Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:11776429-12827209

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50 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fbh1 2 11742573 to 11777582 35009 - protein coding gene F-box DNA helicase 1
Cpgi11207 2 11777106 to 11779029 1923 CpG island CpG island 11207
Tssr22658 2 11777486 to 11777561 75 - TSS region transcription start site region 22658
Tssr22659 2 11777570 to 11777581 11 - TSS region transcription start site region 22659
Tssr16170 2 11777766 to 11777797 31 + TSS region transcription start site region 16170
Ankrd16 2 11777876 to 11790329 12453 + protein coding gene ankyrin repeat domain 16
Tssr16171 2 11777912 to 11777939 27 + TSS region transcription start site region 16171
Tssr16172 2 11778480 to 11778586 106 + TSS region transcription start site region 16172
D2Mit315 2 11898379 to 11898490 111 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 315
Gm34768 2 11900082 to 11910310 10228 + pseudogene predicted gene, 34768
Gm32204 2 11925843 to 11927868 2025 + protein coding gene predicted gene, 32204
Cpgi11208 2 12002238 to 12002412 174 CpG island CpG island 11208
Tssr22660 2 12013904 to 12013911 7 - TSS region transcription start site region 22660
D2Ertd357e 2 12068475 to 12068705 230 DNA segment DNA segment, Chr 2, ERATO Doi 357, expressed
Gm13310 2 12082612 to 12083992 1380 - pseudogene predicted gene 13310
Itga8 2 12106632 to 12301920 195288 - protein coding gene integrin alpha 8
Tssr22661 2 12111119 to 12111124 5 - TSS region transcription start site region 22661
D2Mit116 2 12124726 to 12124897 171 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 116
Cia23 2 12124726 to 66726109 54601383 QTL collagen induced arthritis QTL 23
Tssr22662 2 12128535 to 12128552 17 - TSS region transcription start site region 22662
Gm37701 2 12128643 to 12129742 1099 - unclassified gene predicted gene, 37701
D2Mit118 2 12193786 to 12193908 122 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 118
Tlcpl1 2 12224051 to 12224051 0 QTL tail clip latency 1
Tssr16173 2 12300678 to 12300687 9 + TSS region transcription start site region 16173
Tssr16174 2 12300794 to 12300834 40 + TSS region transcription start site region 16174
Tssr16175 2 12301019 to 12301032 13 + TSS region transcription start site region 16175
Tssr22663 2 12301050 to 12301095 45 - TSS region transcription start site region 22663
Tssr16176 2 12301208 to 12301217 9 + TSS region transcription start site region 16176
Tssr16177 2 12301229 to 12301250 21 + TSS region transcription start site region 16177
E030013I19Rik 2 12301246 to 12312315 11069 + antisense lncRNA gene RIKEN cDNA E030013I19 gene
Tssr16178 2 12301255 to 12301266 11 + TSS region transcription start site region 16178
Tssr16179 2 12301303 to 12301313 10 + TSS region transcription start site region 16179
Cpgi11209 2 12301429 to 12302209 780 CpG island CpG island 11209
Tssr22664 2 12301894 to 12301903 9 - TSS region transcription start site region 22664
Tssr22665 2 12301914 to 12301922 8 - TSS region transcription start site region 22665
Tssr22666 2 12301934 to 12301987 53 - TSS region transcription start site region 22666
Tssr22667 2 12301988 to 12301991 3 - TSS region transcription start site region 22667
Tssr22668 2 12301996 to 12302005 9 - TSS region transcription start site region 22668
Mindy3 2 12347263 to 12419470 72207 - protein coding gene MINDY lysine 48 deubiquitinase 3
Gm37289 2 12357095 to 12358496 1401 - unclassified gene predicted gene, 37289
Gm37255 2 12372212 to 12375271 3059 - unclassified gene predicted gene, 37255
Gm38014 2 12389872 to 12392483 2611 - unclassified gene predicted gene, 38014
Cpgi11210 2 12418613 to 12419539 926 CpG island CpG island 11210
Tssr22669 2 12419387 to 12419399 12 - TSS region transcription start site region 22669
Tssr22670 2 12419401 to 12419419 18 - TSS region transcription start site region 22670
Tssr22671 2 12419427 to 12419448 21 - TSS region transcription start site region 22671
Tssr22672 2 12419456 to 12419474 18 - TSS region transcription start site region 22672
Gm13321 2 12421627 to 12422026 399 - pseudogene predicted gene 13321
D2Mit429 2 12474345 to 12474466 121 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 429
Gm37565 2 12697417 to 12706853 9436 + lincRNA gene predicted gene, 37565