Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:129383568-130514207

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191 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr26265 2 129410386 to 129410399 13 - TSS region transcription start site region 26265
Tssr26266 2 129410455 to 129410465 10 - TSS region transcription start site region 26266
F830045P16Rik 2 129458359 to 129536602 78243 - protein coding gene RIKEN cDNA F830045P16 gene
Tssr26267 2 129478123 to 129478155 32 - TSS region transcription start site region 26267
Tssr20125 2 129490158 to 129490186 28 + TSS region transcription start site region 20125
Gm14040 2 129493570 to 129515807 22237 - sense intronic lncRNA gene predicted gene 14040
Tssr26268 2 129515083 to 129515134 51 - TSS region transcription start site region 26268
Gm14041 2 129565047 to 129566068 1021 - antisense lncRNA gene predicted gene 14041
Cpgi12250 2 129574701 to 129574890 189 CpG island CpG island 12250
Tssr26269 2 129581727 to 129581732 5 - TSS region transcription start site region 26269
Tssr20126 2 129588255 to 129588292 37 + TSS region transcription start site region 20126
Cpgi12251 2 129592508 to 129594261 1753 CpG island CpG island 12251
Tssr26270 2 129592601 to 129592605 4 - TSS region transcription start site region 26270
Tssr20127 2 129592670 to 129592681 11 + TSS region transcription start site region 20127
Tssr20128 2 129592792 to 129592803 11 + TSS region transcription start site region 20128
Tssr20129 2 129592818 to 129592885 67 + TSS region transcription start site region 20129
Sirpa 2 129592835 to 129632228 39393 + protein coding gene signal-regulatory protein alpha
Tssr20130 2 129592922 to 129592940 18 + TSS region transcription start site region 20130
Tssr20131 2 129592966 to 129592986 20 + TSS region transcription start site region 20131
Tssr20132 2 129593003 to 129593031 28 + TSS region transcription start site region 20132
Tssr20133 2 129593032 to 129593046 14 + TSS region transcription start site region 20133
Tssr20134 2 129593049 to 129593058 9 + TSS region transcription start site region 20134
Tssr20135 2 129593095 to 129593127 32 + TSS region transcription start site region 20135
Tssr20136 2 129593136 to 129593147 11 + TSS region transcription start site region 20136
Tssr20137 2 129593205 to 129593221 16 + TSS region transcription start site region 20137
Tssr20138 2 129593234 to 129593258 24 + TSS region transcription start site region 20138
Tssr20139 2 129593360 to 129593377 17 + TSS region transcription start site region 20139
Tssr20140 2 129593382 to 129593414 32 + TSS region transcription start site region 20140
Tssr20141 2 129593422 to 129593436 14 + TSS region transcription start site region 20141
Tssr20142 2 129593528 to 129593600 72 + TSS region transcription start site region 20142
Tssr26271 2 129593941 to 129593948 7 - TSS region transcription start site region 26271
Tssr26272 2 129595662 to 129595725 63 - TSS region transcription start site region 26272
Tssr20143 2 129596187 to 129596238 51 + TSS region transcription start site region 20143
2900076A13Rik 2 129596354 to 129597218 864 unclassified gene RIKEN cDNA 2900076A13 gene
Tssr20144 2 129601514 to 129601542 28 + TSS region transcription start site region 20144
Tssr20145 2 129602201 to 129602217 16 + TSS region transcription start site region 20145
Tssr20146 2 129603730 to 129603744 14 + TSS region transcription start site region 20146
Tssr20147 2 129608960 to 129608972 12 + TSS region transcription start site region 20147
Tssr20148 2 129609001 to 129609055 54 + TSS region transcription start site region 20148
Tssr20149 2 129615482 to 129615495 13 + TSS region transcription start site region 20149
Tssr20150 2 129615531 to 129615548 17 + TSS region transcription start site region 20150
Tssr20151 2 129615568 to 129615581 13 + TSS region transcription start site region 20151
Tssr20152 2 129615693 to 129615700 7 + TSS region transcription start site region 20152
Tssr20153 2 129616222 to 129616261 39 + TSS region transcription start site region 20153
Tssr20154 2 129616285 to 129616309 24 + TSS region transcription start site region 20154
Tssr20155 2 129616386 to 129616408 22 + TSS region transcription start site region 20155
Tssr20156 2 129616437 to 129616451 14 + TSS region transcription start site region 20156
Tssr20157 2 129616507 to 129616520 13 + TSS region transcription start site region 20157
Tssr20158 2 129616554 to 129616570 16 + TSS region transcription start site region 20158
Tssr20159 2 129616617 to 129616621 4 + TSS region transcription start site region 20159
Tssr20160 2 129618454 to 129618467 13 + TSS region transcription start site region 20160
Tssr20161 2 129618496 to 129618538 42 + TSS region transcription start site region 20161
Tssr20162 2 129629981 to 129629993 12 + TSS region transcription start site region 20162
Tssr26273 2 129629982 to 129630002 20 - TSS region transcription start site region 26273
Tssr20163 2 129630001 to 129630023 22 + TSS region transcription start site region 20163
Tssr26274 2 129630042 to 129630074 32 - TSS region transcription start site region 26274
Tssr20164 2 129630062 to 129630077 15 + TSS region transcription start site region 20164
Tssr20165 2 129630092 to 129630100 8 + TSS region transcription start site region 20165
Tssr20166 2 129630111 to 129630134 23 + TSS region transcription start site region 20166
Tssr20167 2 129630185 to 129630199 14 + TSS region transcription start site region 20167
Tssr20168 2 129630311 to 129630333 22 + TSS region transcription start site region 20168
Tssr20169 2 129630407 to 129630427 20 + TSS region transcription start site region 20169
Tssr20170 2 129630575 to 129630586 11 + TSS region transcription start site region 20170
Tssr20171 2 129630587 to 129630600 13 + TSS region transcription start site region 20171
Tssr26275 2 129630622 to 129630651 29 - TSS region transcription start site region 26275
Tssr20172 2 129630655 to 129630668 13 + TSS region transcription start site region 20172
Tssr20173 2 129630687 to 129630716 29 + TSS region transcription start site region 20173
Tssr20174 2 129630732 to 129630914 182 + TSS region transcription start site region 20174
Tssr20175 2 129630918 to 129630929 11 + TSS region transcription start site region 20175
Tssr20176 2 129630936 to 129630961 25 + TSS region transcription start site region 20176
Tssr20177 2 129631268 to 129631279 11 + TSS region transcription start site region 20177
Tssr20178 2 129631498 to 129631512 14 + TSS region transcription start site region 20178
Tssr20179 2 129636198 to 129636212 14 + TSS region transcription start site region 20179
Pdyn 2 129686565 to 129699844 13279 - protein coding gene prodynorphin
Cpgi12252 2 129688041 to 129688347 306 CpG island CpG island 12252
Tssr26276 2 129699805 to 129699818 13 - TSS region transcription start site region 26276
Tssr26277 2 129699836 to 129699850 14 - TSS region transcription start site region 26277
Gm14046 2 129749901 to 129750409 508 + pseudogene predicted gene 14046
Stk35os1 2 129798369 to 129801459 3090 - lncRNA gene serine/threonine kinase 35, opposite strand 1
Cpgi12253 2 129800164 to 129802089 1925 CpG island CpG island 12253
Tssr20180 2 129800284 to 129800293 9 + TSS region transcription start site region 20180
Tssr20181 2 129800295 to 129800319 24 + TSS region transcription start site region 20181
Tssr20182 2 129800451 to 129800526 75 + TSS region transcription start site region 20182
Stk35 2 129800517 to 129832287 31770 + protein coding gene serine/threonine kinase 35
Tssr20183 2 129800582 to 129800641 59 + TSS region transcription start site region 20183
Tssr20184 2 129800668 to 129800698 30 + TSS region transcription start site region 20184
Tssr20185 2 129800711 to 129800728 17 + TSS region transcription start site region 20185
Tssr20186 2 129800731 to 129800740 9 + TSS region transcription start site region 20186
Tssr20187 2 129800742 to 129800765 23 + TSS region transcription start site region 20187
Tssr20188 2 129801392 to 129801396 4 + TSS region transcription start site region 20188
Tssr26278 2 129801440 to 129801464 24 - TSS region transcription start site region 26278
Tssr26279 2 129801478 to 129801495 17 - TSS region transcription start site region 26279
Tssr20189 2 129801566 to 129801605 39 + TSS region transcription start site region 20189
Tssr20190 2 129832069 to 129832075 6 + TSS region transcription start site region 20190
Gm39933 2 129882483 to 129897531 15048 - lncRNA gene predicted gene, 39933
Tssr26280 2 129895385 to 129895399 14 - TSS region transcription start site region 26280
Cpgi12254 2 129908913 to 129909583 670 CpG island CpG island 12254
Gm10183 2 129927502 to 129929631 2129 unclassified gene predicted gene 10183
Gm28196 2 129948568 to 129949207 639 + lincRNA gene predicted gene 28196
Tssr20191 2 130012336 to 130012350 14 + TSS region transcription start site region 20191
Tgm3 2 130012349 to 130050399 38050 + protein coding gene transglutaminase 3, E polypeptide
Mir6339 2 130016292 to 130016408 116 - miRNA gene microRNA 6339
Tssr20192 2 130038450 to 130038476 26 + TSS region transcription start site region 20192
Tssr20193 2 130040415 to 130040448 33 + TSS region transcription start site region 20193
Tssr20194 2 130044531 to 130044540 9 + TSS region transcription start site region 20194
Tssr20195 2 130044616 to 130044621 5 + TSS region transcription start site region 20195
Tssr26281 2 130048343 to 130048348 5 - TSS region transcription start site region 26281
Tssr26282 2 130048533 to 130048550 17 - TSS region transcription start site region 26282
Tssr20196 2 130048544 to 130048569 25 + TSS region transcription start site region 20196
Tssr26283 2 130048588 to 130048599 11 - TSS region transcription start site region 26283
Gm22424 2 130071724 to 130071810 86 + snoRNA gene predicted gene, 22424
Gm24665 2 130086041 to 130086169 128 + snoRNA gene predicted gene, 24665
AU015228 2 130100524 to 130101843 1319 + pseudogene expressed sequence AU015228
Cpgi12255 2 130101400 to 130101621 221 CpG island CpG island 12255
Tgm6 2 130112416 to 130154232 41816 + protein coding gene transglutaminase 6
Tssr20197 2 130123275 to 130123293 18 + TSS region transcription start site region 20197
Tssr20198 2 130123310 to 130123314 4 + TSS region transcription start site region 20198
Cpgi12256 2 130145016 to 130145208 192 CpG island CpG island 12256
Snrpb 2 130171636 to 130179385 7749 - protein coding gene small nuclear ribonucleoprotein B
Tssr20199 2 130171883 to 130171905 22 + TSS region transcription start site region 20199
Cpgi12257 2 130178547 to 130179847 1300 CpG island CpG island 12257
Tssr26284 2 130179310 to 130179376 66 - TSS region transcription start site region 26284
Tmc2 2 130195194 to 130264445 69251 + protein coding gene transmembrane channel-like gene family 2
2810036E18Rik 2 130273773 to 130274268 495 unclassified gene RIKEN cDNA 2810036E18 gene
Cpgi12258 2 130273940 to 130274890 950 CpG island CpG island 12258
Tssr26285 2 130274227 to 130274284 57 - TSS region transcription start site region 26285
Tssr20200 2 130274424 to 130274435 11 + TSS region transcription start site region 20200
Nop56 2 130274430 to 130279313 4883 + protein coding gene NOP56 ribonucleoprotein
Tssr20201 2 130274437 to 130274454 17 + TSS region transcription start site region 20201
Tssr20202 2 130275507 to 130275509 2 + TSS region transcription start site region 20202
Snord110 2 130275515 to 130275573 58 + snoRNA gene small nucleolar RNA, C/D box 110
Gm24451 2 130276237 to 130276369 132 + snoRNA gene predicted gene, 24451
Gm23187 2 130277195 to 130277280 85 + snoRNA gene predicted gene, 23187
Tssr20203 2 130277197 to 130277201 4 + TSS region transcription start site region 20203
Tssr20204 2 130277696 to 130277700 4 + TSS region transcription start site region 20204
Gm23650 2 130277697 to 130277766 69 + snoRNA gene predicted gene, 23650
Snord57 2 130278026 to 130278088 62 + snoRNA gene small nucleolar RNA, C/D box 57
Idh3b 2 130279309 to 130284542 5233 - protein coding gene isocitrate dehydrogenase 3 (NAD+) beta
Tssr26286 2 130279358 to 130279374 16 - TSS region transcription start site region 26286
Tssr26287 2 130279375 to 130279423 48 - TSS region transcription start site region 26287
Tssr26288 2 130279475 to 130279492 17 - TSS region transcription start site region 26288
Tssr26289 2 130279629 to 130279652 23 - TSS region transcription start site region 26289
Cpgi12259 2 130283843 to 130284638 795 CpG island CpG island 12259
Tssr26290 2 130284422 to 130284451 29 - TSS region transcription start site region 26290
Tssr652 2 130292304 to 130292305 1 + TSS region transcription start site region 652
Gm30169 2 130293561 to 130295112 1551 - lncRNA gene predicted gene, 30169
Cpgi12260 2 130294628 to 130296564 1936 CpG island CpG island 12260
Tssr20205 2 130295148 to 130295236 88 + TSS region transcription start site region 20205
Ebf4 2 130295249 to 130370482 75233 + protein coding gene early B cell factor 4
Gm39936 2 130344471 to 130347244 2773 + lncRNA gene predicted gene, 39936
Cpgi12261 2 130361710 to 130362586 876 CpG island CpG island 12261
Cpgi12262 2 130365314 to 130365729 415 CpG island CpG island 12262
Tssr20206 2 130371346 to 130371349 3 + TSS region transcription start site region 20206
Gm14044 2 130384883 to 130385329 446 - pseudogene predicted gene 14044
C130063K03Rik 2 130388030 to 130389703 1673 unclassified gene RIKEN cDNA C130063K03 gene
Cpxm1 2 130390775 to 130397574 6799 - protein coding gene carboxypeptidase X 1 (M14 family)
Tssr26291 2 130393245 to 130393254 9 - TSS region transcription start site region 26291
Tssr26292 2 130393263 to 130393279 16 - TSS region transcription start site region 26292
Cpgi12263 2 130397172 to 130398191 1019 CpG island CpG island 12263
Tssr26293 2 130397525 to 130397587 62 - TSS region transcription start site region 26293
Tssr653 2 130397593 to 130397598 5 - TSS region transcription start site region 653
Gm14042 2 130400437 to 130401269 832 + pseudogene predicted gene 14042
Gm28372 2 130405239 to 130408256 3017 + protein coding gene predicted gene 28372
Tssr20207 2 130405256 to 130405296 40 + TSS region transcription start site region 20207
1700020A23Rik 2 130405259 to 130406074 815 + protein coding gene RIKEN cDNA 1700020A23 gene
Tssr20208 2 130405771 to 130405782 11 + TSS region transcription start site region 20208
Tssr20209 2 130406504 to 130406532 28 + TSS region transcription start site region 20209
Tmem239 2 130406522 to 130407794 1272 + protein coding gene transmembrane 239
D2Mit258 2 130407617 to 130407721 104 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 258
Pced1a 2 130417683 to 130424641 6958 - protein coding gene PC-esterase domain containing 1A
Cpgi12264 2 130423408 to 130424925 1517 CpG island CpG island 12264
Tssr26294 2 130423748 to 130423812 64 - TSS region transcription start site region 26294
Tssr26295 2 130424242 to 130424293 51 - TSS region transcription start site region 26295
Tssr26296 2 130424296 to 130424306 10 - TSS region transcription start site region 26296
Tssr20210 2 130424321 to 130424393 72 + TSS region transcription start site region 20210
Vps16 2 130424339 to 130444269 19930 + protein coding gene VSP16 CORVET/HOPS core subunit
Tssr26297 2 130424673 to 130424728 55 - TSS region transcription start site region 26297
Tssr26298 2 130424742 to 130424790 48 - TSS region transcription start site region 26298
D2Mit78 2 130449734 to 130449948 214 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 78
Cpgi12265 2 130449893 to 130450944 1051 CpG island CpG island 12265
Ptpra 2 130450251 to 130554300 104049 + protein coding gene protein tyrosine phosphatase, receptor type, A
Tssr20211 2 130450259 to 130450309 50 + TSS region transcription start site region 20211
Tssr20212 2 130450310 to 130450326 16 + TSS region transcription start site region 20212
Tssr20213 2 130450329 to 130450349 20 + TSS region transcription start site region 20213
Tssr20214 2 130450379 to 130450384 5 + TSS region transcription start site region 20214
Tssr20215 2 130479701 to 130479711 10 + TSS region transcription start site region 20215
Tssr20216 2 130482382 to 130482398 16 + TSS region transcription start site region 20216
Tssr26299 2 130488737 to 130488744 7 - TSS region transcription start site region 26299
Tssr20217 2 130490557 to 130490561 4 + TSS region transcription start site region 20217
Tssr20218 2 130503981 to 130503986 5 + TSS region transcription start site region 20218
Tssr20219 2 130504280 to 130504308 28 + TSS region transcription start site region 20219