Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:10495114-12955130

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300 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sfmbt2 2 10370510 to 10595253 224743 + protein coding gene Scm-like with four mbt domains 2
Gm25158 2 10495079 to 10495199 120 + miRNA gene predicted gene, 25158
Mir467a-8 2 10495980 to 10496062 82 + miRNA gene microRNA 467a-8
Mir466b-7 2 10496268 to 10496355 87 + miRNA gene microRNA 466b-7
Mir669p-2 2 10496497 to 10496583 86 + miRNA gene microRNA 669p-2
Gm24028 2 10496791 to 10496914 123 + miRNA gene predicted gene, 24028
Gm22626 2 10497352 to 10497477 125 + miRNA gene predicted gene, 22626
Gm22166 2 10497548 to 10497668 120 + miRNA gene predicted gene, 22166
Mir467a-9 2 10498393 to 10498475 82 + miRNA gene microRNA 467a-9
Mir466b-2 2 10498685 to 10498766 81 + miRNA gene microRNA 466b-2
Mir669a-10 2 10498911 to 10498997 86 + miRNA gene microRNA 669a-10
Gm26156 2 10499204 to 10499326 122 + miRNA gene predicted gene, 26156
Gm23571 2 10499763 to 10499889 126 + miRNA gene predicted gene, 23571
Gm25316 2 10499966 to 10500083 117 + miRNA gene predicted gene, 25316
Gm25022 2 10500822 to 10500904 82 + miRNA gene predicted gene, 25022
Gm25943 2 10501109 to 10501198 89 + miRNA gene predicted gene, 25943
Mir669a-11 2 10501339 to 10501425 86 + miRNA gene microRNA 669a-11
Gm23988 2 10501633 to 10501754 121 + miRNA gene predicted gene, 23988
Gm25673 2 10502191 to 10502317 126 + miRNA gene predicted gene, 25673
Gm25753 2 10502391 to 10502511 120 + miRNA gene predicted gene, 25753
Mir467a-10 2 10503273 to 10503355 82 + miRNA gene microRNA 467a-10
Mir466b-3 2 10503565 to 10503645 80 + miRNA gene microRNA 466b-3
Mir669a-12 2 10503791 to 10503877 86 + miRNA gene microRNA 669a-12
Gm26398 2 10504647 to 10504773 126 + miRNA gene predicted gene, 26398
Mir467e 2 10505721 to 10505807 86 + miRNA gene microRNA 467e
Mir466p 2 10506006 to 10506094 88 + miRNA gene microRNA 466p
Gm22051 2 10506555 to 10506681 126 + miRNA gene predicted gene, 22051
Gm22678 2 10506755 to 10506855 100 + miRNA gene predicted gene, 22678
Mir467d 2 10507630 to 10507714 84 + miRNA gene microRNA 467d
Mir466 2 10507918 to 10507990 72 + miRNA gene microRNA 466
Gm22091 2 10508453 to 10508579 126 + miRNA gene predicted gene, 22091
Mir297c 2 10509016 to 10509113 97 + miRNA gene microRNA 297c
Mir669c 2 10509296 to 10509404 108 + miRNA gene microRNA 669c
Gm24342 2 10509584 to 10509687 103 + miRNA gene predicted gene, 24342
Gm25263 2 10509885 to 10509984 99 + miRNA gene predicted gene, 25263
Mir669a-2 2 10510164 to 10510260 96 + miRNA gene microRNA 669a-2
Gm22239 2 10510461 to 10510563 102 + miRNA gene predicted gene, 22239
Gm22925 2 10510791 to 10510892 101 + miRNA gene predicted gene, 22925
Gm23542 2 10511370 to 10511465 95 + miRNA gene predicted gene, 23542
Mir297b 2 10511667 to 10511775 108 + miRNA gene microRNA 297b
Mir466d 2 10511967 to 10512062 95 + miRNA gene microRNA 466d
Gm26092 2 10512203 to 10512299 96 + miRNA gene predicted gene, 26092
Mir669m-1 2 10512790 to 10512887 97 + miRNA gene microRNA 669m-1
Mir669m-2 2 10513434 to 10513531 97 + miRNA gene microRNA 669m-2
Mir466n 2 10513741 to 10513834 93 + miRNA gene microRNA 466n
Mir669o 2 10514300 to 10514395 95 + miRNA gene microRNA 669o
Mir466g 2 10514595 to 10514674 79 + miRNA gene microRNA 466g
Mir466h 2 10514891 to 10514971 80 + miRNA gene microRNA 466h
Mir297a-3 2 10515820 to 10515921 101 + miRNA gene microRNA 297a-3
Mir466l 2 10516097 to 10516217 120 + miRNA gene microRNA 466l
Mir297a-4 2 10517067 to 10517164 97 + miRNA gene microRNA 297a-4
Gm24806 2 10517337 to 10517426 89 + miRNA gene predicted gene, 24806
Mir669i 2 10517604 to 10517730 126 + miRNA gene microRNA 669i
Mir669h 2 10518155 to 10518279 124 + miRNA gene microRNA 669h
Tssr16093 2 10523311 to 10523321 10 + TSS region transcription start site region 16093
Tssr16094 2 10593177 to 10593191 14 + TSS region transcription start site region 16094
Tssr16095 2 10594861 to 10594869 8 + TSS region transcription start site region 16095
Gm10852 2 10715025 to 10717670 2645 protein coding gene predicted gene 10852
Tssr16096 2 10803064 to 10803083 19 + TSS region transcription start site region 16096
Gm31729 2 10825745 to 10828322 2577 + lncRNA gene predicted gene, 31729
Tssr16097 2 10893275 to 10893283 8 + TSS region transcription start site region 16097
Gm18547 2 10893711 to 10894520 809 + pseudogene predicted gene, 18547
Gm13265 2 10898671 to 10899091 420 - pseudogene predicted gene 13265
Gm13263 2 10959127 to 10959964 837 - pseudogene predicted gene 13263
D2Mit201 2 11001232 to 11001378 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 201
Gm37343 2 11013808 to 11013918 110 - unclassified gene predicted gene, 37343
Gm23877 2 11014762 to 11014890 128 - snoRNA gene predicted gene, 23877
Gm13264 2 11036874 to 11060129 23255 + lincRNA gene predicted gene 13264
Gm26478 2 11087781 to 11087913 132 - snRNA gene predicted gene, 26478
Gm13297 2 11090844 to 11091763 919 + pseudogene predicted gene 13297
Gm13294 2 11098933 to 11100262 1329 - pseudogene predicted gene 13294
Cpgi11197 2 11099216 to 11099494 278 CpG island CpG island 11197
Tssr22602 2 11159773 to 11159779 6 - TSS region transcription start site region 22602
Tssr22603 2 11160791 to 11160807 16 - TSS region transcription start site region 22603
Tssr22604 2 11170067 to 11170087 20 - TSS region transcription start site region 22604
Tssr16098 2 11171881 to 11171915 34 + TSS region transcription start site region 16098
Cpgi11198 2 11172012 to 11172667 655 CpG island CpG island 11198
Tssr16099 2 11172033 to 11172053 20 + TSS region transcription start site region 16099
Tssr16100 2 11172054 to 11172072 18 + TSS region transcription start site region 16100
Tssr16101 2 11172080 to 11172140 60 + TSS region transcription start site region 16101
Prkcq 2 11172108 to 11301222 129114 + protein coding gene protein kinase C, theta
Tssr402 2 11172140 to 11172145 5 + TSS region transcription start site region 402
Tssr16102 2 11172161 to 11172172 11 + TSS region transcription start site region 16102
Tssr16103 2 11172182 to 11172199 17 + TSS region transcription start site region 16103
Tssr16104 2 11172216 to 11172237 21 + TSS region transcription start site region 16104
Tssr16105 2 11172288 to 11172302 14 + TSS region transcription start site region 16105
Tssr16106 2 11172309 to 11172327 18 + TSS region transcription start site region 16106
Tssr16107 2 11172329 to 11172350 21 + TSS region transcription start site region 16107
Tssr16108 2 11172356 to 11172367 11 + TSS region transcription start site region 16108
Tssr403 2 11172382 to 11172385 3 + TSS region transcription start site region 403
Tssr16109 2 11172388 to 11172419 31 + TSS region transcription start site region 16109
Tssr16110 2 11175863 to 11175873 10 + TSS region transcription start site region 16110
Gm36932 2 11181012 to 11181940 928 + unclassified gene predicted gene, 36932
Gm37520 2 11190641 to 11193312 2671 - unclassified gene predicted gene, 37520
Tssr16111 2 11206025 to 11206035 10 + TSS region transcription start site region 16111
Tssr16112 2 11206109 to 11206112 3 + TSS region transcription start site region 16112
Tssr22605 2 11212008 to 11212025 17 - TSS region transcription start site region 22605
Tssr16113 2 11218449 to 11218462 13 + TSS region transcription start site region 16113
Tssr16114 2 11218493 to 11218504 11 + TSS region transcription start site region 16114
Gm37766 2 11227297 to 11229863 2566 + unclassified gene predicted gene, 37766
Tssr16115 2 11250442 to 11250449 7 + TSS region transcription start site region 16115
Tssr16116 2 11250462 to 11250474 12 + TSS region transcription start site region 16116
Tssr16117 2 11250475 to 11250485 10 + TSS region transcription start site region 16117
Tssr16118 2 11250487 to 11250498 11 + TSS region transcription start site region 16118
Tssr22606 2 11259515 to 11259521 6 - TSS region transcription start site region 22606
Cpgi11199 2 11290137 to 11290698 561 CpG island CpG island 11199
Gm38171 2 11315372 to 11319874 4502 - lincRNA gene predicted gene, 38171
Gm31902 2 11319591 to 11334161 14570 - lncRNA gene predicted gene, 31902
Tssr22607 2 11332551 to 11332567 16 - TSS region transcription start site region 22607
Tssr22608 2 11332571 to 11332587 16 - TSS region transcription start site region 22608
Tssr404 2 11332593 to 11332616 23 - TSS region transcription start site region 404
Tssr405 2 11332788 to 11332802 14 + TSS region transcription start site region 405
Tssr406 2 11332811 to 11332829 18 + TSS region transcription start site region 406
Gm37851 2 11332825 to 11333713 888 + unclassified gene predicted gene, 37851
Tssr22609 2 11333375 to 11333398 23 - TSS region transcription start site region 22609
8030442B05Rik 2 11338366 to 11398500 60134 - lincRNA gene RIKEN cDNA 8030442B05 gene
Tssr16119 2 11339325 to 11339341 16 + TSS region transcription start site region 16119
Tssr16120 2 11339461 to 11339501 40 + TSS region transcription start site region 16120
Gm13293 2 11339489 to 11344106 4617 + lincRNA gene predicted gene 13293
Tssr16121 2 11339505 to 11339526 21 + TSS region transcription start site region 16121
Tssr16122 2 11339541 to 11339546 5 + TSS region transcription start site region 16122
Tssr16123 2 11339731 to 11339750 19 + TSS region transcription start site region 16123
Gm37730 2 11365241 to 11367451 2210 - unclassified gene predicted gene, 37730
Tssr22610 2 11375039 to 11375082 43 - TSS region transcription start site region 22610
4933403L11Rik 2 11383787 to 11384907 1120 - unclassified gene RIKEN cDNA 4933403L11 gene
Gm13291 2 11385003 to 11387064 2061 + lincRNA gene predicted gene 13291
Tssr22611 2 11398495 to 11398517 22 - TSS region transcription start site region 22611
Tssr22612 2 11398525 to 11398538 13 - TSS region transcription start site region 22612
Gm13292 2 11409031 to 11410030 999 - pseudogene predicted gene 13292
Gm13296 2 11420224 to 11421220 996 + pseudogene predicted gene 13296
Gm31990 2 11422527 to 11447447 24920 - lncRNA gene predicted gene, 31990
Tssr22613 2 11425702 to 11425705 3 - TSS region transcription start site region 22613
Pfkfb3 2 11471430 to 11554071 82641 - protein coding gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
Tssr22614 2 11473753 to 11473796 43 - TSS region transcription start site region 22614
Tssr22615 2 11473892 to 11473938 46 - TSS region transcription start site region 22615
Tssr22616 2 11473964 to 11473980 16 - TSS region transcription start site region 22616
Tssr22617 2 11473985 to 11473996 11 - TSS region transcription start site region 22617
Tssr22618 2 11474036 to 11474044 8 - TSS region transcription start site region 22618
Tssr22619 2 11474206 to 11474219 13 - TSS region transcription start site region 22619
Tssr22620 2 11475827 to 11475829 2 - TSS region transcription start site region 22620
Tssr22621 2 11480349 to 11480362 13 - TSS region transcription start site region 22621
Tssr22622 2 11484772 to 11484791 19 - TSS region transcription start site region 22622
Tssr22623 2 11492094 to 11492108 14 - TSS region transcription start site region 22623
Tssr22624 2 11492611 to 11492648 37 - TSS region transcription start site region 22624
Tssr22625 2 11492652 to 11492663 11 - TSS region transcription start site region 22625
Tssr22626 2 11493939 to 11493969 30 - TSS region transcription start site region 22626
Tssr22627 2 11494009 to 11494020 11 - TSS region transcription start site region 22627
Tssr22628 2 11498380 to 11498400 20 - TSS region transcription start site region 22628
Tssr22629 2 11498401 to 11498414 13 - TSS region transcription start site region 22629
Tssr22630 2 11498443 to 11498454 11 - TSS region transcription start site region 22630
Tssr22631 2 11499561 to 11499565 4 - TSS region transcription start site region 22631
Tssr22632 2 11499913 to 11499927 14 - TSS region transcription start site region 22632
Cpgi11200 2 11501067 to 11502634 1567 CpG island CpG island 11200
Tssr22633 2 11501717 to 11501728 11 - TSS region transcription start site region 22633
Tssr22634 2 11502032 to 11502049 17 - TSS region transcription start site region 22634
Tssr22635 2 11502050 to 11502061 11 - TSS region transcription start site region 22635
Tssr22636 2 11502069 to 11502080 11 - TSS region transcription start site region 22636
Tssr22637 2 11502092 to 11502126 34 - TSS region transcription start site region 22637
Cpgi11201 2 11502837 to 11503446 609 CpG island CpG island 11201
Tssr22638 2 11513174 to 11513196 22 - TSS region transcription start site region 22638
Tssr22639 2 11513212 to 11513229 17 - TSS region transcription start site region 22639
Gm10851 2 11521524 to 11529986 8462 + antisense lncRNA gene predicted gene 10851
Tssr16124 2 11521700 to 11521714 14 + TSS region transcription start site region 16124
Tssr407 2 11522026 to 11522048 22 + TSS region transcription start site region 407
Tssr16125 2 11522076 to 11522095 19 + TSS region transcription start site region 16125
D2Mit357 2 11523588 to 11523712 124 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 357
Gm37975 2 11532596 to 11534694 2098 - unclassified gene predicted gene, 37975
Cpgi11202 2 11535333 to 11535874 541 CpG island CpG island 11202
Tssr22640 2 11535519 to 11535557 38 - TSS region transcription start site region 22640
Tssr16126 2 11535710 to 11535721 11 + TSS region transcription start site region 16126
Cpgi11203 2 11553210 to 11554216 1006 CpG island CpG island 11203
Tssr22641 2 11553893 to 11553961 68 - TSS region transcription start site region 22641
Tssr16127 2 11554023 to 11554040 17 + TSS region transcription start site region 16127
Cpgi11204 2 11563375 to 11563534 159 CpG island CpG island 11204
Rbm17 2 11585439 to 11603199 17760 - protein coding gene RNA binding motif protein 17
Tssr22642 2 11596716 to 11596745 29 - TSS region transcription start site region 22642
Cpgi11205 2 11602496 to 11603442 946 CpG island CpG island 11205
Tssr22643 2 11603192 to 11603268 76 - TSS region transcription start site region 22643
Tssr22644 2 11605035 to 11605038 3 - TSS region transcription start site region 22644
Gm13260 2 11607417 to 11608537 1120 - pseudogene predicted gene 13260
Tssr22645 2 11620497 to 11620523 26 - TSS region transcription start site region 22645
Gm17490 2 11625606 to 11626264 658 - protein coding gene predicted gene, 17490
Tssr16128 2 11626173 to 11626202 29 + TSS region transcription start site region 16128
Tssr22646 2 11634903 to 11634908 5 - TSS region transcription start site region 22646
Tssr22647 2 11635093 to 11635097 4 - TSS region transcription start site region 22647
Tssr22648 2 11636208 to 11636224 16 - TSS region transcription start site region 22648
Tssr22649 2 11637184 to 11637205 21 - TSS region transcription start site region 22649
Tssr22650 2 11637252 to 11637285 33 - TSS region transcription start site region 22650
Tssr16129 2 11642786 to 11642798 12 + TSS region transcription start site region 16129
Tssr16130 2 11642799 to 11642812 13 + TSS region transcription start site region 16130
Il2ra 2 11642807 to 11693193 50386 + protein coding gene interleukin 2 receptor, alpha chain
Tssr16131 2 11642842 to 11642863 21 + TSS region transcription start site region 16131
Tssr16132 2 11645494 to 11645506 12 + TSS region transcription start site region 16132
Tssr16133 2 11645730 to 11645770 40 + TSS region transcription start site region 16133
Tssr22651 2 11646541 to 11646546 5 - TSS region transcription start site region 22651
Tssr22652 2 11646580 to 11646585 5 - TSS region transcription start site region 22652
Tssr22653 2 11651496 to 11651500 4 - TSS region transcription start site region 22653
Tssr16134 2 11653556 to 11653561 5 + TSS region transcription start site region 16134
Tssr16135 2 11653588 to 11653598 10 + TSS region transcription start site region 16135
Tssr16136 2 11654035 to 11654046 11 + TSS region transcription start site region 16136