Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:127740183-128290187

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nphp1 2 127740732 to 127788897 48165 - protein coding gene nephronophthisis 1 (juvenile) homolog (human)
Tssr26142 2 127744513 to 127744560 47 - TSS region transcription start site region 26142
Tssr26143 2 127755717 to 127755718 1 - TSS region transcription start site region 26143
Cpgi12230 2 127788580 to 127788969 389 CpG island CpG island 12230
Tssr26144 2 127788854 to 127788900 46 - TSS region transcription start site region 26144
Mtln 2 127791388 to 127792488 1100 - protein coding gene mitoregulin
Cpgi12231 2 127792068 to 127792704 636 CpG island CpG island 12231
Tssr26145 2 127792467 to 127792505 38 - TSS region transcription start site region 26145
Bub1 2 127801122 to 127831865 30743 - protein coding gene BUB1, mitotic checkpoint serine/threonine kinase
Tssr26146 2 127811888 to 127811905 17 - TSS region transcription start site region 26146
Cpgi12232 2 127831430 to 127832076 646 CpG island CpG island 12232
Tssr26147 2 127831817 to 127831875 58 - TSS region transcription start site region 26147
Tssr20035 2 127838784 to 127838799 15 + TSS region transcription start site region 20035
Tssr20036 2 127838814 to 127838836 22 + TSS region transcription start site region 20036
Acoxl 2 127838876 to 128123873 284997 + protein coding gene acyl-Coenzyme A oxidase-like
Gm22411 2 127891988 to 127892113 125 + miRNA gene predicted gene, 22411
Gm19501 2 127909591 to 127911285 1694 + unclassified gene predicted gene, 19501
0610042E11Rik 2 127920241 to 127922792 2551 unclassified gene RIKEN cDNA 0610042E11 gene
Tssr26148 2 127975630 to 127975653 23 - TSS region transcription start site region 26148
Tssr20037 2 128015183 to 128015187 4 + TSS region transcription start site region 20037
Tssr26149 2 128054962 to 128054967 5 - TSS region transcription start site region 26149
Tssr20038 2 128055171 to 128055184 13 + TSS region transcription start site region 20038
Tssr20039 2 128055191 to 128055202 11 + TSS region transcription start site region 20039
Tssr20040 2 128063100 to 128063109 9 + TSS region transcription start site region 20040
Tssr20041 2 128063121 to 128063139 18 + TSS region transcription start site region 20041
Gm23101 2 128089924 to 128090060 136 + snRNA gene predicted gene, 23101
Tssr638 2 128114376 to 128114379 3 + TSS region transcription start site region 638
D2Mit487 2 128115674 to 128115768 94 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 487
Gm39926 2 128122229 to 128126230 4001 - lncRNA gene predicted gene, 39926
Cpgi12233 2 128122856 to 128123217 361 CpG island CpG island 12233
Cpgi12234 2 128123540 to 128123956 416 CpG island CpG island 12234
Cpgi12235 2 128125028 to 128128258 3230 CpG island CpG island 12235
Tssr20042 2 128126030 to 128126056 26 + TSS region transcription start site region 20042
Bcl2l11 2 128126038 to 128162547 36509 + protein coding gene BCL2-like 11 (apoptosis facilitator)
Tssr26150 2 128127400 to 128127412 12 - TSS region transcription start site region 26150
Tssr20043 2 128127558 to 128127572 14 + TSS region transcription start site region 20043
Tssr20044 2 128127587 to 128127643 56 + TSS region transcription start site region 20044
Tssr26151 2 128128024 to 128128032 8 - TSS region transcription start site region 26151
Tssr20045 2 128128111 to 128128124 13 + TSS region transcription start site region 20045
Tssr20046 2 128128125 to 128128152 27 + TSS region transcription start site region 20046
Tssr20047 2 128128717 to 128128735 18 + TSS region transcription start site region 20047
Tssr20048 2 128132618 to 128132622 4 + TSS region transcription start site region 20048
Tssr20049 2 128158691 to 128158697 6 + TSS region transcription start site region 20049
Tssr639 2 128159264 to 128159269 5 + TSS region transcription start site region 639
Tssr20050 2 128159285 to 128159295 10 + TSS region transcription start site region 20050
Tssr20051 2 128169750 to 128169759 9 + TSS region transcription start site region 20051
Tssr26152 2 128179148 to 128179172 24 - TSS region transcription start site region 26152
Gm14009 2 128189987 to 128204634 14647 + lincRNA gene predicted gene 14009
Tssr20052 2 128190429 to 128190461 32 + TSS region transcription start site region 20052
Tssr20053 2 128204258 to 128204265 7 + TSS region transcription start site region 20053
Tssr640 2 128204292 to 128204310 18 + TSS region transcription start site region 640
Tssr20054 2 128204332 to 128204347 15 + TSS region transcription start site region 20054
Gm14012 2 128237693 to 128239643 1950 - lincRNA gene predicted gene 14012
Tssr26153 2 128257705 to 128257743 38 - TSS region transcription start site region 26153