Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:118615377-119209528

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141 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bub1b 2 118598211 to 118641591 43380 + protein coding gene BUB1B, mitotic checkpoint serine/threonine kinase
Tssr25783 2 118637526 to 118637564 38 - TSS region transcription start site region 25783
1700008N17Rik 2 118658819 to 118660069 1250 unclassified gene RIKEN cDNA 1700008N17 gene
Cpgi12085 2 118663220 to 118663553 333 CpG island CpG island 12085
Tssr19565 2 118663235 to 118663309 74 + TSS region transcription start site region 19565
Pak6 2 118663303 to 118698020 34717 + protein coding gene p21 (RAC1) activated kinase 6
Tssr19566 2 118663311 to 118663328 17 + TSS region transcription start site region 19566
Tssr19567 2 118663722 to 118663762 40 + TSS region transcription start site region 19567
Cpgi12086 2 118676655 to 118678047 1392 CpG island CpG island 12086
Tssr613 2 118677228 to 118677283 55 + TSS region transcription start site region 613
Cpgi12087 2 118696421 to 118696708 287 CpG island CpG island 12087
Ankrd63 2 118699103 to 118703963 4860 - protein coding gene ankyrin repeat domain 63
Cpgi12088 2 118700234 to 118700565 331 CpG island CpG island 12088
Cpgi12089 2 118702202 to 118704696 2494 CpG island CpG island 12089
Plcb2 2 118707517 to 118728438 20921 - protein coding gene phospholipase C, beta 2
Tssr25784 2 118709717 to 118709728 11 - TSS region transcription start site region 25784
Tssr19568 2 118709867 to 118709884 17 + TSS region transcription start site region 19568
Cpgi12090 2 118710847 to 118711673 826 CpG island CpG island 12090
Tssr25785 2 118715450 to 118715458 8 - TSS region transcription start site region 25785
Tssr25786 2 118715467 to 118715478 11 - TSS region transcription start site region 25786
Tssr25787 2 118723516 to 118723534 18 - TSS region transcription start site region 25787
Tssr614 2 118728325 to 118728336 11 - TSS region transcription start site region 614
Tssr25788 2 118728345 to 118728367 22 - TSS region transcription start site region 25788
Tssr25789 2 118728372 to 118728428 56 - TSS region transcription start site region 25789
Tssr25790 2 118728430 to 118728446 16 - TSS region transcription start site region 25790
Tssr25791 2 118728526 to 118728544 18 - TSS region transcription start site region 25791
Tssr25792 2 118728578 to 118728630 52 - TSS region transcription start site region 25792
Cpgi12091 2 118745084 to 118746956 1872 CpG island CpG island 12091
Tssr19569 2 118745738 to 118745773 35 + TSS region transcription start site region 19569
Inafm2 2 118745758 to 118748810 3052 + protein coding gene InaF motif containing 2
Tssr19570 2 118745777 to 118745799 22 + TSS region transcription start site region 19570
Tssr19571 2 118746985 to 118746989 4 + TSS region transcription start site region 19571
Tssr19572 2 118747263 to 118747265 2 + TSS region transcription start site region 19572
Ccdc9b 2 118754158 to 118762661 8503 - protein coding gene coiled-coil domain containing 9B
Pwbwq1 2 118758772 to 160769245 42010473 QTL pre-weaning body weight QTL 1
Pwbwq5 2 118758772 to 160769245 42010473 QTL post-weaning body weight QTL 5
Pwgrq1 2 118758772 to 160769245 42010473 QTL pre-weaning growth rate QTL 1
Pwgrq2 2 118758772 to 160769245 42010473 QTL pre-weaning growth rate QTL 2
Tssr25793 2 118762607 to 118762666 59 - TSS region transcription start site region 25793
Tssr19573 2 118772766 to 118772780 14 + TSS region transcription start site region 19573
Phgr1 2 118772769 to 118778164 5395 + protein coding gene proline/histidine/glycine-rich 1
D2Mit444 2 118774692 to 118774866 174 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 444
Cpgi12092 2 118779501 to 118780152 651 CpG island CpG island 12092
Tssr19574 2 118779690 to 118779701 11 + TSS region transcription start site region 19574
Disp2 2 118779702 to 118795175 15473 + protein coding gene dispatched RND tramsporter family member 2
Tssr19575 2 118779703 to 118779777 74 + TSS region transcription start site region 19575
Tssr19576 2 118779814 to 118779819 5 + TSS region transcription start site region 19576
Tssr19577 2 118779897 to 118779900 3 + TSS region transcription start site region 19577
Tssr19578 2 118786090 to 118786097 7 + TSS region transcription start site region 19578
Cpgi12093 2 118790290 to 118791033 743 CpG island CpG island 12093
Gm38629 2 118799999 to 118811178 11179 + lncRNA gene predicted gene, 38629
Cpgi12094 2 118813930 to 118814712 782 CpG island CpG island 12094
Knstrn 2 118813988 to 118837210 23222 + protein coding gene kinetochore-localized astrin/SPAG5 binding
Tssr19579 2 118813995 to 118814027 32 + TSS region transcription start site region 19579
Tssr19580 2 118814029 to 118814040 11 + TSS region transcription start site region 19580
Tssr19581 2 118814195 to 118814235 40 + TSS region transcription start site region 19581
Tssr19582 2 118814237 to 118814261 24 + TSS region transcription start site region 19582
Gm14091 2 118829874 to 118834122 4248 - antisense lncRNA gene predicted gene 14091
Tssr19583 2 118830022 to 118830027 5 + TSS region transcription start site region 19583
Tssr25794 2 118834157 to 118834196 39 - TSS region transcription start site region 25794
Gm39913 2 118837390 to 118861882 24492 - lncRNA gene predicted gene, 39913
Cpgi12095 2 118861837 to 118862276 439 CpG island CpG island 12095
Ivd 2 118861959 to 118882907 20948 + protein coding gene isovaleryl coenzyme A dehydrogenase
Tssr19584 2 118861986 to 118862008 22 + TSS region transcription start site region 19584
Tssr19585 2 118862009 to 118862022 13 + TSS region transcription start site region 19585
Tssr19586 2 118870375 to 118870402 27 + TSS region transcription start site region 19586
Cpgi12096 2 118883274 to 118883794 520 CpG island CpG island 12096
Gm32798 2 118887481 to 118894929 7448 + lncRNA gene predicted gene, 32798
Gm32957 2 118895347 to 118900288 4941 - lncRNA gene predicted gene, 32957
Cpgi12097 2 118896220 to 118897157 937 CpG island CpG island 12097
Bahd1 2 118900377 to 118924528 24151 + protein coding gene bromo adjacent homology domain containing 1
Tssr19587 2 118900379 to 118900397 18 + TSS region transcription start site region 19587
Cpgi12098 2 118900746 to 118903143 2397 CpG island CpG island 12098
Tssr19588 2 118901381 to 118901403 22 + TSS region transcription start site region 19588
Tssr19589 2 118901428 to 118901488 60 + TSS region transcription start site region 19589
Tssr19590 2 118901589 to 118901617 28 + TSS region transcription start site region 19590
Tssr19591 2 118901621 to 118901663 42 + TSS region transcription start site region 19591
Cpgi12099 2 118926286 to 118927354 1068 CpG island CpG island 12099
Tssr19592 2 118926496 to 118926554 58 + TSS region transcription start site region 19592
Chst14 2 118926497 to 118928585 2088 + protein coding gene carbohydrate sulfotransferase 14
Tssr19593 2 118926555 to 118926575 20 + TSS region transcription start site region 19593
Tssr19594 2 118926576 to 118926608 32 + TSS region transcription start site region 19594
Cpgi12100 2 118972693 to 118973062 369 CpG island CpG island 12100
Cpgi12101 2 118976002 to 118976928 926 CpG island CpG island 12101
Gm39914 2 118979591 to 118988327 8736 - lncRNA gene predicted gene, 39914
Tssr19595 2 118997044 to 118997047 3 + TSS region transcription start site region 19595
Gm14089 2 118997068 to 119000684 3616 + antisense lncRNA gene predicted gene 14089
Tssr19596 2 119008132 to 119008149 17 + TSS region transcription start site region 19596
Uqcrh-ps2 2 119008209 to 119008477 268 + pseudogene ubiquinol-cytochrome c reductase hinge protein, pseudogene 2
Ccdc32 2 119017779 to 119029393 11614 - protein coding gene coiled-coil domain containing 32
Cpgi12102 2 119029219 to 119029505 286 CpG island CpG island 12102
Tssr25795 2 119029339 to 119029347 8 - TSS region transcription start site region 25795
Tssr25796 2 119029352 to 119029355 3 - TSS region transcription start site region 25796
Tssr25797 2 119029359 to 119029389 30 - TSS region transcription start site region 25797
Tssr25798 2 119029392 to 119029395 3 - TSS region transcription start site region 25798
Cpgi12103 2 119034707 to 119035515 808 CpG island CpG island 12103
Tssr19597 2 119034783 to 119034869 86 + TSS region transcription start site region 19597
Rpusd2 2 119034790 to 119039769 4979 + protein coding gene RNA pseudouridylate synthase domain containing 2
Tssr19598 2 119039200 to 119039207 7 + TSS region transcription start site region 19598
n-TSgct7 2 119046750 to 119046831 81 - tRNA gene nuclear encoded tRNA serine 7 (anticodon GCT)
Cpgi12104 2 119046869 to 119047696 827 CpG island CpG island 12104
Knl1 2 119047038 to 119104829 57791 + protein coding gene kinetochore scaffold 1
Tssr19599 2 119047116 to 119047121 5 + TSS region transcription start site region 19599
Tssr19600 2 119047129 to 119047159 30 + TSS region transcription start site region 19600
Tssr19601 2 119047162 to 119047214 52 + TSS region transcription start site region 19601
Tssr19602 2 119047376 to 119047388 12 + TSS region transcription start site region 19602
n-TIaat12 2 119056153 to 119056226 73 - tRNA gene nuclear encoded tRNA isoleucine 12 (anticodon GAT)
D2Mit133 2 119064160 to 119064359 199 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 133
W3q1 2 119064359 to 20892967 -98171392 QTL weight 3 weeks QTL 1
Hrtq1 2 119064359 to 20892967 -98171392 QTL heart weight QTL 1
Estoq1 2 119064359 to 20892967 -98171392 QTL embryo survival total QTL 1
Egq1 2 119064359 to 20892967 -98171392 QTL early growth QTL 1
W10q9 2 119064359 to 20892967 -98171392 QTL weight 10 weeks QTL 9
W6q1 2 119064359 to 20892967 -98171392 QTL weight 6 weeks QTL 1
Kidq1 2 119064359 to 20892967 -98171392 QTL kidney weight QTL 1
Lvrq1 2 119064359 to 20892967 -98171392 QTL liver weight QTL 1
Splq1 2 119064359 to 20892967 -98171392 QTL spleen weight QTL 1
Cpgi12105 2 119112379 to 119113297 918 CpG island CpG island 12105
Tssr25799 2 119112748 to 119112769 21 - TSS region transcription start site region 25799
Tssr19603 2 119112809 to 119112882 73 + TSS region transcription start site region 19603
Rad51 2 119112817 to 119136070 23253 + protein coding gene RAD51 recombinase
Rmdn3 2 119137001 to 119157034 20033 - protein coding gene regulator of microtubule dynamics 3
Cpgi12106 2 119156211 to 119157341 1130 CpG island CpG island 12106
Tssr25800 2 119156936 to 119156986 50 - TSS region transcription start site region 25800
Cpgi12107 2 119167322 to 119168253 931 CpG island CpG island 12107
Tssr19604 2 119167758 to 119167779 21 + TSS region transcription start site region 19604
Tssr19605 2 119167782 to 119167835 53 + TSS region transcription start site region 19605
Gchfr 2 119167788 to 119172389 4601 + protein coding gene GTP cyclohydrolase I feedback regulator
Dnajc17 2 119172500 to 119208795 36295 - protein coding gene DnaJ heat shock protein family (Hsp40) member C17
Tssr25801 2 119173168 to 119173175 7 - TSS region transcription start site region 25801
Tssr615 2 119174325 to 119174342 17 + TSS region transcription start site region 615
Tssr19606 2 119174483 to 119174527 44 + TSS region transcription start site region 19606
Gm14137 2 119174509 to 119177575 3066 + protein coding gene predicted gene 14137
Tssr19607 2 119174552 to 119174563 11 + TSS region transcription start site region 19607
Tssr25802 2 119175142 to 119175172 30 - TSS region transcription start site region 25802
Tssr616 2 119186235 to 119186240 5 + TSS region transcription start site region 616
Gm14138 2 119187517 to 119188258 741 + pseudogene predicted gene 14138
Cpgi12108 2 119208392 to 119209348 956 CpG island CpG island 12108
Zfyve19 2 119208720 to 119217050 8330 + protein coding gene zinc finger, FYVE domain containing 19
Tssr25803 2 119208767 to 119208802 35 - TSS region transcription start site region 25803
Tssr19608 2 119208975 to 119209029 54 + TSS region transcription start site region 19608