Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:112381355-113467096

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Katnbl1 2 112379211 to 112414237 35026 + protein coding gene katanin p80 subunit B like 1
Tssr19380 2 112383848 to 112383852 4 + TSS region transcription start site region 19380
Gm13940 2 112389197 to 112389497 300 - pseudogene predicted gene 13940
D2Ertd127e 2 112394659 to 112394875 216 DNA segment DNA segment, Chr 2, ERATO Doi 127, expressed
Tssr19381 2 112446913 to 112446923 10 + TSS region transcription start site region 19381
Cpgi12047 2 112454676 to 112455506 830 CpG island CpG island 12047
Tssr25631 2 112454900 to 112454933 33 - TSS region transcription start site region 25631
Emc7 2 112455014 to 112469204 14190 + protein coding gene ER membrane protein complex subunit 7
Tssr19382 2 112455022 to 112455063 41 + TSS region transcription start site region 19382
n-R5s202 2 112469253 to 112469366 113 - rRNA gene nuclear encoded rRNA 5S 202
Chrm5 2 112479171 to 112480769 1598 - protein coding gene cholinergic receptor, muscarinic 5
Cpgi12048 2 112492531 to 112493596 1065 CpG island CpG island 12048
Aven 2 112492885 to 112631253 138368 + protein coding gene apoptosis, caspase activation inhibitor
Tssr19383 2 112492894 to 112492905 11 + TSS region transcription start site region 19383
Tssr19384 2 112492926 to 112493005 79 + TSS region transcription start site region 19384
Tssr25632 2 112493252 to 112493280 28 - TSS region transcription start site region 25632
Tssr19385 2 112498168 to 112498171 3 + TSS region transcription start site region 19385
Gm22676 2 112500869 to 112500997 128 + snoRNA gene predicted gene, 22676
Tssr19386 2 112506978 to 112506984 6 + TSS region transcription start site region 19386
Tssr19387 2 112507101 to 112507112 11 + TSS region transcription start site region 19387
Tssr19388 2 112507114 to 112507136 22 + TSS region transcription start site region 19388
Tssr19389 2 112507186 to 112507198 12 + TSS region transcription start site region 19389
Tssr25633 2 112510226 to 112510236 10 - TSS region transcription start site region 25633
Tssr25634 2 112561698 to 112561704 6 - TSS region transcription start site region 25634
Tssr19390 2 112571441 to 112571462 21 + TSS region transcription start site region 19390
Tssr597 2 112587413 to 112587415 2 + TSS region transcription start site region 597
Gm44374 2 112614030 to 112614169 139 + miRNA gene predicted gene, 44374
Tssr19391 2 112618386 to 112618406 20 + TSS region transcription start site region 19391
Tssr19392 2 112618411 to 112618436 25 + TSS region transcription start site region 19392
Tssr19393 2 112618442 to 112618447 5 + TSS region transcription start site region 19393
Tssr19394 2 112618994 to 112619001 7 + TSS region transcription start site region 19394
Tssr19395 2 112619012 to 112619022 10 + TSS region transcription start site region 19395
Ryr3 2 112631355 to 113217096 585741 - protein coding gene ryanodine receptor 3
Tssr25635 2 112678262 to 112678275 13 - TSS region transcription start site region 25635
Tssr19396 2 112712829 to 112712832 3 + TSS region transcription start site region 19396
D2Mit222 2 112728435 to 112728575 140 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 222
D2Mit352.1 2 112887950 to 112888125 175 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 352.1
D2Mit352 2 112888098 to 112888218 120 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 352
Tssr19397 2 112943516 to 112943519 3 + TSS region transcription start site region 19397
D2Dcr59 2 113050276 to 113050371 95 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 59
D2Mit481 2 113172764 to 113172875 111 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 481
Cpgi12049 2 113216439 to 113217658 1219 CpG island CpG island 12049
Tssr25636 2 113217026 to 113217039 13 - TSS region transcription start site region 25636
Tssr25637 2 113217052 to 113217094 42 - TSS region transcription start site region 25637
Tssr19398 2 113285717 to 113285719 2 + TSS region transcription start site region 19398
Tssr19399 2 113285731 to 113285749 18 + TSS region transcription start site region 19399
Tmco5b 2 113285732 to 113297190 11458 + protein coding gene transmembrane and coiled-coil domains 5B
Gm26505 2 113288273 to 113288438 165 + snRNA gene predicted gene, 26505
D2Mit390 2 113326334 to 113326443 109 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 390
Cpgi12050 2 113327286 to 113328008 722 CpG island CpG island 12050
Tssr19400 2 113327711 to 113327753 42 + TSS region transcription start site region 19400
Fmn1 2 113327736 to 113716767 389031 + protein coding gene formin 1
Tssr19401 2 113327756 to 113327781 25 + TSS region transcription start site region 19401
Tssr25638 2 113348010 to 113348022 12 - TSS region transcription start site region 25638
A930030B21Rik 2 113352587 to 113352911 324 unclassified gene RIKEN cDNA A930030B21 gene
Tssr19402 2 113364545 to 113364570 25 + TSS region transcription start site region 19402
Tssr19403 2 113365494 to 113365506 12 + TSS region transcription start site region 19403
Tssr19404 2 113365527 to 113365539 12 + TSS region transcription start site region 19404
Gm13967 2 113384681 to 113385199 518 + pseudogene predicted gene 13967
Gm13963 2 113387107 to 113441094 53987 - antisense lncRNA gene predicted gene 13963
Gm13965 2 113400459 to 113410250 9791 + unclassified non-coding RNA gene predicted gene 13965
Tssr19405 2 113405103 to 113405112 9 + TSS region transcription start site region 19405
Tssr19406 2 113405114 to 113405127 13 + TSS region transcription start site region 19406
Tssr19407 2 113405131 to 113405157 26 + TSS region transcription start site region 19407
Tssr19408 2 113405174 to 113405192 18 + TSS region transcription start site region 19408
Tssr19409 2 113405197 to 113405201 4 + TSS region transcription start site region 19409
Tssr19410 2 113405216 to 113405225 9 + TSS region transcription start site region 19410
Tssr19411 2 113439780 to 113439781 1 + TSS region transcription start site region 19411
Tssr19412 2 113440052 to 113440055 3 + TSS region transcription start site region 19412
Gm13966 2 113440681 to 113442304 1623 - antisense lncRNA gene predicted gene 13966
Tssr19413 2 113440853 to 113440891 38 + TSS region transcription start site region 19413
Tssr19414 2 113440896 to 113440952 56 + TSS region transcription start site region 19414
Tssr19415 2 113440978 to 113441000 22 + TSS region transcription start site region 19415
Tssr19416 2 113441042 to 113441058 16 + TSS region transcription start site region 19416
Tssr19417 2 113441068 to 113441079 11 + TSS region transcription start site region 19417
Tssr19418 2 113442334 to 113442350 16 + TSS region transcription start site region 19418
D2Mit483 2 113445055 to 113445178 123 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 483
D2Mit187 2 113465716 to 113465865 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 187