Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:136588240-142760390

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236 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
El2 2 122376665 to 142690215 20313550 QTL epilepsy 2
Gm32659 2 136533833 to 136714163 180330 - lncRNA gene predicted gene, 32659
Cpgi12327 2 136678590 to 136679118 528 CpG island CpG island 12327
Gm36967 2 136679961 to 136680226 265 + unclassified gene predicted gene, 36967
Cpgi12328 2 136712002 to 136712385 383 CpG island CpG island 12328
Tssr20405 2 136713295 to 136713313 18 + TSS region transcription start site region 20405
Tssr20406 2 136713444 to 136713492 48 + TSS region transcription start site region 20406
Snap25 2 136713453 to 136782428 68975 + protein coding gene synaptosomal-associated protein 25
Tssr20407 2 136713507 to 136713528 21 + TSS region transcription start site region 20407
Tssr20408 2 136713540 to 136713556 16 + TSS region transcription start site region 20408
Cpgi12329 2 136714075 to 136714433 358 CpG island CpG island 12329
Tssr20409 2 136723774 to 136723778 4 + TSS region transcription start site region 20409
Gm14053 2 136744146 to 136744615 469 - pseudogene predicted gene 14053
Tssr20410 2 136756071 to 136756142 71 + TSS region transcription start site region 20410
Tssr20411 2 136758304 to 136758330 26 + TSS region transcription start site region 20411
Tssr20412 2 136764036 to 136764055 19 + TSS region transcription start site region 20412
Tssr20413 2 136765389 to 136765402 13 + TSS region transcription start site region 20413
Tssr20414 2 136770127 to 136770142 15 + TSS region transcription start site region 20414
Tssr20415 2 136770146 to 136770152 6 + TSS region transcription start site region 20415
Tssr20416 2 136772979 to 136772982 3 + TSS region transcription start site region 20416
Tssr20417 2 136773924 to 136773961 37 + TSS region transcription start site region 20417
Tssr20418 2 136773973 to 136773999 26 + TSS region transcription start site region 20418
Tssr20419 2 136777330 to 136777341 11 + TSS region transcription start site region 20419
Tssr20420 2 136777377 to 136777448 71 + TSS region transcription start site region 20420
Tssr20421 2 136781071 to 136781081 10 + TSS region transcription start site region 20421
Tssr20422 2 136781127 to 136781164 37 + TSS region transcription start site region 20422
Tssr20423 2 136781172 to 136781224 52 + TSS region transcription start site region 20423
Tssr26521 2 136781228 to 136781274 46 - TSS region transcription start site region 26521
Tssr20424 2 136781286 to 136781293 7 + TSS region transcription start site region 20424
Tssr20425 2 136781361 to 136781370 9 + TSS region transcription start site region 20425
Tssr20426 2 136781398 to 136781420 22 + TSS region transcription start site region 20426
Tssr20427 2 136781457 to 136781472 15 + TSS region transcription start site region 20427
Tssr20428 2 136781589 to 136781607 18 + TSS region transcription start site region 20428
Tssr20429 2 136781761 to 136781770 9 + TSS region transcription start site region 20429
Tssr20430 2 136781822 to 136781827 5 + TSS region transcription start site region 20430
Tssr20431 2 136781837 to 136781842 5 + TSS region transcription start site region 20431
Tssr20432 2 136781881 to 136781888 7 + TSS region transcription start site region 20432
Tssr20433 2 136781935 to 136781942 7 + TSS region transcription start site region 20433
Gm39943 2 136793417 to 136805072 11655 - lncRNA gene predicted gene, 39943
Gm46767 2 136805208 to 136828496 23288 - lncRNA gene predicted gene, 46767
Tssr20434 2 136809344 to 136809350 6 + TSS region transcription start site region 20434
Mkks 2 136873780 to 136891389 17609 - protein coding gene McKusick-Kaufman syndrome
Cpgi12330 2 136890863 to 136891685 822 CpG island CpG island 12330
Tssr26522 2 136891115 to 136891122 7 - TSS region transcription start site region 26522
Tssr26523 2 136891131 to 136891186 55 - TSS region transcription start site region 26523
Slx4ip 2 136891218 to 137071950 180732 + protein coding gene SLX4 interacting protein
Tssr26524 2 136891363 to 136891413 50 - TSS region transcription start site region 26524
Tssr20435 2 136891563 to 136891599 36 + TSS region transcription start site region 20435
Tssr20436 2 136891601 to 136891615 14 + TSS region transcription start site region 20436
Cpgi12331 2 136892026 to 136892438 412 CpG island CpG island 12331
Tssr20437 2 136892208 to 136892241 33 + TSS region transcription start site region 20437
Tssr20438 2 136892249 to 136892272 23 + TSS region transcription start site region 20438
Tssr20439 2 136892280 to 136892294 14 + TSS region transcription start site region 20439
Tssr20440 2 136910151 to 136910171 20 + TSS region transcription start site region 20440
Tssr20441 2 136910177 to 136910188 11 + TSS region transcription start site region 20441
Tssr20442 2 136910625 to 136910638 13 + TSS region transcription start site region 20442
Tssr20443 2 136911009 to 136911029 20 + TSS region transcription start site region 20443
Tssr20444 2 136911231 to 136911243 12 + TSS region transcription start site region 20444
Tssr20445 2 136911392 to 136911403 11 + TSS region transcription start site region 20445
Tssr20446 2 136915361 to 136915381 20 + TSS region transcription start site region 20446
Tssr20447 2 136922291 to 136922298 7 + TSS region transcription start site region 20447
Tssr20448 2 136935027 to 136935030 3 + TSS region transcription start site region 20448
Tssr20449 2 136944043 to 136944047 4 + TSS region transcription start site region 20449
Gm38479 2 136944077 to 136947476 3399 + lncRNA gene predicted gene, 38479
D2Dcr81 2 136961903 to 136962017 114 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 81
Vclq1 2 137000000 to 62000000 -75000000 QTL curvilinear velocity QTL 1
Tssr20450 2 137028101 to 137028112 11 + TSS region transcription start site region 20450
Jag1 2 137081451 to 137116520 35069 - protein coding gene jagged 1
Tssr26525 2 137082008 to 137082022 14 - TSS region transcription start site region 26525
Tssr26526 2 137082148 to 137082153 5 - TSS region transcription start site region 26526
Tssr26527 2 137093450 to 137093461 11 - TSS region transcription start site region 26527
Tssr26528 2 137095568 to 137095572 4 - TSS region transcription start site region 26528
Tssr670 2 137095738 to 137095776 38 - TSS region transcription start site region 670
Cpgi12332 2 137114239 to 137117735 3496 CpG island CpG island 12332
Tssr26529 2 137116333 to 137116350 17 - TSS region transcription start site region 26529
Tssr26530 2 137116395 to 137116406 11 - TSS region transcription start site region 26530
Tssr26531 2 137116442 to 137116451 9 - TSS region transcription start site region 26531
Tssr26532 2 137116624 to 137116628 4 - TSS region transcription start site region 26532
Tssr26533 2 137116721 to 137116735 14 - TSS region transcription start site region 26533
Tssr26534 2 137116755 to 137116773 18 - TSS region transcription start site region 26534
Tssr20451 2 137194354 to 137194357 3 + TSS region transcription start site region 20451
Gm28214 2 137198983 to 137199732 749 + lincRNA gene predicted gene 28214
Gm39944 2 137263996 to 137279539 15543 + lncRNA gene predicted gene, 39944
Gm14055 2 137288503 to 137329126 40623 + lincRNA gene predicted gene 14055
Tssr671 2 137528351 to 137528352 1 + TSS region transcription start site region 671
Tssr20452 2 137663424 to 137663436 12 + TSS region transcription start site region 20452
Gm14064 2 137663425 to 137722403 58978 + lincRNA gene predicted gene 14064
Tssr20453 2 137676209 to 137676210 1 + TSS region transcription start site region 20453
Tssr20454 2 137855850 to 137855856 6 + TSS region transcription start site region 20454
Gm14062 2 137871335 to 137876831 5496 - lincRNA gene predicted gene 14062
Tssr26535 2 138081524 to 138081526 2 - TSS region transcription start site region 26535
D2Mit108 2 138084327 to 138084516 189 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 108
Tssr26536 2 138112198 to 138112201 3 - TSS region transcription start site region 26536
D2Dcr82 2 138247548 to 138247648 100 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 82
Cpgi12333 2 138256467 to 138257349 882 CpG island CpG island 12333
Tssr20455 2 138256530 to 138256615 85 + TSS region transcription start site region 20455
Btbd3 2 138256565 to 138589292 332727 + protein coding gene BTB (POZ) domain containing 3
Tssr20456 2 138256617 to 138256677 60 + TSS region transcription start site region 20456
Tssr20457 2 138278396 to 138278407 11 + TSS region transcription start site region 20457
Tssr20458 2 138278469 to 138278480 11 + TSS region transcription start site region 20458
Tssr20459 2 138278481 to 138278531 50 + TSS region transcription start site region 20459
Tssr672 2 138279049 to 138279061 12 + TSS region transcription start site region 672
Cpgi12334 2 138280311 to 138280485 174 CpG island CpG island 12334
D2Mit353 2 138299435 to 138299634 199 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 353
Tssr20460 2 138365622 to 138365631 9 + TSS region transcription start site region 20460
Gm40022 2 138517959 to 138523711 5752 + pseudogene predicted gene, 40022
Gm14061 2 138589392 to 138649122 59730 + lincRNA gene predicted gene 14061
D2Mit209 2 138700655 to 138700775 120 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 209
D2Mit209.2 2 138700750 to 138700863 113 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 209.2
Tssr20461 2 138714629 to 138714640 11 + TSS region transcription start site region 20461
Mir1952 2 138819929 to 138820007 78 + miRNA gene microRNA 1952
Gm14065 2 138872023 to 138872607 584 + pseudogene predicted gene 14065
Nktcn2 2 138895496 to 146052033 7156537 QTL natural killer T cell numbers 2
D2Mit490 2 138895496 to 138895600 104 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 490
Gm14067 2 138916619 to 138916932 313 - pseudogene predicted gene 14067
Gm14069 2 139175897 to 139176125 228 - pseudogene predicted gene 14069
Gm14066 2 139256344 to 139306924 50580 - unclassified non-coding RNA gene predicted gene 14066
Gm14071 2 139383832 to 139384340 508 - pseudogene predicted gene 14071
D2Mit339 2 139444611 to 139444750 139 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 339
Sptlc3 2 139493913 to 139637674 143761 + protein coding gene serine palmitoyltransferase, long chain base subunit 3
Tssr20462 2 139493914 to 139493923 9 + TSS region transcription start site region 20462
Tssr20463 2 139493932 to 139493937 5 + TSS region transcription start site region 20463
Tssr20464 2 139493954 to 139493972 18 + TSS region transcription start site region 20464
Tssr20465 2 139493976 to 139494015 39 + TSS region transcription start site region 20465
Tssr20466 2 139494038 to 139494050 12 + TSS region transcription start site region 20466
Tssr20467 2 139494053 to 139494063 10 + TSS region transcription start site region 20467
Tssr20468 2 139494118 to 139494175 57 + TSS region transcription start site region 20468
Tssr20469 2 139494192 to 139494197 5 + TSS region transcription start site region 20469
Tssr20470 2 139546017 to 139546020 3 + TSS region transcription start site region 20470
Tssr20471 2 139579468 to 139579478 10 + TSS region transcription start site region 20471
Gm27385 2 139588227 to 139588330 103 + snRNA gene predicted gene, 27385
Tssr20472 2 139601218 to 139601221 3 + TSS region transcription start site region 20472
3021401L19Rik 2 139673240 to 139675390 2150 unclassified gene RIKEN cDNA 3021401L19 gene
Cpgi12335 2 139677027 to 139679191 2164 CpG island CpG island 12335
Tssr20473 2 139677177 to 139677194 17 + TSS region transcription start site region 20473
Tssr20474 2 139677701 to 139677720 19 + TSS region transcription start site region 20474
Ism1 2 139678178 to 139758581 80403 + protein coding gene isthmin 1, angiogenesis inhibitor
Tssr20475 2 139678637 to 139678680 43 + TSS region transcription start site region 20475
Cpgi12336 2 139745821 to 139746031 210 CpG island CpG island 12336
Tasp1 2 139833480 to 140066805 233325 - protein coding gene taspase, threonine aspartase 1
Gm14070 2 139863297 to 139863724 427 + pseudogene predicted gene 14070
D2Dcr83 2 140007644 to 140007744 100 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 83
Tssr26537 2 140019458 to 140019464 6 - TSS region transcription start site region 26537
D2Dcr84 2 140034964 to 140035061 97 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 84
D2Mit138 2 140041095 to 140041211 116 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 138
Hrtfm5 2 140041095 to 140041211 116 QTL heart failure modifier 5
Tssr26538 2 140042122 to 140042132 10 - TSS region transcription start site region 26538
Tssr26539 2 140042139 to 140042170 31 - TSS region transcription start site region 26539
Tssr26540 2 140042172 to 140042192 20 - TSS region transcription start site region 26540
Tssr20476 2 140056007 to 140056020 13 + TSS region transcription start site region 20476
Tssr20477 2 140056035 to 140056047 12 + TSS region transcription start site region 20477
Tssr20478 2 140056052 to 140056063 11 + TSS region transcription start site region 20478
Tssr26541 2 140060215 to 140060222 7 - TSS region transcription start site region 26541
Tssr26542 2 140065825 to 140065847 22 - TSS region transcription start site region 26542
Cpgi12337 2 140066316 to 140067208 892 CpG island CpG island 12337
Tssr26543 2 140066661 to 140066796 135 - TSS region transcription start site region 26543
Rps19-ps7 2 140073032 to 140073469 437 - pseudogene ribosomal protein S19, pseudogene 7
Gm14073 2 140110022 to 140110402 380 - pseudogene predicted gene 14073
Esf1 2 140119881 to 140170558 50677 - protein coding gene ESF1 nucleolar pre-rRNA processing protein homolog
Gm17374 2 140152043 to 140153532 1489 + protein coding gene predicted gene, 17374
Cpgi12338 2 140170197 to 140171089 892 CpG island CpG island 12338
Tssr26544 2 140170528 to 140170569 41 - TSS region transcription start site region 26544
Tssr20479 2 140170641 to 140170701 60 + TSS region transcription start site region 20479
Ndufaf5 2 140170649 to 140203689 33040 + protein coding gene NADH:ubiquinone oxidoreductase complex assembly factor 5
Tssr20480 2 140171016 to 140171043 27 + TSS region transcription start site region 20480
Sel1l2 2 140229855 to 140389706 159851 - protein coding gene sel-1 suppressor of lin-12-like 2 (C. elegans)
Tssr26545 2 140389698 to 140389729 31 - TSS region transcription start site region 26545
Tssr26546 2 140389731 to 140389738 7 - TSS region transcription start site region 26546
Cpgi12339 2 140394951 to 140396428 1477 CpG island CpG island 12339
Macrod2 2 140395356 to 142392966 1997610 + protein coding gene MACRO domain containing 2
Tssr20481 2 140395421 to 140395438 17 + TSS region transcription start site region 20481
Tssr20482 2 140395446 to 140395465 19 + TSS region transcription start site region 20482
Gm23846 2 140440541 to 140440647 106 - snRNA gene predicted gene, 23846
Tssr20483 2 140589531 to 140589537 6 + TSS region transcription start site region 20483
Tssr26547 2 140592374 to 140592375 1 - TSS region transcription start site region 26547
Tssr20484 2 140598485 to 140598496 11 + TSS region transcription start site region 20484
Gm39948 2 140634204 to 140645746 11542 + lncRNA gene predicted gene, 39948
Flrt3 2 140658198 to 140671476 13278 - protein coding gene fibronectin leucine rich transmembrane protein 3
Tssr26548 2 140659688 to 140659715 27 - TSS region transcription start site region 26548
Tssr26549 2 140660368 to 140660388 20 - TSS region transcription start site region 26549
Cpgi12340 2 140671348 to 140671510 162 CpG island CpG island 12340
Tssr673 2 140671380 to 140671387 7 - TSS region transcription start site region 673
Tssr26550 2 140671406 to 140671427 21 - TSS region transcription start site region 26550
Tssr26551 2 140671428 to 140671439 11 - TSS region transcription start site region 26551
Tssr26552 2 140671440 to 140671458 18 - TSS region transcription start site region 26552
Tssr26553 2 140671462 to 140671476 14 - TSS region transcription start site region 26553
Tssr26554 2 140773552 to 140773555 3 - TSS region transcription start site region 26554
Tssr20485 2 140783689 to 140783702 13 + TSS region transcription start site region 20485
Tssr26555 2 140790432 to 140790449 17 - TSS region transcription start site region 26555
Calr-ps 2 140955765 to 140956249 484 - pseudogene calreticulin, pseudogene
Tssr26556 2 140955957 to 140955986 29 - TSS region transcription start site region 26556
Tssr26557 2 140956059 to 140956071 12 - TSS region transcription start site region 26557
Tssr20486 2 140965927 to 140965946 19 + TSS region transcription start site region 20486
D2Dcr85 2 141008401 to 141008513 112 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 85
D2Dcr86 2 141019932 to 141020027 95 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 86
Pgia2 2 141095391 to 141095504 113 QTL proteoglycan induced arthritis 2
D2Mit166 2 141095391 to 141095504 113 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 166
Zcchc9-ps 2 141127280 to 141128062 782 + pseudogene zinc finger, CCHC domain containing 9, pseudogene
2900060K15Rik 2 141175069 to 141176396 1327 unclassified gene RIKEN cDNA 2900060K15 gene
Tssr20487 2 141179999 to 141180006 7 + TSS region transcription start site region 20487