Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:130443981-130563986

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25 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vps16 2 130424339 to 130444269 19930 + protein coding gene VSP16 CORVET/HOPS core subunit
D2Mit78 2 130449734 to 130449948 214 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 78
Cpgi12265 2 130449893 to 130450944 1051 CpG island CpG island 12265
Ptpra 2 130450251 to 130554300 104049 + protein coding gene protein tyrosine phosphatase, receptor type, A
Tssr20211 2 130450259 to 130450309 50 + TSS region transcription start site region 20211
Tssr20212 2 130450310 to 130450326 16 + TSS region transcription start site region 20212
Tssr20213 2 130450329 to 130450349 20 + TSS region transcription start site region 20213
Tssr20214 2 130450379 to 130450384 5 + TSS region transcription start site region 20214
Tssr20215 2 130479701 to 130479711 10 + TSS region transcription start site region 20215
Tssr20216 2 130482382 to 130482398 16 + TSS region transcription start site region 20216
Tssr26299 2 130488737 to 130488744 7 - TSS region transcription start site region 26299
Tssr20217 2 130490557 to 130490561 4 + TSS region transcription start site region 20217
Tssr20218 2 130503981 to 130503986 5 + TSS region transcription start site region 20218
Tssr20219 2 130504280 to 130504308 28 + TSS region transcription start site region 20219
9530056E24Rik 2 130523995 to 130527284 3289 + unclassified gene RIKEN cDNA 9530056E24 gene
Gm23876 2 130531678 to 130531744 66 - miRNA gene predicted gene, 23876
Tssr20220 2 130539410 to 130539424 14 + TSS region transcription start site region 20220
Tssr20221 2 130539429 to 130539438 9 + TSS region transcription start site region 20221
Tssr20222 2 130539526 to 130539534 8 + TSS region transcription start site region 20222
Tssr20223 2 130541295 to 130541323 28 + TSS region transcription start site region 20223
4930473A02Rik 2 130543791 to 130563749 19958 - antisense lncRNA gene RIKEN cDNA 4930473A02 gene
Cpgi12266 2 130563477 to 130564450 973 CpG island CpG island 12266
Tssr26300 2 130563717 to 130563726 9 - TSS region transcription start site region 26300
Tssr20224 2 130563732 to 130563798 66 + TSS region transcription start site region 20224
Mrps26 2 130563757 to 130565394 1637 + protein coding gene mitochondrial ribosomal protein S26