Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:132849155-136439166

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170 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
T2dm3 2 114457594 to 132872237 18414643 QTL type 2 diabetes mellitus 3
Tbvq1 2 126200000 to 135600000 9400000 QTL trabecular bone volume QTL 1
Gnf4 2 128331784 to 132872237 4540453 QTL growth and fatness 4
Crls1 2 132846666 to 132866785 20119 + protein coding gene cardiolipin synthase 1
Lrrn4 2 132868305 to 132880891 12586 - protein coding gene leucine rich repeat neuronal 4
Tssr20344 2 132870017 to 132870021 4 + TSS region transcription start site region 20344
D2Mit106 2 132872088 to 132872237 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 106
Cpgi12312 2 132878940 to 132880103 1163 CpG island CpG island 12312
Tssr26491 2 132880847 to 132880907 60 - TSS region transcription start site region 26491
Fermt1 2 132904389 to 132945906 41517 - protein coding gene fermitin family member 1
Tssr26492 2 132923475 to 132923480 5 - TSS region transcription start site region 26492
D2Dcr76 2 132928683 to 132928813 130 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 76
Cpgi12313 2 132939258 to 132939421 163 CpG island CpG island 12313
D2Mit508 2 132941638 to 132941886 248 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-508
Cpgi12314 2 132944961 to 132945740 779 CpG island CpG island 12314
Tssr26493 2 132945469 to 132945570 101 - TSS region transcription start site region 26493
Tssr26494 2 132945593 to 132945639 46 - TSS region transcription start site region 26494
Tssr26495 2 132945677 to 132945688 11 - TSS region transcription start site region 26495
Tssr26496 2 132945735 to 132945751 16 - TSS region transcription start site region 26496
Tssr26497 2 132945760 to 132945772 12 - TSS region transcription start site region 26497
Tssr26498 2 132945875 to 132945884 9 - TSS region transcription start site region 26498
Tssr26499 2 132945924 to 132945934 10 - TSS region transcription start site region 26499
Tssr26500 2 132946028 to 132946042 14 - TSS region transcription start site region 26500
Tssr26501 2 132946052 to 132946066 14 - TSS region transcription start site region 26501
Tssr26502 2 132946083 to 132946094 11 - TSS region transcription start site region 26502
2900022B07Rik 2 132951302 to 132952551 1249 unclassified gene RIKEN cDNA 2900022B07 gene
Gm14102 2 132958442 to 132959805 1363 + lincRNA gene predicted gene 14102
Gm14101 2 132980169 to 132981168 999 - pseudogene predicted gene 14101
Gm25704 2 133008487 to 133008654 167 + snRNA gene predicted gene, 25704
Gm14103 2 133047187 to 133047552 365 - pseudogene predicted gene 14103
Tssr20345 2 133199573 to 133199574 1 + TSS region transcription start site region 20345
Gm14094 2 133199611 to 133200214 603 + pseudogene predicted gene 14094
Cpgi12315 2 133233825 to 133234216 391 CpG island CpG island 12315
D2Mit107 2 133235703 to 133235821 118 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 107
Prdt1 2 133235703 to 133235821 118 QTL prion disease incubation time 1
D2Dcr77 2 133235704 to 133235809 105 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 77
D2Mit488 2 133279206 to 133279310 104 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 488
Gm27449 2 133330924 to 133330982 58 + snRNA gene predicted gene, 27449
Gm31851 2 133425698 to 133429858 4160 - lncRNA gene predicted gene, 31851
A430048G15Rik 2 133432097 to 133451975 19878 + lincRNA gene RIKEN cDNA A430048G15 gene
D2Mit70 2 133454576 to 133454765 189 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 70
Gm14100 2 133463118 to 133465784 2666 + lincRNA gene predicted gene 14100
D2Mit192 2 133464410 to 133464554 144 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 192
Ses7 2 133464410 to 133464554 144 QTL salmonella enteritidis susceptibility 7
Tssr20346 2 133497894 to 133497895 1 + TSS region transcription start site region 20346
Cpgi12316 2 133551854 to 133553554 1700 CpG island CpG island 12316
Bmp2 2 133552159 to 133562885 10726 + protein coding gene bone morphogenetic protein 2
Tssr20347 2 133552218 to 133552237 19 + TSS region transcription start site region 20347
Tssr20348 2 133552275 to 133552278 3 + TSS region transcription start site region 20348
Tssr20349 2 133553004 to 133553017 13 + TSS region transcription start site region 20349
Cpgi12317 2 133554248 to 133554977 729 CpG island CpG island 12317
D2Mit279 2 133560540 to 133560690 150 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 279
Mir3090 2 133564708 to 133564794 86 + miRNA gene microRNA 3090
Gm25258 2 133584315 to 133584421 106 - snRNA gene predicted gene, 25258
Gm39940 2 133743168 to 133790007 46839 + lncRNA gene predicted gene, 39940
Tssr20350 2 133856948 to 133856952 4 + TSS region transcription start site region 20350
D2Mit46.2 2 134028992 to 134029143 151 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 46.2
D2Mit46 2 134029150 to 134029264 114 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 46
D2Mit19.1 2 134030232 to 134030459 227 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 19.1
D2Mit19 2 134030427 to 134030529 102 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 19
D2Mit19.2 2 134030497 to 134030632 135 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 19.2
D2Mit193 2 134082023 to 134082217 194 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 193
Cpgi12318 2 134137598 to 134137823 225 CpG island CpG island 12318
Tssr26503 2 134488756 to 134488758 2 - TSS region transcription start site region 26503
Hao1 2 134497361 to 134554352 56991 - protein coding gene hydroxyacid oxidase 1, liver
D2Mit165 2 134527073 to 134527215 142 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 165
D2Mit448 2 134540056 to 134540162 106 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 448
D2Dcr78 2 134540059 to 134540151 92 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 78
Tssr164680 2 134546354 to 134546355 1 - TSS region transcription start site region 164680
Tssr26504 2 134554348 to 134554369 21 - TSS region transcription start site region 26504
Tmx4 2 134594501 to 134644121 49620 - protein coding gene thioredoxin-related transmembrane protein 4
Tssr26505 2 134596652 to 134596671 19 - TSS region transcription start site region 26505
Tssr26506 2 134634468 to 134634472 4 - TSS region transcription start site region 26506
Cpgi12319 2 134643555 to 134644360 805 CpG island CpG island 12319
Tssr26507 2 134644019 to 134644042 23 - TSS region transcription start site region 26507
Tssr26508 2 134644051 to 134644058 7 - TSS region transcription start site region 26508
Tssr26509 2 134644079 to 134644109 30 - TSS region transcription start site region 26509
Tssr26510 2 134644125 to 134644143 18 - TSS region transcription start site region 26510
Tssr26511 2 134644155 to 134644166 11 - TSS region transcription start site region 26511
Tssr26512 2 134644177 to 134644188 11 - TSS region transcription start site region 26512
Gm14037 2 134730795 to 134731107 312 - pseudogene predicted gene 14037
Gm14038 2 134762824 to 134763630 806 - pseudogene predicted gene 14038
Cpgi12320 2 134785898 to 134786877 979 CpG island CpG island 12320
Tssr20351 2 134786154 to 134786170 16 + TSS region transcription start site region 20351
Plcb1 2 134786164 to 135475258 689094 + protein coding gene phospholipase C, beta 1
Tssr20352 2 134786175 to 134786196 21 + TSS region transcription start site region 20352
Tssr20353 2 134786198 to 134786218 20 + TSS region transcription start site region 20353
Gm14036 2 134803949 to 134804428 479 + pseudogene predicted gene 14036
Tssr20354 2 134845529 to 134845540 11 + TSS region transcription start site region 20354
Tssr664 2 134845567 to 134845574 7 + TSS region transcription start site region 664
Tssr20355 2 134855284 to 134855304 20 + TSS region transcription start site region 20355
Tssr20356 2 134862963 to 134862965 2 + TSS region transcription start site region 20356
Gm39941 2 134925794 to 134932369 6575 + lncRNA gene predicted gene, 39941
D2Dcr79 2 134949670 to 134949788 118 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 79
D2Mit223 2 134987411 to 134987508 97 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 223
Tssr20357 2 134991567 to 134991570 3 + TSS region transcription start site region 20357
Tssr20358 2 134992012 to 134992040 28 + TSS region transcription start site region 20358
D2Mit191 2 135005372 to 135005478 106 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 191
Tssr20359 2 135022249 to 135022254 5 + TSS region transcription start site region 20359
Tssr20360 2 135061320 to 135061335 15 + TSS region transcription start site region 20360
Tssr20361 2 135146731 to 135146735 4 + TSS region transcription start site region 20361
4930545L23Rik 2 135169573 to 135215616 46043 - antisense lncRNA gene RIKEN cDNA 4930545L23 gene
Tssr20362 2 135193444 to 135193447 3 + TSS region transcription start site region 20362
Tssr26513 2 135215610 to 135215622 12 - TSS region transcription start site region 26513
Tssr20363 2 135262423 to 135262427 4 + TSS region transcription start site region 20363
D2Mit208 2 135280668 to 135280855 187 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 208
D2Dcr80 2 135280685 to 135280788 103 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 80
Tssr665 2 135309184 to 135309187 3 + TSS region transcription start site region 665
Tssr20364 2 135312392 to 135312394 2 + TSS region transcription start site region 20364
Tssr20365 2 135336375 to 135336379 4 + TSS region transcription start site region 20365
Tssr20366 2 135364771 to 135364784 13 + TSS region transcription start site region 20366
D2Mit400 2 135413882 to 135413981 99 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 400
Tssr20367 2 135473793 to 135473802 9 + TSS region transcription start site region 20367
Gm31993 2 135541387 to 135550209 8822 + lncRNA gene predicted gene, 31993
9630028H03Rik 2 135580530 to 135583220 2690 - antisense lncRNA gene RIKEN cDNA 9630028H03 gene
Tssr26514 2 135583289 to 135583314 25 - TSS region transcription start site region 26514
Rvfs1 2 135590624 to 173607823 38017199 QTL Rift Valley fever susceptibility 1
D2Mit306 2 135590624 to 135590730 106 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 306
Tssr20368 2 135646517 to 135646529 12 + TSS region transcription start site region 20368
Platr3 2 135648907 to 135652063 3156 + lincRNA gene pluripotency associated transcript 3
Cpgi12321 2 135658505 to 135660122 1617 CpG island CpG island 12321
Plcb4 2 135659011 to 136014593 355582 + protein coding gene phospholipase C, beta 4
Tssr20369 2 135659159 to 135659174 15 + TSS region transcription start site region 20369
Tssr20370 2 135659293 to 135659357 64 + TSS region transcription start site region 20370
Tssr20371 2 135659540 to 135659591 51 + TSS region transcription start site region 20371
Tssr20372 2 135659593 to 135659604 11 + TSS region transcription start site region 20372
Tssr20373 2 135659625 to 135659650 25 + TSS region transcription start site region 20373
Tssr20374 2 135659685 to 135659713 28 + TSS region transcription start site region 20374
Gm14209 2 135669453 to 135670425 972 + sense intronic lncRNA gene predicted gene 14209
Tssr20375 2 135674247 to 135674275 28 + TSS region transcription start site region 20375
Gm14211 2 135686174 to 135693154 6980 - lincRNA gene predicted gene 14211
Tssr20376 2 135764880 to 135764908 28 + TSS region transcription start site region 20376
Tssr20377 2 135764910 to 135764935 25 + TSS region transcription start site region 20377
Tssr20378 2 135764958 to 135764973 15 + TSS region transcription start site region 20378
Gm14210 2 135811945 to 135812927 982 - lincRNA gene predicted gene 14210
Tssr20379 2 135929503 to 135929512 9 + TSS region transcription start site region 20379
Tssr20380 2 135987604 to 135987606 2 + TSS region transcription start site region 20380
Tssr20381 2 136007342 to 136007356 14 + TSS region transcription start site region 20381
Tssr666 2 136012008 to 136012014 6 + TSS region transcription start site region 666
Gm26227 2 136026151 to 136026251 100 - snRNA gene predicted gene, 26227
Tssr20382 2 136052180 to 136052199 19 + TSS region transcription start site region 20382
Lamp5 2 136052239 to 136069917 17678 + protein coding gene lysosomal-associated membrane protein family, member 5
Tssr20383 2 136057711 to 136057723 12 + TSS region transcription start site region 20383
Tssr20384 2 136057886 to 136057895 9 + TSS region transcription start site region 20384
Tssr20385 2 136057955 to 136057981 26 + TSS region transcription start site region 20385
Tssr20386 2 136058080 to 136058102 22 + TSS region transcription start site region 20386
Cpgi12322 2 136058095 to 136058388 293 CpG island CpG island 12322
Tssr667 2 136058104 to 136058107 3 + TSS region transcription start site region 667
Tssr20387 2 136058138 to 136058149 11 + TSS region transcription start site region 20387
Tssr20388 2 136058167 to 136058176 9 + TSS region transcription start site region 20388
Tssr20389 2 136058207 to 136058212 5 + TSS region transcription start site region 20389
Tssr20390 2 136058224 to 136058237 13 + TSS region transcription start site region 20390
Tssr20391 2 136058245 to 136058263 18 + TSS region transcription start site region 20391
Tssr20392 2 136058270 to 136058293 23 + TSS region transcription start site region 20392
Cpgi12323 2 136059254 to 136059681 427 CpG island CpG island 12323
Tssr20393 2 136059775 to 136059804 29 + TSS region transcription start site region 20393
Tssr20394 2 136060784 to 136060796 12 + TSS region transcription start site region 20394
Pak7 2 136081104 to 136387967 306863 - protein coding gene p21 (RAC1) activated kinase 7
2900018K06Rik 2 136120254 to 136120720 466 unclassified gene RIKEN cDNA 2900018K06 gene
Gm14218 2 136137006 to 136140161 3155 + antisense lncRNA gene predicted gene 14218
Gm39942 2 136179602 to 136183686 4084 + lncRNA gene predicted gene, 39942
D2Mit136 2 136353842 to 136353991 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 136
Cpgi12324 2 136387214 to 136387779 565 CpG island CpG island 12324
Tssr26515 2 136387691 to 136387698 7 - TSS region transcription start site region 26515
Tssr26516 2 136387740 to 136387798 58 - TSS region transcription start site region 26516
Tssr26517 2 136387804 to 136387820 16 - TSS region transcription start site region 26517
Tssr26518 2 136387929 to 136387985 56 - TSS region transcription start site region 26518
Tssr26519 2 136387994 to 136388005 11 - TSS region transcription start site region 26519
Gm14056 2 136399062 to 136399703 641 + pseudogene predicted gene 14056
Gm14054 2 136402719 to 136403422 703 - pseudogene predicted gene 14054