Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:11559707-14889723

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361 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi11204 2 11563375 to 11563534 159 CpG island CpG island 11204
Rbm17 2 11585439 to 11603199 17760 - protein coding gene RNA binding motif protein 17
Tssr22642 2 11596716 to 11596745 29 - TSS region transcription start site region 22642
Cpgi11205 2 11602496 to 11603442 946 CpG island CpG island 11205
Tssr22643 2 11603192 to 11603268 76 - TSS region transcription start site region 22643
Tssr22644 2 11605035 to 11605038 3 - TSS region transcription start site region 22644
Gm13260 2 11607417 to 11608537 1120 - pseudogene predicted gene 13260
Tssr22645 2 11620497 to 11620523 26 - TSS region transcription start site region 22645
Gm17490 2 11625606 to 11626264 658 - protein coding gene predicted gene, 17490
Tssr16128 2 11626173 to 11626202 29 + TSS region transcription start site region 16128
Tssr22646 2 11634903 to 11634908 5 - TSS region transcription start site region 22646
Tssr22647 2 11635093 to 11635097 4 - TSS region transcription start site region 22647
Tssr22648 2 11636208 to 11636224 16 - TSS region transcription start site region 22648
Tssr22649 2 11637184 to 11637205 21 - TSS region transcription start site region 22649
Tssr22650 2 11637252 to 11637285 33 - TSS region transcription start site region 22650
Tssr16129 2 11642786 to 11642798 12 + TSS region transcription start site region 16129
Tssr16130 2 11642799 to 11642812 13 + TSS region transcription start site region 16130
Il2ra 2 11642807 to 11693193 50386 + protein coding gene interleukin 2 receptor, alpha chain
Tssr16131 2 11642842 to 11642863 21 + TSS region transcription start site region 16131
Tssr16132 2 11645494 to 11645506 12 + TSS region transcription start site region 16132
Tssr16133 2 11645730 to 11645770 40 + TSS region transcription start site region 16133
Tssr22651 2 11646541 to 11646546 5 - TSS region transcription start site region 22651
Tssr22652 2 11646580 to 11646585 5 - TSS region transcription start site region 22652
Tssr22653 2 11651496 to 11651500 4 - TSS region transcription start site region 22653
Tssr16134 2 11653556 to 11653561 5 + TSS region transcription start site region 16134
Tssr16135 2 11653588 to 11653598 10 + TSS region transcription start site region 16135
Tssr16136 2 11654035 to 11654046 11 + TSS region transcription start site region 16136
Tssr16137 2 11654254 to 11654267 13 + TSS region transcription start site region 16137
Tssr22654 2 11655112 to 11655124 12 - TSS region transcription start site region 22654
Tssr16138 2 11655536 to 11655550 14 + TSS region transcription start site region 16138
Tssr22655 2 11659792 to 11659809 17 - TSS region transcription start site region 22655
Tssr16139 2 11666407 to 11666413 6 + TSS region transcription start site region 16139
Tssr16140 2 11667567 to 11667570 3 + TSS region transcription start site region 16140
Tssr22656 2 11671120 to 11671126 6 - TSS region transcription start site region 22656
Tssr22657 2 11676923 to 11676944 21 - TSS region transcription start site region 22657
Tssr16141 2 11678188 to 11678207 19 + TSS region transcription start site region 16141
Gm39760 2 11682688 to 11694588 11900 - lncRNA gene predicted gene, 39760
Gm37881 2 11683126 to 11683546 420 + unclassified gene predicted gene, 37881
Tssr16142 2 11689808 to 11689825 17 + TSS region transcription start site region 16142
Tssr16143 2 11689844 to 11689855 11 + TSS region transcription start site region 16143
Tssr16144 2 11689862 to 11689880 18 + TSS region transcription start site region 16144
Tssr16145 2 11689884 to 11689901 17 + TSS region transcription start site region 16145
Tssr16146 2 11689941 to 11689975 34 + TSS region transcription start site region 16146
Tssr16147 2 11690001 to 11690023 22 + TSS region transcription start site region 16147
Tssr16148 2 11690060 to 11690091 31 + TSS region transcription start site region 16148
Tssr16149 2 11690096 to 11690134 38 + TSS region transcription start site region 16149
Tssr16150 2 11690140 to 11690191 51 + TSS region transcription start site region 16150
Tssr16151 2 11690640 to 11690655 15 + TSS region transcription start site region 16151
Tssr16152 2 11690946 to 11691024 78 + TSS region transcription start site region 16152
Gm39759 2 11693584 to 11699526 5942 + lncRNA gene predicted gene, 39759
Tssr16153 2 11697993 to 11697997 4 + TSS region transcription start site region 16153
Il15ra 2 11705169 to 11733985 28816 + protein coding gene interleukin 15 receptor, alpha chain
Cpgi11206 2 11705315 to 11706286 971 CpG island CpG island 11206
Tssr16154 2 11705320 to 11705346 26 + TSS region transcription start site region 16154
Tssr16155 2 11705355 to 11705375 20 + TSS region transcription start site region 16155
Tssr16156 2 11705390 to 11705401 11 + TSS region transcription start site region 16156
Tssr16157 2 11705437 to 11705448 11 + TSS region transcription start site region 16157
Tssr16158 2 11705459 to 11705464 5 + TSS region transcription start site region 16158
Tssr16159 2 11705730 to 11705767 37 + TSS region transcription start site region 16159
Tssr16160 2 11705823 to 11705832 9 + TSS region transcription start site region 16160
Tssr16161 2 11712038 to 11712043 5 + TSS region transcription start site region 16161
Tssr16162 2 11713230 to 11713242 12 + TSS region transcription start site region 16162
Tssr16163 2 11723253 to 11723276 23 + TSS region transcription start site region 16163
Tssr16164 2 11723315 to 11723319 4 + TSS region transcription start site region 16164
Tssr16165 2 11724367 to 11724373 6 + TSS region transcription start site region 16165
Tssr16166 2 11725001 to 11725014 13 + TSS region transcription start site region 16166
Tssr16167 2 11725062 to 11725076 14 + TSS region transcription start site region 16167
Tssr16168 2 11725095 to 11725108 13 + TSS region transcription start site region 16168
Tssr16169 2 11725114 to 11725130 16 + TSS region transcription start site region 16169
Fbh1 2 11742573 to 11777582 35009 - protein coding gene F-box DNA helicase 1
Gm46731 2 11743779 to 11745188 1409 - protein coding gene predicted gene, 46731
Cpgi11207 2 11777106 to 11779029 1923 CpG island CpG island 11207
Tssr22658 2 11777486 to 11777561 75 - TSS region transcription start site region 22658
Tssr22659 2 11777570 to 11777581 11 - TSS region transcription start site region 22659
Tssr16170 2 11777766 to 11777797 31 + TSS region transcription start site region 16170
Ankrd16 2 11777876 to 11790329 12453 + protein coding gene ankyrin repeat domain 16
Tssr16171 2 11777912 to 11777939 27 + TSS region transcription start site region 16171
Tssr16172 2 11778480 to 11778586 106 + TSS region transcription start site region 16172
D2Mit315 2 11898379 to 11898490 111 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 315
Gm34768 2 11900082 to 11910310 10228 + pseudogene predicted gene, 34768
Gm32204 2 11925843 to 11927868 2025 + protein coding gene predicted gene, 32204
Cpgi11208 2 12002238 to 12002412 174 CpG island CpG island 11208
Tssr22660 2 12013904 to 12013911 7 - TSS region transcription start site region 22660
D2Ertd357e 2 12068475 to 12068705 230 DNA segment DNA segment, Chr 2, ERATO Doi 357, expressed
Gm13310 2 12082612 to 12083992 1380 - pseudogene predicted gene 13310
Itga8 2 12106632 to 12301920 195288 - protein coding gene integrin alpha 8
Tssr22661 2 12111119 to 12111124 5 - TSS region transcription start site region 22661
D2Mit116 2 12124726 to 12124897 171 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 116
Cia23 2 12124726 to 66726109 54601383 QTL collagen induced arthritis QTL 23
Tssr22662 2 12128535 to 12128552 17 - TSS region transcription start site region 22662
Gm37701 2 12128643 to 12129742 1099 - unclassified gene predicted gene, 37701
D2Mit118 2 12193786 to 12193908 122 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 118
Tlcpl1 2 12224051 to 12224051 0 QTL tail clip latency 1
Tssr16173 2 12300678 to 12300687 9 + TSS region transcription start site region 16173
Tssr16174 2 12300794 to 12300834 40 + TSS region transcription start site region 16174
Tssr16175 2 12301019 to 12301032 13 + TSS region transcription start site region 16175
Tssr22663 2 12301050 to 12301095 45 - TSS region transcription start site region 22663
Tssr16176 2 12301208 to 12301217 9 + TSS region transcription start site region 16176
Tssr16177 2 12301229 to 12301250 21 + TSS region transcription start site region 16177
E030013I19Rik 2 12301246 to 12312315 11069 + antisense lncRNA gene RIKEN cDNA E030013I19 gene
Tssr16178 2 12301255 to 12301266 11 + TSS region transcription start site region 16178
Tssr16179 2 12301303 to 12301313 10 + TSS region transcription start site region 16179
Cpgi11209 2 12301429 to 12302209 780 CpG island CpG island 11209
Tssr22664 2 12301894 to 12301903 9 - TSS region transcription start site region 22664
Tssr22665 2 12301914 to 12301922 8 - TSS region transcription start site region 22665
Tssr22666 2 12301934 to 12301987 53 - TSS region transcription start site region 22666
Tssr22667 2 12301988 to 12301991 3 - TSS region transcription start site region 22667
Tssr22668 2 12301996 to 12302005 9 - TSS region transcription start site region 22668
Mindy3 2 12347263 to 12419470 72207 - protein coding gene MINDY lysine 48 deubiquitinase 3
Gm37289 2 12357095 to 12358496 1401 - unclassified gene predicted gene, 37289
Gm37255 2 12372212 to 12375271 3059 - unclassified gene predicted gene, 37255
Gm38014 2 12389872 to 12392483 2611 - unclassified gene predicted gene, 38014
Cpgi11210 2 12418613 to 12419539 926 CpG island CpG island 11210
Tssr22669 2 12419387 to 12419399 12 - TSS region transcription start site region 22669
Tssr22670 2 12419401 to 12419419 18 - TSS region transcription start site region 22670
Tssr22671 2 12419427 to 12419448 21 - TSS region transcription start site region 22671
Tssr22672 2 12419456 to 12419474 18 - TSS region transcription start site region 22672
Gm13321 2 12421627 to 12422026 399 - pseudogene predicted gene 13321
D2Mit429 2 12474345 to 12474466 121 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 429
Gm37565 2 12697417 to 12706853 9436 + lincRNA gene predicted gene, 37565
Tssr22673 2 12877781 to 12877786 5 - TSS region transcription start site region 22673
Cpgi11211 2 12924007 to 12924274 267 CpG island CpG island 11211
Pter 2 12924041 to 13003455 79414 + protein coding gene phosphotriesterase related
Tssr16180 2 12924053 to 12924113 60 + TSS region transcription start site region 16180
Tssr16181 2 12924120 to 12924134 14 + TSS region transcription start site region 16181
Tssr16182 2 12924136 to 12924143 7 + TSS region transcription start site region 16182
Tssr16183 2 12938679 to 12938683 4 + TSS region transcription start site region 16183
Tssr22674 2 12979609 to 12979610 1 - TSS region transcription start site region 22674
C1ql3 2 13003457 to 13011806 8349 - protein coding gene C1q-like 3
Gm37824 2 13004365 to 13007600 3235 + unclassified gene predicted gene, 37824
Gm37811 2 13009886 to 13012486 2600 + unclassified gene predicted gene, 37811
Cpgi11212 2 13009906 to 13011728 1822 CpG island CpG island 11212
Tssr22675 2 13010815 to 13010864 49 - TSS region transcription start site region 22675
Tssr22676 2 13010899 to 13010919 20 - TSS region transcription start site region 22676
Tssr22677 2 13011039 to 13011048 9 - TSS region transcription start site region 22677
Tssr22678 2 13011074 to 13011107 33 - TSS region transcription start site region 22678
Tssr22679 2 13011566 to 13011577 11 - TSS region transcription start site region 22679
Tssr22680 2 13011600 to 13011629 29 - TSS region transcription start site region 22680
Tssr22681 2 13011630 to 13011657 27 - TSS region transcription start site region 22681
Tssr22682 2 13011672 to 13011686 14 - TSS region transcription start site region 22682
Tssr22683 2 13011756 to 13011778 22 - TSS region transcription start site region 22683
Gm37356 2 13012624 to 13014236 1612 + unclassified gene predicted gene, 37356
Gm37742 2 13036126 to 13040104 3978 + unclassified gene predicted gene, 37742
1700016C23Rik 2 13042600 to 13045492 2892 unclassified gene RIKEN cDNA 1700016C23 gene
Rsu1 2 13076967 to 13271416 194449 - protein coding gene Ras suppressor protein 1
Gm38156 2 13116176 to 13118435 2259 - unclassified gene predicted gene, 38156
D2Mit427 2 13122624 to 13122742 118 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 427
9330179A15Rik 2 13149538 to 13149961 423 unclassified gene RIKEN cDNA 9330179A15 gene
Tssr22684 2 13156694 to 13156727 33 - TSS region transcription start site region 22684
Gm37780 2 13161751 to 13163623 1872 - unclassified gene predicted gene, 37780
Tssr22685 2 13219056 to 13219071 15 - TSS region transcription start site region 22685
Tssr22686 2 13223333 to 13223334 1 - TSS region transcription start site region 22686
Tssr22687 2 13224351 to 13224370 19 - TSS region transcription start site region 22687
Tssr22688 2 13224707 to 13224723 16 - TSS region transcription start site region 22688
Gm27540 2 13226828 to 13227014 186 + unclassified non-coding RNA gene predicted gene, 27540
Gm37160 2 13238939 to 13240627 1688 - unclassified gene predicted gene, 37160
Tssr22689 2 13257911 to 13257917 6 - TSS region transcription start site region 22689
Cpgi11213 2 13271170 to 13271843 673 CpG island CpG island 11213
Tssr22690 2 13271268 to 13271348 80 - TSS region transcription start site region 22690
Tssr22691 2 13271419 to 13271437 18 - TSS region transcription start site region 22691
Tssr22692 2 13271438 to 13271446 8 - TSS region transcription start site region 22692
Gm13270 2 13271540 to 13310119 38579 + lncRNA gene predicted gene 13270
Tssr16184 2 13271579 to 13271630 51 + TSS region transcription start site region 16184
Cubn 2 13276338 to 13491813 215475 - protein coding gene cubilin (intrinsic factor-cobalamin receptor)
Tssr22693 2 13283265 to 13283273 8 - TSS region transcription start site region 22693
Tssr22694 2 13410800 to 13410805 5 - TSS region transcription start site region 22694
Tssr16185 2 13411015 to 13411019 4 + TSS region transcription start site region 16185
Tssr22695 2 13413584 to 13413597 13 - TSS region transcription start site region 22695
Tssr22696 2 13424752 to 13424763 11 - TSS region transcription start site region 22696
Tssr22697 2 13424768 to 13424785 17 - TSS region transcription start site region 22697
Tssr16186 2 13481070 to 13481101 31 + TSS region transcription start site region 16186
Tssr22698 2 13491847 to 13491890 43 - TSS region transcription start site region 22698
Tssr22699 2 13491891 to 13491896 5 - TSS region transcription start site region 22699
Tssr22700 2 13491900 to 13491940 40 - TSS region transcription start site region 22700
Tssr22701 2 13491953 to 13491958 5 - TSS region transcription start site region 22701
Tssr22702 2 13491960 to 13491974 14 - TSS region transcription start site region 22702
Tssr22703 2 13491977 to 13492025 48 - TSS region transcription start site region 22703
Tssr22704 2 13492034 to 13492046 12 - TSS region transcription start site region 22704
Tssr22705 2 13493651 to 13493657 6 - TSS region transcription start site region 22705
Tssr22706 2 13493660 to 13493670 10 - TSS region transcription start site region 22706
Tssr22707 2 13493674 to 13493690 16 - TSS region transcription start site region 22707
Tssr22708 2 13493695 to 13493705 10 - TSS region transcription start site region 22708
Trdmt1 2 13509014 to 13544668 35654 - protein coding gene tRNA aspartic acid methyltransferase 1
Cpgi11214 2 13544420 to 13544795 375 CpG island CpG island 11214
Tssr22709 2 13544651 to 13544673 22 - TSS region transcription start site region 22709
Gm9875 2 13558323 to 13571736 13413 + lncRNA gene predicted gene 9875
Tssr22710 2 13558505 to 13558512 7 - TSS region transcription start site region 22710
D2Mit149.1 2 13571471 to 13571680 209 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 149.1
D2Mit149 2 13571654 to 13571852 198 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 149
Tssr22711 2 13572015 to 13572019 4 - TSS region transcription start site region 22711
Tssr22712 2 13573557 to 13573565 8 - TSS region transcription start site region 22712
Tssr16187 2 13573680 to 13573710 30 + TSS region transcription start site region 16187
Cpgi11215 2 13573898 to 13575329 1431 CpG island CpG island 11215
Tssr16188 2 13574006 to 13574028 22 + TSS region transcription start site region 16188
Tssr16189 2 13574032 to 13574075 43 + TSS region transcription start site region 16189
Tssr16190 2 13574094 to 13574114 20 + TSS region transcription start site region 16190
Tssr16191 2 13574299 to 13574318 19 + TSS region transcription start site region 16191
Vim 2 13574311 to 13582826 8515 + protein coding gene vimentin
Tssr22713 2 13574552 to 13574569 17 - TSS region transcription start site region 22713
Tssr22714 2 13574966 to 13575029 63 - TSS region transcription start site region 22714