111 to 144033123 12 + TSS region transcription start site region 20519
Tssr20520 2 144033127 to 144033134 7 + TSS region transcription start site region 20520
D2Dcr91 2 144037430 to 144037525 95 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 91
Banf2os 2 144059138 to 144068806 9668 - antisense lncRNA gene barrier to autointegration factor 2, opposite strand
D2Dcr92 2 144104929 to 144105033 104 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 92
D2Dcr93 2 144105023 to 144105120 97 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 93
Tssr20521 2 144116178 to 144116189 11 + TSS region transcription start site region 20521
Tssr677 2 144116203 to 144116222 19 + TSS region transcription start site region 677
Gm11687 2 144142488 to 144143373 885 - pseudogene predicted gene 11687
D2Dcr94 2 144159438 to 144159528 90 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 94
Cpgi12350 2 144165455 to 144165886 431 CpG island CpG island 12350
Tssr20522 2 144165499 to 144165514 15 + TSS region transcription start site region 20522
Gm5535 2 144173150 to 144189290 16140 - lincRNA gene predicted gene 5535
D2Dcr95 2 144181998 to 144182149 151 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 95
D2Dcr96 2 144210087 to 144210250 163 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 96
4930444E06Rik 2 144243241 to 144244849 1608 + antisense lncRNA gene RIKEN cDNA 4930444E06 gene
Snx5 2 144250123 to 144270902 20779 - protein coding gene sorting nexin 5
Tssr26587 2 144253743 to 144253764 21 - TSS region transcription start site region 26587
Tssr26588 2 144254757 to 144254789 32 - TSS region transcription start site region 26588
Tssr26589 2 144255394 to 144255412 18 - TSS region transcription start site region 26589
Tssr26590 2 144255592 to 144255606 14 - TSS region transcription start site region 26590
Tssr26591 2 144257130 to 144257159 29 - TSS region transcription start site region 26591
Tssr26592 2 144260677 to 144260680 3 - TSS region transcription start site region 26592
Gm11688 2 144261234 to 144261541 307 - pseudogene predicted gene 11688
Gm26165 2 144261589 to 144261726 137 - snoRNA gene predicted gene, 26165
Snord17 2 144265982 to 144266202 220 - snoRNA gene small nucleolar RNA, C/D box 17
Tssr20523 2 144266077 to 144266095 18 + TSS region transcription start site region 20523
Tssr26593 2 144266186 to 144266218 32 - TSS region transcription start site region 26593
Tssr26594 2 144270066 to 144270068 2 - TSS region transcription start site region 26594
Cpgi12351 2 144270116 to 144271365 1249 CpG island CpG island 12351
Tssr26595 2 144270440 to 144270486 46 - TSS region transcription start site region 26595
Tssr26596 2 144270504 to 144270533 29 - TSS region transcription start site region 26596
Tssr20524 2 144270574 to 144270591 17 + TSS region transcription start site region 20524
Tssr20525 2 144270622 to 144270672 50 + TSS region transcription start site region 20525
Tssr26597 2 144270780 to 144270800 20 - TSS region transcription start site region 26597
Tssr26598 2 144270836 to 144270847 11 - TSS region transcription start site region 26598
Tssr26599 2 144270852 to 144270863 11 - TSS region transcription start site region 26599
Mgme1 2 144270856 to 144281232 10376 + protein coding gene mitochondrial genome maintenance exonuclease 1
Tssr20526 2 144270878 to 144270949 71 + TSS region transcription start site region 20526
Tssr20527 2 144271011 to 144271055 44 + TSS region transcription start site region 20527
Tssr20528 2 144271628 to 144271633 5 + TSS region transcription start site region 20528
Ovol2 2 144305175 to 144332080 26905 - protein coding gene ovo like zinc finger 2
D2Mit491 2 144313458 to 144313580 122 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 491
D2Dcr97 2 144313468 to 144313563 95 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 97
Cpgi12352 2 144330364 to 144332263 1899 CpG island CpG island 12352
Tssr26600 2 144330770 to 144330781 11 - TSS region transcription start site region 26600
Tssr26601 2 144331355 to 144331367 12 - TSS region transcription start site region 26601
Tssr26602 2 144331371 to 144331392 21 - TSS region transcription start site region 26602
Tssr26603 2 144331408 to 144331414 6 - TSS region transcription start site region 26603
Tssr678 2 144331440 to 144331445 5 + TSS region transcription start site region 678
Tssr679 2 144331451 to 144331454 3 + TSS region transcription start site region 679
1700108N11Rik 2 144331459 to 144332639 1180 + antisense lncRNA gene RIKEN cDNA 1700108N11 gene
Tssr20529 2 144331478 to 144331483 5 + TSS region transcription start site region 20529
Tssr20530 2 144331486 to 144331560 74 + TSS region transcription start site region 20530
Cpgi12353 2 144333047 to 144333516 469 CpG island CpG island 12353
Gm34181 2 144337403 to 144344310 6907 + lncRNA gene predicted gene, 34181
Tssr20531 2 144337436 to 144337445 9 + TSS region transcription start site region 20531
Tssr20532 2 144337813 to 144337832 19 + TSS region transcription start site region 20532
Gm11700 2 144355917 to 144356319 402 + pseudogene predicted gene 11700
Gm11701 2 144364703 to 144365681 978 - pseudogene predicted gene 11701
Tssr26604 2 144365681 to 144365686 5 - TSS region transcription start site region 26604
Cpgi12354 2 144368508 to 144369484 976 CpG island CpG island 12354
Tssr20533 2 144368866 to 144368884 18 + TSS region transcription start site region 20533
Tssr20534 2 144368908 to 144368953 45 + TSS region transcription start site region 20534
Tssr20535 2 144368961 to 144368994 33 + TSS region transcription start site region 20535
Pet117 2 144368983 to 144373337 4354 + protein coding gene PET117 homolog
Kat14 2 144369032 to 144407675 38643 + protein coding gene lysine acetyltransferase 14
Tssr20536 2 144369034 to 144369046 12 + TSS region transcription start site region 20536
Tssr20537 2 144375355 to 144375358 3 + TSS region transcription start site region 20537
Gm46768 2 144415963 to 144421174 5211 - lncRNA gene predicted gene, 46768
Cpgi12355 2 144458996 to 144459266 270 CpG island CpG island 12355
Zfp133-ps 2 144459280 to 144467794 8514 + pseudogene zinc finger protein 133, pseudogene
Tssr20538 2 144464394 to 144464433 39 + TSS region transcription start site region 20538
Gm38402 2 144465176 to 144466732 1556 + pseudogene predicted gene, 38402
Tssr20539 2 144466331 to 144466333 2 + TSS region transcription start site region 20539
Dzank1 2 144470557 to 144527414 56857 - protein coding gene double zinc ribbon and ankyrin repeat domains 1
Tssr26605 2 144474429 to 144474439 10 - TSS region transcription start site region 26605
Tssr26606 2 144474871 to 144474882 11 - TSS region transcription start site region 26606
Cpgi12356 2 144527102 to 144528111 1009 CpG island CpG island 12356
Tssr26607 2 144527341 to 144527424 83 - TSS region transcription start site region 26607
Tssr26608 2 144527425 to 144527432 7 - TSS region transcription start site region 26608
Tssr26609 2 144527439 to 144527450 11 - TSS region transcription start site region 26609
Tssr26610 2 144527501 to 144527512 11 - TSS region transcription start site region 26610
Tssr20540 2 144527515 to 144527527 12 + TSS region transcription start site region 20540
Tssr26611 2 144527526 to 144527537 11 - TSS region transcription start site region 26611
Tssr20541 2 144527738 to 144527773 35 + TSS region transcription start site region 20541
Polr3f 2 144527745 to 144541779 14034 + protein coding gene polymerase (RNA) III (DNA directed) polypeptide F
Tssr20542 2 144527791 to 144527802 11 + TSS region transcription start site region 20542
Rbbp9 2 144542265 to 144550859 8594 - protein coding gene retinoblastoma binding protein 9, serine hydrolase
Cpgi12357 2 144550534 to 144550811 277 CpG island CpG island 12357
Tssr26612 2 144550777 to 144550864 87 - TSS region transcription start site region 26612
Gm34292 2 144555693 to 144564773 9080 - lncRNA gene predicted gene, 34292
Cpgi12358 2 144555742 to 144556646 904 CpG island CpG island 12358
Sec23b 2 144556229 to 144590749 34520 + protein coding gene SEC23 homolog B, COPII coat complex component
Tssr20543 2 144556235 to 144556298 63 + TSS region transcription start site region 20543
Tssr20544 2 144556306 to 144556323 17 + TSS region transcription start site region 20544
Cpgi12359 2 144593959 to 144594538 579 CpG island CpG island 12359
Tssr20545 2 144594056 to 144594083 27 + TSS region transcription start site region 20545
Smim26 2 144594065 to 144595365 1300 + protein coding gene small integral membrane protein 26
Cpgi12360 2 144599777 to 144600460 683 CpG island CpG island 12360
Tssr20546 2 144599946 to 144600039 93 + TSS region transcription start site region 20546
Dtd1 2 144599953 to 144768747 168794 + protein coding gene D-tyrosyl-tRNA deacylase 1
Gm24823 2 144618143 to 144618233 90 - miRNA gene predicted gene, 24823
D2Mit403 2 144673941 to 144674063 122 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 403
Lore2 2 144673941 to 181254801 36580860 QTL loss of righting induced by ethanol 2
D2Mit403.1 2 144674034 to 144674188 154 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 403.1
Tssr20547 2 144697331 to 144697333 2 + TSS region transcription start site region 20547
Tssr680 2 144698217 to 144698226 9 + TSS region transcription start site region 680
Tssr20548 2 144698241 to 144698256 15 + TSS region transcription start site region 20548
Tssr26613 2 144714558 to 144714562 4 - TSS region transcription start site region 26613
Tssr20549 2 144714783 to 144714794 11 + TSS region transcription start site region 20549
Tssr20550 2 144714845 to 144714859 14 + TSS region transcription start site region 20550
Tssr26614 2 144720600 to 144720607 7 - TSS region transcription start site region 26614
Tssr20551 2 144738410 to 144738430 20 + TSS region transcription start site region 20551
Tssr20552 2 144740025 to 144740034 9 + TSS region transcription start site region 20552
Tssr20553 2 144746621 to 144746626 5 + TSS region transcription start site region 20553
Gm11743 2 144756408 to 144758612 2204 + pseudogene predicted gene 11743
Gm39951 2 144770843 to 144796107 25264 + lncRNA gene predicted gene, 39951
Bdln3 2 144822099 to 144822198 99 QTL body length 3
Bwq5 2 144822099 to 144822198 99 QTL body weight, QTL 5
D2Mit168 2 144822099 to 144822198 99 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 168
D2Dcr98 2 144822101 to 144822204 103 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 98
D2Mit168.2 2 144822197 to 144822326 129 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 168.2
Scp2d1 2 144823666 to 144824415 749 + protein coding gene SCP2 sterol-binding domain containing 1
Gm39952 2 144828809 to 144920588 91779 + lncRNA gene predicted gene, 39952
Gm11746 2 144930858 to 144931678 820 - pseudogene predicted gene 11746
D2Dcr99 2 144982437 to 144982535 98 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 99
D2Mit404.1 2 145040759 to 145040895 136 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 404.1
D2Mit404 2 145040900 to 145041098 198 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 404
D2Ertd397e 2 145147358 to 145147567 209 DNA segment DNA segment, Chr 2, ERATO Doi 397, expressed
Cpgi12361 2 145166859 to 145168735 1876 CpG island CpG island 12361
Tssr20554 2 145167505 to 145167520 15 + TSS region transcription start site region 20554
Tssr20555 2 145167706 to 145167773 67 + TSS region transcription start site region 20555
Slc24a3 2 145167754 to 145642166 474412 + protein coding gene solute carrier family 24 (sodium/potassium/calcium exchanger), member 3
Tssr20556 2 145167846 to 145167900 54 + TSS region transcription start site region 20556
Tssr20557 2 145167904 to 145167982 78 + TSS region transcription start site region 20557
Tssr20558 2 145186409 to 145186414 5 + TSS region transcription start site region 20558
Gm14093 2 145337648 to 145379381 41733 + sense intronic lncRNA gene predicted gene 14093
Gm22731 2 145352843 to 145352936 93 + rRNA gene predicted gene, 22731
D2Ertd105e 2 145382985 to 145383184 199 DNA segment DNA segment, Chr 2, ERATO Doi 105, expressed
Tssr20559 2 145460241 to 145460246 5 + TSS region transcription start site region 20559
D2Dcr100 2 145470549 to 145470672 123 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 100
D2Mit109 2 145470552 to 145470727 175 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 109
Lith1 2 145470727 to 45457623 -100013104 QTL lithogenic gene 1
Gm22390 2 145481407 to 145481731 324 - unclassified non-coding RNA gene predicted gene, 22390
Gm11759 2 145510194 to 145510657 463 - pseudogene predicted gene 11759
Gm14092 2 145550652 to 145554982 4330 - antisense lncRNA gene predicted gene 14092
Gm19115 2 145567050 to 145567701 651 + pseudogene predicted gene, 19115