Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:123773118-126363133

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181 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tbvq2 2 115600000 to 124900000 9300000 QTL trabecular bone volume QTL 2
Cfq7 2 118526291 to 125206952 6680661 QTL conditioned fear QTL 7
pta 2 119524913 to 125725738 6200825 heritable phenotypic marker persistent truncus arteriosus
Gm39919 2 123774494 to 123798418 23924 - lncRNA gene predicted gene, 39919
D2Mit446 2 124038907 to 124039028 121 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 446
D2Mit485 2 124069227 to 124069350 123 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 485
Cpgi12189 2 124089777 to 124091054 1277 CpG island CpG island 12189
Tssr19870 2 124089961 to 124090018 57 + TSS region transcription start site region 19870
Sema6d 2 124089969 to 124667770 577801 + protein coding gene sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
4930517E11Rik 2 124123636 to 124129956 6320 - lincRNA gene RIKEN cDNA 4930517E11 gene
Tssr630 2 124174431 to 124174433 2 + TSS region transcription start site region 630
4930583P06Rik 2 124217679 to 124222331 4652 - lincRNA gene RIKEN cDNA 4930583P06 gene
Tssr25991 2 124222355 to 124222375 20 - TSS region transcription start site region 25991
Bw25 2 124413756 to 124413756 0 QTL body weight QTL 25
Tssr25992 2 124490181 to 124490183 2 - TSS region transcription start site region 25992
Cpgi12190 2 124609682 to 124611058 1376 CpG island CpG island 12190
Tssr19871 2 124609881 to 124609904 23 + TSS region transcription start site region 19871
Tssr631 2 124610068 to 124610131 63 + TSS region transcription start site region 631
Tssr19872 2 124610278 to 124610285 7 + TSS region transcription start site region 19872
Tssr19873 2 124610422 to 124610436 14 + TSS region transcription start site region 19873
Tssr19874 2 124610592 to 124610613 21 + TSS region transcription start site region 19874
Tssr19875 2 124649342 to 124649348 6 + TSS region transcription start site region 19875
Gm34484 2 124705850 to 124720962 15112 - lncRNA gene predicted gene, 34484
Gm13994 2 124708655 to 124711083 2428 + lincRNA gene predicted gene 13994
Tssr25993 2 124711095 to 124711106 11 - TSS region transcription start site region 25993
Tssr25994 2 124711537 to 124711542 5 - TSS region transcription start site region 25994
D2Mit16a 2 124727634 to 124727860 226 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 16a
D2Mit16b 2 124727695 to 124727860 165 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 16b
D2Mit16.1 2 124727844 to 124727971 127 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 16.1
Gm39920 2 124730386 to 124788925 58539 - lncRNA gene predicted gene, 39920
D2Mit337 2 124751798 to 124751921 123 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 337
D2Dcr69 2 124815209 to 124815307 98 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 69
Tssr19876 2 125018893 to 125018895 2 + TSS region transcription start site region 19876
Tssr19877 2 125068118 to 125068133 15 + TSS region transcription start site region 19877
Slc24a5 2 125068127 to 125088677 20550 + protein coding gene solute carrier family 24, member 5
Tssr19878 2 125068148 to 125068163 15 + TSS region transcription start site region 19878
Myef2 2 125084628 to 125123661 39033 - protein coding gene myelin basic protein expression factor 2, repressor
Tssr25995 2 125088671 to 125088678 7 - TSS region transcription start site region 25995
Tssr25996 2 125100888 to 125100892 4 - TSS region transcription start site region 25996
Gm22352 2 125105009 to 125105115 106 + snRNA gene predicted gene, 22352
Cpgi12191 2 125122884 to 125124127 1243 CpG island CpG island 12191
Tssr25997 2 125123581 to 125123617 36 - TSS region transcription start site region 25997
Tssr25998 2 125123618 to 125123648 30 - TSS region transcription start site region 25998
Gm46759 2 125123724 to 125126217 2493 + lncRNA gene predicted gene, 46759
Gm14004 2 125124356 to 125134327 9971 - unclassified non-coding RNA gene predicted gene 14004
Cpgi12192 2 125136263 to 125136772 509 CpG island CpG island 12192
Tssr19879 2 125136598 to 125136623 25 + TSS region transcription start site region 19879
Ctxn2 2 125136692 to 125147839 11147 + protein coding gene cortexin 2
Tssr19880 2 125136748 to 125136769 21 + TSS region transcription start site region 19880
Tssr19881 2 125151834 to 125151846 12 + TSS region transcription start site region 19881
Tssr19882 2 125152592 to 125152606 14 + TSS region transcription start site region 19882
Slc12a1 2 125152600 to 125230002 77402 + protein coding gene solute carrier family 12, member 1
Tssr19883 2 125154021 to 125154032 11 + TSS region transcription start site region 19883
Cpgi12193 2 125154157 to 125154404 247 CpG island CpG island 12193
Tssr19884 2 125158428 to 125158429 1 + TSS region transcription start site region 19884
Tssr19885 2 125158920 to 125158937 17 + TSS region transcription start site region 19885
Tssr19886 2 125161306 to 125161309 3 + TSS region transcription start site region 19886
Tssr19887 2 125162992 to 125163001 9 + TSS region transcription start site region 19887
Tssr19888 2 125164806 to 125164808 2 + TSS region transcription start site region 19888
Cpgi12194 2 125186321 to 125186536 215 CpG island CpG island 12194
Tssr19889 2 125188980 to 125188987 7 + TSS region transcription start site region 19889
Gm46760 2 125195148 to 125203407 8259 - lncRNA gene predicted gene, 46760
Gm14002 2 125207529 to 125217512 9983 - antisense lncRNA gene predicted gene 14002
Tssr19890 2 125218139 to 125218146 7 + TSS region transcription start site region 19890
Tssr19891 2 125229441 to 125229453 12 + TSS region transcription start site region 19891
Tssr19892 2 125229552 to 125229561 9 + TSS region transcription start site region 19892
Tssr19893 2 125235852 to 125235854 2 + TSS region transcription start site region 19893
Cpgi12195 2 125247102 to 125248138 1036 CpG island CpG island 12195
Dut 2 125247190 to 125258608 11418 + protein coding gene deoxyuridine triphosphatase
Tssr19894 2 125247226 to 125247287 61 + TSS region transcription start site region 19894
Tssr19895 2 125247709 to 125247743 34 + TSS region transcription start site region 19895
Tssr19896 2 125256434 to 125256445 11 + TSS region transcription start site region 19896
Tssr19897 2 125256470 to 125256476 6 + TSS region transcription start site region 19897
A530010F05Rik 2 125274564 to 125277172 2608 + antisense lncRNA gene RIKEN cDNA A530010F05 gene
Gm14003 2 125282688 to 125283978 1290 - lincRNA gene predicted gene 14003
Fbn1 2 125300594 to 125506485 205891 - protein coding gene fibrillin 1
Tssr25999 2 125301723 to 125301736 13 - TSS region transcription start site region 25999
D2Mit459 2 125365310 to 125365429 119 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 459
Tssr26000 2 125397811 to 125397842 31 - TSS region transcription start site region 26000
Gm9913 2 125505089 to 125507881 2792 + protein coding gene predicted gene 9913
Cpgi12196 2 125505221 to 125507031 1810 CpG island CpG island 12196
Tssr26001 2 125505937 to 125505944 7 - TSS region transcription start site region 26001
Tssr26002 2 125505957 to 125505977 20 - TSS region transcription start site region 26002
Tssr26003 2 125506023 to 125506047 24 - TSS region transcription start site region 26003
Tssr26004 2 125506052 to 125506084 32 - TSS region transcription start site region 26004
Tssr26005 2 125506395 to 125506408 13 - TSS region transcription start site region 26005
Tssr26006 2 125506419 to 125506445 26 - TSS region transcription start site region 26006
Cep152 2 125563088 to 125625113 62025 - protein coding gene centrosomal protein 152
Gm35029 2 125590246 to 125594940 4694 + lncRNA gene predicted gene, 35029
Tssr19898 2 125591641 to 125591656 15 + TSS region transcription start site region 19898
Gm34949 2 125596702 to 125598119 1417 + pseudogene predicted gene, 34949
Cpgi12197 2 125624773 to 125625392 619 CpG island CpG island 12197
Tssr26007 2 125625065 to 125625123 58 - TSS region transcription start site region 26007
Shc4 2 125627447 to 125724148 96701 - protein coding gene SHC (Src homology 2 domain containing) family, member 4
Cpgi12198 2 125660844 to 125661078 234 CpG island CpG island 12198
D2Mit105 2 125665713 to 125665820 107 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 105
Cpgi12199 2 125672655 to 125673710 1055 CpG island CpG island 12199
Tssr19899 2 125673077 to 125673133 56 + TSS region transcription start site region 19899
Eid1 2 125673095 to 125674785 1690 + protein coding gene EP300 interacting inhibitor of differentiation 1
Tssr19900 2 125673149 to 125673184 35 + TSS region transcription start site region 19900
Tssr19901 2 125673683 to 125673694 11 + TSS region transcription start site region 19901
Tssr19902 2 125674054 to 125674074 20 + TSS region transcription start site region 19902
Gm35231 2 125692933 to 125694813 1880 + lncRNA gene predicted gene, 35231
Cpgi12200 2 125723069 to 125723634 565 CpG island CpG island 12200
Tssr26008 2 125723524 to 125723537 13 - TSS region transcription start site region 26008
Tssr26009 2 125723657 to 125723691 34 - TSS region transcription start site region 26009
Tssr26010 2 125723707 to 125723723 16 - TSS region transcription start site region 26010
D2Mit398 2 125725594 to 125725738 144 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 398
D2Dcr70 2 125725636 to 125725735 99 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 70
Cpgi12201 2 125731797 to 125732134 337 CpG island CpG island 12201
BC026863 2 125732165 to 125733495 1330 unclassified gene cDNA sequence BC026863
Secisbp2l 2 125736986 to 125782870 45884 - protein coding gene SECIS binding protein 2-like
Tssr26011 2 125737885 to 125737890 5 - TSS region transcription start site region 26011
Tssr26012 2 125760382 to 125760403 21 - TSS region transcription start site region 26012
Tssr26013 2 125767984 to 125767988 4 - TSS region transcription start site region 26013
D2Dcr71 2 125772560 to 125772658 98 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 71
Tssr26014 2 125773412 to 125773470 58 - TSS region transcription start site region 26014
Tssr26015 2 125775607 to 125775629 22 - TSS region transcription start site region 26015
Tssr26016 2 125780563 to 125780586 23 - TSS region transcription start site region 26016
Cpgi12202 2 125782353 to 125783061 708 CpG island CpG island 12202
Tssr26017 2 125782712 to 125782730 18 - TSS region transcription start site region 26017
Tssr26018 2 125782734 to 125782772 38 - TSS region transcription start site region 26018
Tssr26019 2 125782774 to 125782802 28 - TSS region transcription start site region 26019
Tssr26020 2 125782815 to 125782826 11 - TSS region transcription start site region 26020
Tssr26021 2 125782834 to 125782845 11 - TSS region transcription start site region 26021
Tssr26022 2 125788358 to 125788364 6 - TSS region transcription start site region 26022
Tssr26023 2 125789469 to 125789491 22 - TSS region transcription start site region 26023
Tssr19903 2 125791695 to 125791706 11 + TSS region transcription start site region 19903
Tssr19904 2 125791725 to 125791782 57 + TSS region transcription start site region 19904
Tssr19905 2 125796852 to 125796869 17 + TSS region transcription start site region 19905
Cops2 2 125830302 to 125859082 28780 - protein coding gene COP9 signalosome subunit 2
Tssr26024 2 125831345 to 125831349 4 - TSS region transcription start site region 26024
Tssr19906 2 125838443 to 125838463 20 + TSS region transcription start site region 19906
Tssr26025 2 125839466 to 125839493 27 - TSS region transcription start site region 26025
Cpgi12203 2 125858475 to 125859396 921 CpG island CpG island 12203
Tssr26026 2 125858985 to 125859027 42 - TSS region transcription start site region 26026
Galk2 2 125859109 to 125984298 125189 + protein coding gene galactokinase 2
Tssr19907 2 125859163 to 125859225 62 + TSS region transcription start site region 19907
Tssr26027 2 125859198 to 125859221 23 - TSS region transcription start site region 26027
Cpgi12204 2 125866129 to 125866441 312 CpG island CpG island 12204
Tssr19908 2 125866224 to 125866282 58 + TSS region transcription start site region 19908
Tssr19909 2 125866283 to 125866305 22 + TSS region transcription start site region 19909
Tssr19910 2 125866319 to 125866330 11 + TSS region transcription start site region 19910
Tssr19911 2 125893335 to 125893342 7 + TSS region transcription start site region 19911
Tssr19912 2 125893345 to 125893368 23 + TSS region transcription start site region 19912
Tssr19913 2 125893377 to 125893388 11 + TSS region transcription start site region 19913
Tssr19914 2 125909125 to 125909130 5 + TSS region transcription start site region 19914
Tssr19915 2 125912669 to 125912680 11 + TSS region transcription start site region 19915
Tssr19916 2 125941754 to 125941762 8 + TSS region transcription start site region 19916
Tssr19917 2 125947851 to 125947854 3 + TSS region transcription start site region 19917
Fam227b 2 125983483 to 126152004 168521 - protein coding gene family with sequence similarity 227, member B
Tssr19918 2 125986764 to 125986798 34 + TSS region transcription start site region 19918
Tssr19919 2 126025309 to 126025322 13 + TSS region transcription start site region 19919
Tssr19920 2 126034557 to 126034573 16 + TSS region transcription start site region 19920
Tssr19921 2 126034637 to 126034646 9 + TSS region transcription start site region 19921
Tssr19922 2 126034647 to 126034665 18 + TSS region transcription start site region 19922
Fgf7 2 126034658 to 126091185 56527 + protein coding gene fibroblast growth factor 7
Tssr19923 2 126034666 to 126034679 13 + TSS region transcription start site region 19923
Tssr19924 2 126034765 to 126034794 29 + TSS region transcription start site region 19924
Tssr19925 2 126034795 to 126034808 13 + TSS region transcription start site region 19925
Tssr19926 2 126034967 to 126034980 13 + TSS region transcription start site region 19926
Tssr19927 2 126035666 to 126035690 24 + TSS region transcription start site region 19927
Tssr19928 2 126035695 to 126035724 29 + TSS region transcription start site region 19928
Tssr19929 2 126035781 to 126035798 17 + TSS region transcription start site region 19929
Tssr19930 2 126035925 to 126035940 15 + TSS region transcription start site region 19930
Gm26496 2 126109908 to 126110014 106 - snRNA gene predicted gene, 26496
Cpgi12205 2 126151835 to 126152599 764 CpG island CpG island 12205
Tssr26028 2 126151956 to 126151961 5 - TSS region transcription start site region 26028
Tssr26029 2 126151968 to 126152009 41 - TSS region transcription start site region 26029
Tssr26030 2 126152015 to 126152042 27 - TSS region transcription start site region 26030
Tssr19931 2 126152131 to 126152146 15 + TSS region transcription start site region 19931
Dtwd1 2 126152141 to 126165279 13138 + protein coding gene DTW domain containing 1
Tssr19932 2 126152165 to 126152212 47 + TSS region transcription start site region 19932
Tbvq1 2 126200000 to 135600000 9400000 QTL trabecular bone volume QTL 1
Gm17555 2 126215100 to 126216212 1112 + protein coding gene predicted gene, 17555
Tssr19933 2 126232044 to 126232049 5 + TSS region transcription start site region 19933
Gm24739 2 126269072 to 126269363 291 - unclassified non-coding RNA gene predicted gene, 24739
Tssr26031 2 126315562 to 126315569 7 - TSS region transcription start site region 26031
Atp8b4 2 126320973 to 126500669 179696 - protein coding gene ATPase, class I, type 8B, member 4
Tssr26032 2 126321465 to 126321475 10 - TSS region transcription start site region 26032
Tssr26033 2 126321560 to 126321570 10 - TSS region transcription start site region 26033