Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:11728679-14148683

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199 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Il15ra 2 11705169 to 11733985 28816 + protein coding gene interleukin 15 receptor, alpha chain
Fbh1 2 11742573 to 11777582 35009 - protein coding gene F-box DNA helicase 1
Gm46731 2 11743779 to 11745188 1409 - protein coding gene predicted gene, 46731
Cpgi11207 2 11777106 to 11779029 1923 CpG island CpG island 11207
Tssr22658 2 11777486 to 11777561 75 - TSS region transcription start site region 22658
Tssr22659 2 11777570 to 11777581 11 - TSS region transcription start site region 22659
Tssr16170 2 11777766 to 11777797 31 + TSS region transcription start site region 16170
Ankrd16 2 11777876 to 11790329 12453 + protein coding gene ankyrin repeat domain 16
Tssr16171 2 11777912 to 11777939 27 + TSS region transcription start site region 16171
Tssr16172 2 11778480 to 11778586 106 + TSS region transcription start site region 16172
D2Mit315 2 11898379 to 11898490 111 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 315
Gm34768 2 11900082 to 11910310 10228 + pseudogene predicted gene, 34768
Gm32204 2 11925843 to 11927868 2025 + protein coding gene predicted gene, 32204
Cpgi11208 2 12002238 to 12002412 174 CpG island CpG island 11208
Tssr22660 2 12013904 to 12013911 7 - TSS region transcription start site region 22660
D2Ertd357e 2 12068475 to 12068705 230 DNA segment DNA segment, Chr 2, ERATO Doi 357, expressed
Gm13310 2 12082612 to 12083992 1380 - pseudogene predicted gene 13310
Itga8 2 12106632 to 12301920 195288 - protein coding gene integrin alpha 8
Tssr22661 2 12111119 to 12111124 5 - TSS region transcription start site region 22661
D2Mit116 2 12124726 to 12124897 171 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 116
Cia23 2 12124726 to 66726109 54601383 QTL collagen induced arthritis QTL 23
Tssr22662 2 12128535 to 12128552 17 - TSS region transcription start site region 22662
Gm37701 2 12128643 to 12129742 1099 - unclassified gene predicted gene, 37701
D2Mit118 2 12193786 to 12193908 122 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 118
Tlcpl1 2 12224051 to 12224051 0 QTL tail clip latency 1
Tssr16173 2 12300678 to 12300687 9 + TSS region transcription start site region 16173
Tssr16174 2 12300794 to 12300834 40 + TSS region transcription start site region 16174
Tssr16175 2 12301019 to 12301032 13 + TSS region transcription start site region 16175
Tssr22663 2 12301050 to 12301095 45 - TSS region transcription start site region 22663
Tssr16176 2 12301208 to 12301217 9 + TSS region transcription start site region 16176
Tssr16177 2 12301229 to 12301250 21 + TSS region transcription start site region 16177
E030013I19Rik 2 12301246 to 12312315 11069 + antisense lncRNA gene RIKEN cDNA E030013I19 gene
Tssr16178 2 12301255 to 12301266 11 + TSS region transcription start site region 16178
Tssr16179 2 12301303 to 12301313 10 + TSS region transcription start site region 16179
Cpgi11209 2 12301429 to 12302209 780 CpG island CpG island 11209
Tssr22664 2 12301894 to 12301903 9 - TSS region transcription start site region 22664
Tssr22665 2 12301914 to 12301922 8 - TSS region transcription start site region 22665
Tssr22666 2 12301934 to 12301987 53 - TSS region transcription start site region 22666
Tssr22667 2 12301988 to 12301991 3 - TSS region transcription start site region 22667
Tssr22668 2 12301996 to 12302005 9 - TSS region transcription start site region 22668
Mindy3 2 12347263 to 12419470 72207 - protein coding gene MINDY lysine 48 deubiquitinase 3
Gm37289 2 12357095 to 12358496 1401 - unclassified gene predicted gene, 37289
Gm37255 2 12372212 to 12375271 3059 - unclassified gene predicted gene, 37255
Gm38014 2 12389872 to 12392483 2611 - unclassified gene predicted gene, 38014
Cpgi11210 2 12418613 to 12419539 926 CpG island CpG island 11210
Tssr22669 2 12419387 to 12419399 12 - TSS region transcription start site region 22669
Tssr22670 2 12419401 to 12419419 18 - TSS region transcription start site region 22670
Tssr22671 2 12419427 to 12419448 21 - TSS region transcription start site region 22671
Tssr22672 2 12419456 to 12419474 18 - TSS region transcription start site region 22672
Gm13321 2 12421627 to 12422026 399 - pseudogene predicted gene 13321
D2Mit429 2 12474345 to 12474466 121 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 429
Gm37565 2 12697417 to 12706853 9436 + lincRNA gene predicted gene, 37565
Tssr22673 2 12877781 to 12877786 5 - TSS region transcription start site region 22673
Cpgi11211 2 12924007 to 12924274 267 CpG island CpG island 11211
Pter 2 12924041 to 13003455 79414 + protein coding gene phosphotriesterase related
Tssr16180 2 12924053 to 12924113 60 + TSS region transcription start site region 16180
Tssr16181 2 12924120 to 12924134 14 + TSS region transcription start site region 16181
Tssr16182 2 12924136 to 12924143 7 + TSS region transcription start site region 16182
Tssr16183 2 12938679 to 12938683 4 + TSS region transcription start site region 16183
Tssr22674 2 12979609 to 12979610 1 - TSS region transcription start site region 22674
C1ql3 2 13003457 to 13011806 8349 - protein coding gene C1q-like 3
Gm37824 2 13004365 to 13007600 3235 + unclassified gene predicted gene, 37824
Gm37811 2 13009886 to 13012486 2600 + unclassified gene predicted gene, 37811
Cpgi11212 2 13009906 to 13011728 1822 CpG island CpG island 11212
Tssr22675 2 13010815 to 13010864 49 - TSS region transcription start site region 22675
Tssr22676 2 13010899 to 13010919 20 - TSS region transcription start site region 22676
Tssr22677 2 13011039 to 13011048 9 - TSS region transcription start site region 22677
Tssr22678 2 13011074 to 13011107 33 - TSS region transcription start site region 22678
Tssr22679 2 13011566 to 13011577 11 - TSS region transcription start site region 22679
Tssr22680 2 13011600 to 13011629 29 - TSS region transcription start site region 22680
Tssr22681 2 13011630 to 13011657 27 - TSS region transcription start site region 22681
Tssr22682 2 13011672 to 13011686 14 - TSS region transcription start site region 22682
Tssr22683 2 13011756 to 13011778 22 - TSS region transcription start site region 22683
Gm37356 2 13012624 to 13014236 1612 + unclassified gene predicted gene, 37356
Gm37742 2 13036126 to 13040104 3978 + unclassified gene predicted gene, 37742
1700016C23Rik 2 13042600 to 13045492 2892 unclassified gene RIKEN cDNA 1700016C23 gene
Rsu1 2 13076967 to 13271416 194449 - protein coding gene Ras suppressor protein 1
Gm38156 2 13116176 to 13118435 2259 - unclassified gene predicted gene, 38156
D2Mit427 2 13122624 to 13122742 118 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 427
9330179A15Rik 2 13149538 to 13149961 423 unclassified gene RIKEN cDNA 9330179A15 gene
Tssr22684 2 13156694 to 13156727 33 - TSS region transcription start site region 22684
Gm37780 2 13161751 to 13163623 1872 - unclassified gene predicted gene, 37780
Tssr22685 2 13219056 to 13219071 15 - TSS region transcription start site region 22685
Tssr22686 2 13223333 to 13223334 1 - TSS region transcription start site region 22686
Tssr22687 2 13224351 to 13224370 19 - TSS region transcription start site region 22687
Tssr22688 2 13224707 to 13224723 16 - TSS region transcription start site region 22688
Gm27540 2 13226828 to 13227014 186 + unclassified non-coding RNA gene predicted gene, 27540
Gm37160 2 13238939 to 13240627 1688 - unclassified gene predicted gene, 37160
Tssr22689 2 13257911 to 13257917 6 - TSS region transcription start site region 22689
Cpgi11213 2 13271170 to 13271843 673 CpG island CpG island 11213
Tssr22690 2 13271268 to 13271348 80 - TSS region transcription start site region 22690
Tssr22691 2 13271419 to 13271437 18 - TSS region transcription start site region 22691
Tssr22692 2 13271438 to 13271446 8 - TSS region transcription start site region 22692
Gm13270 2 13271540 to 13310119 38579 + lncRNA gene predicted gene 13270
Tssr16184 2 13271579 to 13271630 51 + TSS region transcription start site region 16184
Cubn 2 13276338 to 13491813 215475 - protein coding gene cubilin (intrinsic factor-cobalamin receptor)
Tssr22693 2 13283265 to 13283273 8 - TSS region transcription start site region 22693
Tssr22694 2 13410800 to 13410805 5 - TSS region transcription start site region 22694
Tssr16185 2 13411015 to 13411019 4 + TSS region transcription start site region 16185
Tssr22695 2 13413584 to 13413597 13 - TSS region transcription start site region 22695
Tssr22696 2 13424752 to 13424763 11 - TSS region transcription start site region 22696
Tssr22697 2 13424768 to 13424785 17 - TSS region transcription start site region 22697
Tssr16186 2 13481070 to 13481101 31 + TSS region transcription start site region 16186
Tssr22698 2 13491847 to 13491890 43 - TSS region transcription start site region 22698
Tssr22699 2 13491891 to 13491896 5 - TSS region transcription start site region 22699
Tssr22700 2 13491900 to 13491940 40 - TSS region transcription start site region 22700
Tssr22701 2 13491953 to 13491958 5 - TSS region transcription start site region 22701
Tssr22702 2 13491960 to 13491974 14 - TSS region transcription start site region 22702
Tssr22703 2 13491977 to 13492025 48 - TSS region transcription start site region 22703
Tssr22704 2 13492034 to 13492046 12 - TSS region transcription start site region 22704
Tssr22705 2 13493651 to 13493657 6 - TSS region transcription start site region 22705
Tssr22706 2 13493660 to 13493670 10 - TSS region transcription start site region 22706
Tssr22707 2 13493674 to 13493690 16 - TSS region transcription start site region 22707
Tssr22708 2 13493695 to 13493705 10 - TSS region transcription start site region 22708
Trdmt1 2 13509014 to 13544668 35654 - protein coding gene tRNA aspartic acid methyltransferase 1
Cpgi11214 2 13544420 to 13544795 375 CpG island CpG island 11214
Tssr22709 2 13544651 to 13544673 22 - TSS region transcription start site region 22709
Gm9875 2 13558323 to 13571736 13413 + lncRNA gene predicted gene 9875
Tssr22710 2 13558505 to 13558512 7 - TSS region transcription start site region 22710
D2Mit149.1 2 13571471 to 13571680 209 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 149.1
D2Mit149 2 13571654 to 13571852 198 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 149
Tssr22711 2 13572015 to 13572019 4 - TSS region transcription start site region 22711
Tssr22712 2 13573557 to 13573565 8 - TSS region transcription start site region 22712
Tssr16187 2 13573680 to 13573710 30 + TSS region transcription start site region 16187
Cpgi11215 2 13573898 to 13575329 1431 CpG island CpG island 11215
Tssr16188 2 13574006 to 13574028 22 + TSS region transcription start site region 16188
Tssr16189 2 13574032 to 13574075 43 + TSS region transcription start site region 16189
Tssr16190 2 13574094 to 13574114 20 + TSS region transcription start site region 16190
Tssr16191 2 13574299 to 13574318 19 + TSS region transcription start site region 16191
Vim 2 13574311 to 13582826 8515 + protein coding gene vimentin
Tssr22713 2 13574552 to 13574569 17 - TSS region transcription start site region 22713
Tssr22714 2 13574966 to 13575029 63 - TSS region transcription start site region 22714
Tssr16192 2 13575164 to 13575177 13 + TSS region transcription start site region 16192
Tssr16193 2 13575351 to 13575360 9 + TSS region transcription start site region 16193
Tssr16194 2 13575517 to 13575528 11 + TSS region transcription start site region 16194
Tssr16195 2 13575533 to 13575557 24 + TSS region transcription start site region 16195
Tssr16196 2 13575563 to 13575580 17 + TSS region transcription start site region 16196
Tssr16197 2 13578403 to 13578464 61 + TSS region transcription start site region 16197
Tssr16198 2 13578626 to 13578671 45 + TSS region transcription start site region 16198
Tssr16199 2 13578723 to 13578734 11 + TSS region transcription start site region 16199
Tssr16200 2 13578746 to 13578758 12 + TSS region transcription start site region 16200
Tssr16201 2 13578765 to 13578778 13 + TSS region transcription start site region 16201
Tssr16202 2 13578837 to 13578850 13 + TSS region transcription start site region 16202
Tssr16203 2 13578914 to 13578925 11 + TSS region transcription start site region 16203
Tssr16204 2 13579029 to 13579053 24 + TSS region transcription start site region 16204
Tssr16205 2 13579147 to 13579160 13 + TSS region transcription start site region 16205
Tssr16206 2 13579411 to 13579514 103 + TSS region transcription start site region 16206
Tssr16207 2 13579566 to 13579579 13 + TSS region transcription start site region 16207
Tssr16208 2 13580010 to 13580029 19 + TSS region transcription start site region 16208
Tssr16209 2 13580030 to 13580095 65 + TSS region transcription start site region 16209
Tssr22715 2 13580076 to 13580103 27 - TSS region transcription start site region 22715
Tssr16210 2 13580103 to 13580115 12 + TSS region transcription start site region 16210
Tssr16211 2 13580121 to 13580156 35 + TSS region transcription start site region 16211
Tssr16212 2 13580175 to 13580196 21 + TSS region transcription start site region 16212
Tssr22716 2 13580213 to 13580233 20 - TSS region transcription start site region 22716
Tssr16213 2 13580630 to 13580656 26 + TSS region transcription start site region 16213
Tssr16214 2 13580679 to 13580689 10 + TSS region transcription start site region 16214
Tssr16215 2 13580708 to 13580748 40 + TSS region transcription start site region 16215
Tssr16216 2 13581599 to 13581630 31 + TSS region transcription start site region 16216
Tssr16217 2 13581637 to 13581648 11 + TSS region transcription start site region 16217
Tssr22717 2 13581640 to 13581699 59 - TSS region transcription start site region 22717
Tssr16218 2 13582462 to 13582542 80 + TSS region transcription start site region 16218
Tssr22718 2 13582546 to 13582570 24 - TSS region transcription start site region 22718
Tssr16219 2 13582610 to 13582626 16 + TSS region transcription start site region 16219
Tssr16220 2 13582629 to 13582678 49 + TSS region transcription start site region 16220
Tssr22719 2 13582632 to 13582686 54 - TSS region transcription start site region 22719
Tssr16221 2 13582770 to 13582790 20 + TSS region transcription start site region 16221
St8sia6 2 13651021 to 13794064 143043 - protein coding gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6
Gm37126 2 13672516 to 13674434 1918 + antisense lncRNA gene predicted gene, 37126
Cpgi11216 2 13792760 to 13794163 1403 CpG island CpG island 11216
Tssr22720 2 13793031 to 13793036 5 - TSS region transcription start site region 22720
Tssr22721 2 13793728 to 13793753 25 - TSS region transcription start site region 22721
Tssr22722 2 13793793 to 13793806 13 - TSS region transcription start site region 22722
Tssr22723 2 13793817 to 13793879 62 - TSS region transcription start site region 22723
Tssr22724 2 13793911 to 13793920 9 - TSS region transcription start site region 22724
Tssr22725 2 13794013 to 13794025 12 - TSS region transcription start site region 22725
Tssr22726 2 13794032 to 13794041 9 - TSS region transcription start site region 22726
Tssr16222 2 13878952 to 13878958 6 + TSS region transcription start site region 16222
D930036K23Rik 2 14016086 to 14020049 3963 - unclassified gene RIKEN cDNA D930036K23 gene
5730447C08Rik 2 14020977 to 14021395 418 unclassified gene RIKEN cDNA 5730447C08 gene
D2Bwg0405e 2 14023789 to 14023952 163 DNA segment DNA segment, Chr 2, Brigham & Women's Genetics 0405 expressed
Hacd1 2 14026829 to 14056035 29206 - protein coding gene 3-hydroxyacyl-CoA dehydratase 1
Gm37894 2 14037825 to 14040423 2598 - unclassified gene predicted gene, 37894
Cpgi11217 2 14054913 to 14056485 1572 CpG island CpG island 11217
Tssr22727 2 14055890 to 14055917 27 - TSS region transcription start site region 22727
Tssr22728 2 14055929 to 14055956 27 - TSS region transcription start site region 22728
Tssr22729 2 14055963 to 14056022 59 - TSS region transcription start site region 22729
Tssr22730 2 14056029 to 14056044 15 - TSS region transcription start site region 22730
Tssr22731 2 14059899 to 14059915 16 - TSS region transcription start site region 22731
Stamos 2 14070333 to 14073934 3601 - lncRNA gene signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strand
Cpgi11218 2 14073507 to 14074701 1194 CpG island CpG island 11218
Tssr16223 2 14073607 to 14073625 18 + TSS region transcription start site region 16223
Tssr16224 2 14073629 to 14073672 43 + TSS region transcription start site region 16224
Stam 2 14073654 to 14148338 74684 + protein coding gene signal transducing adaptor molecule (SH3 domain and ITAM motif) 1
Tssr22732 2 14073851 to 14073867 16 - TSS region transcription start site region 22732
Tssr16225 2 14074091 to 14074146 55 + TSS region transcription start site region 16225
Tssr16226 2 14074147 to 14074191 44 + TSS region transcription start site region 16226
Tssr16227 2 14074218 to 14074235 17 + TSS region transcription start site region 16227
Tssr16228 2 14130842 to 14130853 11 + TSS region transcription start site region 16228