Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:135608954-143378972

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337 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
El2 2 122376665 to 142690215 20313550 QTL epilepsy 2
Tssr20368 2 135646517 to 135646529 12 + TSS region transcription start site region 20368
Platr3 2 135648907 to 135652063 3156 + lincRNA gene pluripotency associated transcript 3
Cpgi12321 2 135658505 to 135660122 1617 CpG island CpG island 12321
Plcb4 2 135659011 to 136014593 355582 + protein coding gene phospholipase C, beta 4
Tssr20369 2 135659159 to 135659174 15 + TSS region transcription start site region 20369
Tssr20370 2 135659293 to 135659357 64 + TSS region transcription start site region 20370
Tssr20371 2 135659540 to 135659591 51 + TSS region transcription start site region 20371
Tssr20372 2 135659593 to 135659604 11 + TSS region transcription start site region 20372
Tssr20373 2 135659625 to 135659650 25 + TSS region transcription start site region 20373
Tssr20374 2 135659685 to 135659713 28 + TSS region transcription start site region 20374
Gm14209 2 135669453 to 135670425 972 + sense intronic lncRNA gene predicted gene 14209
Tssr20375 2 135674247 to 135674275 28 + TSS region transcription start site region 20375
Gm14211 2 135686174 to 135693154 6980 - lincRNA gene predicted gene 14211
Tssr20376 2 135764880 to 135764908 28 + TSS region transcription start site region 20376
Tssr20377 2 135764910 to 135764935 25 + TSS region transcription start site region 20377
Tssr20378 2 135764958 to 135764973 15 + TSS region transcription start site region 20378
Gm14210 2 135811945 to 135812927 982 - lincRNA gene predicted gene 14210
Tssr20379 2 135929503 to 135929512 9 + TSS region transcription start site region 20379
Tssr20380 2 135987604 to 135987606 2 + TSS region transcription start site region 20380
Tssr20381 2 136007342 to 136007356 14 + TSS region transcription start site region 20381
Tssr666 2 136012008 to 136012014 6 + TSS region transcription start site region 666
Gm26227 2 136026151 to 136026251 100 - snRNA gene predicted gene, 26227
Tssr20382 2 136052180 to 136052199 19 + TSS region transcription start site region 20382
Lamp5 2 136052239 to 136069917 17678 + protein coding gene lysosomal-associated membrane protein family, member 5
Tssr20383 2 136057711 to 136057723 12 + TSS region transcription start site region 20383
Tssr20384 2 136057886 to 136057895 9 + TSS region transcription start site region 20384
Tssr20385 2 136057955 to 136057981 26 + TSS region transcription start site region 20385
Tssr20386 2 136058080 to 136058102 22 + TSS region transcription start site region 20386
Cpgi12322 2 136058095 to 136058388 293 CpG island CpG island 12322
Tssr667 2 136058104 to 136058107 3 + TSS region transcription start site region 667
Tssr20387 2 136058138 to 136058149 11 + TSS region transcription start site region 20387
Tssr20388 2 136058167 to 136058176 9 + TSS region transcription start site region 20388
Tssr20389 2 136058207 to 136058212 5 + TSS region transcription start site region 20389
Tssr20390 2 136058224 to 136058237 13 + TSS region transcription start site region 20390
Tssr20391 2 136058245 to 136058263 18 + TSS region transcription start site region 20391
Tssr20392 2 136058270 to 136058293 23 + TSS region transcription start site region 20392
Cpgi12323 2 136059254 to 136059681 427 CpG island CpG island 12323
Tssr20393 2 136059775 to 136059804 29 + TSS region transcription start site region 20393
Tssr20394 2 136060784 to 136060796 12 + TSS region transcription start site region 20394
Pak7 2 136081104 to 136387967 306863 - protein coding gene p21 (RAC1) activated kinase 7
2900018K06Rik 2 136120254 to 136120720 466 unclassified gene RIKEN cDNA 2900018K06 gene
Gm14218 2 136137006 to 136140161 3155 + antisense lncRNA gene predicted gene 14218
Gm39942 2 136179602 to 136183686 4084 + lncRNA gene predicted gene, 39942
D2Mit136 2 136353842 to 136353991 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 136
Cpgi12324 2 136387214 to 136387779 565 CpG island CpG island 12324
Tssr26515 2 136387691 to 136387698 7 - TSS region transcription start site region 26515
Tssr26516 2 136387740 to 136387798 58 - TSS region transcription start site region 26516
Tssr26517 2 136387804 to 136387820 16 - TSS region transcription start site region 26517
Tssr26518 2 136387929 to 136387985 56 - TSS region transcription start site region 26518
Tssr26519 2 136387994 to 136388005 11 - TSS region transcription start site region 26519
Gm14056 2 136399062 to 136399703 641 + pseudogene predicted gene 14056
Gm14054 2 136402719 to 136403422 703 - pseudogene predicted gene 14054
Gm32546 2 136445260 to 136486403 41143 - lncRNA gene predicted gene, 32546
Tssr20395 2 136501904 to 136501917 13 + TSS region transcription start site region 20395
Tssr20396 2 136501951 to 136501959 8 + TSS region transcription start site region 20396
Tssr20397 2 136501966 to 136501977 11 + TSS region transcription start site region 20397
Tssr20398 2 136501978 to 136501997 19 + TSS region transcription start site region 20398
Tssr668 2 136502036 to 136502039 3 + TSS region transcription start site region 668
Tssr20399 2 136502046 to 136502047 1 + TSS region transcription start site region 20399
Tssr20400 2 136502050 to 136502061 11 + TSS region transcription start site region 20400
Tssr20401 2 136502243 to 136502260 17 + TSS region transcription start site region 20401
Gm32746 2 136508158 to 136512187 4029 - lncRNA gene predicted gene, 32746
Tssr26520 2 136512015 to 136512062 47 - TSS region transcription start site region 26520
Cpgi12325 2 136532036 to 136532433 397 CpG island CpG island 12325
Tssr20402 2 136532180 to 136532215 35 + TSS region transcription start site region 20402
Tssr20403 2 136532243 to 136532259 16 + TSS region transcription start site region 20403
Tssr20404 2 136532266 to 136532287 21 + TSS region transcription start site region 20404
Ankef1 2 136532321 to 136555854 23533 + protein coding gene ankyrin repeat and EF-hand domain containing 1
Gm32659 2 136533833 to 136714163 180330 - lncRNA gene predicted gene, 32659
Cpgi12326 2 136549764 to 136550049 285 CpG island CpG island 12326
Tssr669 2 136552912 to 136552920 8 + TSS region transcription start site region 669
Cpgi12327 2 136678590 to 136679118 528 CpG island CpG island 12327
Gm36967 2 136679961 to 136680226 265 + unclassified gene predicted gene, 36967
Cpgi12328 2 136712002 to 136712385 383 CpG island CpG island 12328
Tssr20405 2 136713295 to 136713313 18 + TSS region transcription start site region 20405
Tssr20406 2 136713444 to 136713492 48 + TSS region transcription start site region 20406
Snap25 2 136713453 to 136782428 68975 + protein coding gene synaptosomal-associated protein 25
Tssr20407 2 136713507 to 136713528 21 + TSS region transcription start site region 20407
Tssr20408 2 136713540 to 136713556 16 + TSS region transcription start site region 20408
Cpgi12329 2 136714075 to 136714433 358 CpG island CpG island 12329
Tssr20409 2 136723774 to 136723778 4 + TSS region transcription start site region 20409
Gm14053 2 136744146 to 136744615 469 - pseudogene predicted gene 14053
Tssr20410 2 136756071 to 136756142 71 + TSS region transcription start site region 20410
Tssr20411 2 136758304 to 136758330 26 + TSS region transcription start site region 20411
Tssr20412 2 136764036 to 136764055 19 + TSS region transcription start site region 20412
Tssr20413 2 136765389 to 136765402 13 + TSS region transcription start site region 20413
Tssr20414 2 136770127 to 136770142 15 + TSS region transcription start site region 20414
Tssr20415 2 136770146 to 136770152 6 + TSS region transcription start site region 20415
Tssr20416 2 136772979 to 136772982 3 + TSS region transcription start site region 20416
Tssr20417 2 136773924 to 136773961 37 + TSS region transcription start site region 20417
Tssr20418 2 136773973 to 136773999 26 + TSS region transcription start site region 20418
Tssr20419 2 136777330 to 136777341 11 + TSS region transcription start site region 20419
Tssr20420 2 136777377 to 136777448 71 + TSS region transcription start site region 20420
Tssr20421 2 136781071 to 136781081 10 + TSS region transcription start site region 20421
Tssr20422 2 136781127 to 136781164 37 + TSS region transcription start site region 20422
Tssr20423 2 136781172 to 136781224 52 + TSS region transcription start site region 20423
Tssr26521 2 136781228 to 136781274 46 - TSS region transcription start site region 26521
Tssr20424 2 136781286 to 136781293 7 + TSS region transcription start site region 20424
Tssr20425 2 136781361 to 136781370 9 + TSS region transcription start site region 20425
Tssr20426 2 136781398 to 136781420 22 + TSS region transcription start site region 20426
Tssr20427 2 136781457 to 136781472 15 + TSS region transcription start site region 20427
Tssr20428 2 136781589 to 136781607 18 + TSS region transcription start site region 20428
Tssr20429 2 136781761 to 136781770 9 + TSS region transcription start site region 20429
Tssr20430 2 136781822 to 136781827 5 + TSS region transcription start site region 20430
Tssr20431 2 136781837 to 136781842 5 + TSS region transcription start site region 20431
Tssr20432 2 136781881 to 136781888 7 + TSS region transcription start site region 20432
Tssr20433 2 136781935 to 136781942 7 + TSS region transcription start site region 20433
Gm39943 2 136793417 to 136805072 11655 - lncRNA gene predicted gene, 39943
Gm46767 2 136805208 to 136828496 23288 - lncRNA gene predicted gene, 46767
Tssr20434 2 136809344 to 136809350 6 + TSS region transcription start site region 20434
Mkks 2 136873780 to 136891389 17609 - protein coding gene McKusick-Kaufman syndrome
Cpgi12330 2 136890863 to 136891685 822 CpG island CpG island 12330
Tssr26522 2 136891115 to 136891122 7 - TSS region transcription start site region 26522
Tssr26523 2 136891131 to 136891186 55 - TSS region transcription start site region 26523
Slx4ip 2 136891218 to 137071950 180732 + protein coding gene SLX4 interacting protein
Tssr26524 2 136891363 to 136891413 50 - TSS region transcription start site region 26524
Tssr20435 2 136891563 to 136891599 36 + TSS region transcription start site region 20435
Tssr20436 2 136891601 to 136891615 14 + TSS region transcription start site region 20436
Cpgi12331 2 136892026 to 136892438 412 CpG island CpG island 12331
Tssr20437 2 136892208 to 136892241 33 + TSS region transcription start site region 20437
Tssr20438 2 136892249 to 136892272 23 + TSS region transcription start site region 20438
Tssr20439 2 136892280 to 136892294 14 + TSS region transcription start site region 20439
Tssr20440 2 136910151 to 136910171 20 + TSS region transcription start site region 20440
Tssr20441 2 136910177 to 136910188 11 + TSS region transcription start site region 20441
Tssr20442 2 136910625 to 136910638 13 + TSS region transcription start site region 20442
Tssr20443 2 136911009 to 136911029 20 + TSS region transcription start site region 20443
Tssr20444 2 136911231 to 136911243 12 + TSS region transcription start site region 20444
Tssr20445 2 136911392 to 136911403 11 + TSS region transcription start site region 20445
Tssr20446 2 136915361 to 136915381 20 + TSS region transcription start site region 20446
Tssr20447 2 136922291 to 136922298 7 + TSS region transcription start site region 20447
Tssr20448 2 136935027 to 136935030 3 + TSS region transcription start site region 20448
Tssr20449 2 136944043 to 136944047 4 + TSS region transcription start site region 20449
Gm38479 2 136944077 to 136947476 3399 + lncRNA gene predicted gene, 38479
D2Dcr81 2 136961903 to 136962017 114 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 81
Vclq1 2 137000000 to 62000000 -75000000 QTL curvilinear velocity QTL 1
Tssr20450 2 137028101 to 137028112 11 + TSS region transcription start site region 20450
Jag1 2 137081451 to 137116520 35069 - protein coding gene jagged 1
Tssr26525 2 137082008 to 137082022 14 - TSS region transcription start site region 26525
Tssr26526 2 137082148 to 137082153 5 - TSS region transcription start site region 26526
Tssr26527 2 137093450 to 137093461 11 - TSS region transcription start site region 26527
Tssr26528 2 137095568 to 137095572 4 - TSS region transcription start site region 26528
Tssr670 2 137095738 to 137095776 38 - TSS region transcription start site region 670
Cpgi12332 2 137114239 to 137117735 3496 CpG island CpG island 12332
Tssr26529 2 137116333 to 137116350 17 - TSS region transcription start site region 26529
Tssr26530 2 137116395 to 137116406 11 - TSS region transcription start site region 26530
Tssr26531 2 137116442 to 137116451 9 - TSS region transcription start site region 26531
Tssr26532 2 137116624 to 137116628 4 - TSS region transcription start site region 26532
Tssr26533 2 137116721 to 137116735 14 - TSS region transcription start site region 26533
Tssr26534 2 137116755 to 137116773 18 - TSS region transcription start site region 26534
Tssr20451 2 137194354 to 137194357 3 + TSS region transcription start site region 20451
Gm28214 2 137198983 to 137199732 749 + lincRNA gene predicted gene 28214
Gm39944 2 137263996 to 137279539 15543 + lncRNA gene predicted gene, 39944
Gm14055 2 137288503 to 137329126 40623 + lincRNA gene predicted gene 14055
Tssr671 2 137528351 to 137528352 1 + TSS region transcription start site region 671
Tssr20452 2 137663424 to 137663436 12 + TSS region transcription start site region 20452
Gm14064 2 137663425 to 137722403 58978 + lincRNA gene predicted gene 14064
Tssr20453 2 137676209 to 137676210 1 + TSS region transcription start site region 20453
Tssr20454 2 137855850 to 137855856 6 + TSS region transcription start site region 20454
Gm14062 2 137871335 to 137876831 5496 - lincRNA gene predicted gene 14062
Tssr26535 2 138081524 to 138081526 2 - TSS region transcription start site region 26535
D2Mit108 2 138084327 to 138084516 189 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 108
Tssr26536 2 138112198 to 138112201 3 - TSS region transcription start site region 26536
D2Dcr82 2 138247548 to 138247648 100 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 82
Cpgi12333 2 138256467 to 138257349 882 CpG island CpG island 12333
Tssr20455 2 138256530 to 138256615 85 + TSS region transcription start site region 20455
Btbd3 2 138256565 to 138589292 332727 + protein coding gene BTB (POZ) domain containing 3
Tssr20456 2 138256617 to 138256677 60 + TSS region transcription start site region 20456
Tssr20457 2 138278396 to 138278407 11 + TSS region transcription start site region 20457
Tssr20458 2 138278469 to 138278480 11 + TSS region transcription start site region 20458
Tssr20459 2 138278481 to 138278531 50 + TSS region transcription start site region 20459
Tssr672 2 138279049 to 138279061 12 + TSS region transcription start site region 672
Cpgi12334 2 138280311 to 138280485 174 CpG island CpG island 12334
D2Mit353 2 138299435 to 138299634 199 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 353
Tssr20460 2 138365622 to 138365631 9 + TSS region transcription start site region 20460
Gm40022 2 138517959 to 138523711 5752 + pseudogene predicted gene, 40022
Gm14061 2 138589392 to 138649122 59730 + lincRNA gene predicted gene 14061
D2Mit209 2 138700655 to 138700775 120 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 209
D2Mit209.2 2 138700750 to 138700863 113 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 209.2
Tssr20461 2 138714629 to 138714640 11 + TSS region transcription start site region 20461
Mir1952 2 138819929 to 138820007 78 + miRNA gene microRNA 1952
Gm14065 2 138872023 to 138872607 584 + pseudogene predicted gene 14065
D2Mit490 2 138895496 to 138895600 104 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 490
Nktcn2 2 138895496 to 146052033 7156537 QTL natural killer T cell numbers 2
Gm14067 2 138916619 to 138916932 313 - pseudogene predicted gene 14067
Gm14069 2 139175897 to 139176125 228 - pseudogene predicted gene 14069
Gm14066 2 139256344 to 139306924 50580 - unclassified non-coding RNA gene predicted gene 14066
Gm14071 2 139383832 to 139384340 508 - pseudogene predicted gene 14071
D2Mit339 2 139444611 to 139444750 139 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 339
Sptlc3 2 139493913 to 139637674 143761 + protein coding gene serine palmitoyltransferase, long chain base subunit 3
Tssr20462 2 139493914 to 139493923 9 + TSS region transcription start site region 20462
Tssr20463 2 139493932 to 139493937 5 + TSS region transcription start site region 20463
Tssr20464 2 139493954 to 139493972 18 + TSS region transcription start site region 20464
Tssr20465 2 139493976 to 139494015 39 + TSS region transcription start site region 20465
Tssr20466 2 139494038 to 139494050 12 + TSS region transcription start site region 20466
Tssr20467 2 139494053 to 139494063 10 + TSS region transcription start site region 20467
Tssr20468 2 139494118 to 139494175 57 + TSS region transcription start site region 20468
Tssr20469 2 139494192 to 139494197 5 + TSS region transcription start site region 20469
Tssr20470 2 139546017 to 139546020 3 + TSS region transcription start site region 20470
Tssr20471 2 139579468 to 139579478 10 + TSS region transcription start site region 20471