Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:8718671-8918712

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177 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc3a2 19 8706882 to 8723369 16487 - protein coding gene solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2
Cpgi10568 19 8722853 to 8723729 876 CpG island CpG island 10568
Tssr154799 19 8722944 to 8722962 18 + TSS region transcription start site region 154799
Tssr5432 19 8722972 to 8722986 14 + TSS region transcription start site region 5432
Tssr158045 19 8723125 to 8723135 10 - TSS region transcription start site region 158045
Tssr158046 19 8723166 to 8723287 121 - TSS region transcription start site region 158046
Tssr158047 19 8723356 to 8723378 22 - TSS region transcription start site region 158047
Tssr154800 19 8723478 to 8723514 36 + TSS region transcription start site region 154800
Snhg1 19 8723487 to 8726326 2839 + lncRNA gene small nucleolar RNA host gene 1
Gm25855 19 8723993 to 8724064 71 + snoRNA gene predicted gene, 25855
Tssr154801 19 8723993 to 8723997 4 + TSS region transcription start site region 154801
Tssr154802 19 8724113 to 8724143 30 + TSS region transcription start site region 154802
Gm25894 19 8724251 to 8724325 74 + snoRNA gene predicted gene, 25894
Tssr5433 19 8724383 to 8724412 29 + TSS region transcription start site region 5433
Gm24452 19 8724531 to 8724602 71 + snoRNA gene predicted gene, 24452
Gm24453 19 8724868 to 8724943 75 + snoRNA gene predicted gene, 24453
Gm22744 19 8725092 to 8725156 64 + snoRNA gene predicted gene, 22744
Tssr154803 19 8725094 to 8725097 3 + TSS region transcription start site region 154803
Gm22680 19 8725341 to 8725409 68 + snoRNA gene predicted gene, 22680
Gm23246 19 8725594 to 8725660 66 + snoRNA gene predicted gene, 23246
Tssr154804 19 8725860 to 8725874 14 + TSS region transcription start site region 154804
Snord22 19 8725866 to 8725991 125 + snoRNA gene small nucleolar RNA, C/D box 22
Cpgi10569 19 8735664 to 8736291 627 CpG island CpG island 10569
Tssr154805 19 8735792 to 8735807 15 + TSS region transcription start site region 154805
Tssr154806 19 8735808 to 8735864 56 + TSS region transcription start site region 154806
Wdr74 19 8735827 to 8740624 4797 + protein coding gene WD repeat domain 74
Gm45736 19 8735841 to 8741223 5382 + protein coding gene predicted gene 45736
Tssr158048 19 8740571 to 8740579 8 - TSS region transcription start site region 158048
Tssr154807 19 8740702 to 8740707 5 + TSS region transcription start site region 154807
Tssr154808 19 8740712 to 8740723 11 + TSS region transcription start site region 154808
1700092M07Rik 19 8740718 to 8741225 507 + protein coding gene RIKEN cDNA 1700092M07 gene
Tssr154809 19 8740739 to 8740767 28 + TSS region transcription start site region 154809
Cpgi10570 19 8741032 to 8742437 1405 CpG island CpG island 10570
Tssr154810 19 8741415 to 8741461 46 + TSS region transcription start site region 154810
Stx5a 19 8741424 to 8755642 14218 + protein coding gene syntaxin 5A
Tssr154811 19 8741473 to 8741503 30 + TSS region transcription start site region 154811
Tssr154812 19 8741794 to 8741811 17 + TSS region transcription start site region 154812
Tssr154813 19 8741815 to 8741865 50 + TSS region transcription start site region 154813
Mir6992 19 8742971 to 8743079 108 + miRNA gene microRNA 6992
1700023D09Rik 19 8754789 to 8756969 2180 - lncRNA gene RIKEN cDNA 1700023D09 gene
Cpgi10571 19 8756683 to 8757585 902 CpG island CpG island 10571
Tssr154814 19 8756723 to 8756744 21 + TSS region transcription start site region 154814
Tssr158049 19 8756898 to 8756913 15 - TSS region transcription start site region 158049
Tssr154815 19 8757079 to 8757093 14 + TSS region transcription start site region 154815
Tssr154816 19 8757099 to 8757126 27 + TSS region transcription start site region 154816
Nxf1 19 8757103 to 8770910 13807 + protein coding gene nuclear RNA export factor 1
Tssr154817 19 8757139 to 8757155 16 + TSS region transcription start site region 154817
Tssr154818 19 8757414 to 8757447 33 + TSS region transcription start site region 154818
Tssr154819 19 8765030 to 8765034 4 + TSS region transcription start site region 154819
Tssr154820 19 8766714 to 8766727 13 + TSS region transcription start site region 154820
Cpgi10572 19 8770849 to 8771449 600 CpG island CpG island 10572
Tssr154821 19 8770983 to 8771019 36 + TSS region transcription start site region 154821
Tmem223 19 8770996 to 8772475 1479 + protein coding gene transmembrane protein 223
Tssr154822 19 8771037 to 8771055 18 + TSS region transcription start site region 154822
Tssr154823 19 8771058 to 8771069 11 + TSS region transcription start site region 154823
Tmem179b 19 8772522 to 8774467 1945 - protein coding gene transmembrane protein 179B
Tssr158050 19 8773567 to 8773595 28 - TSS region transcription start site region 158050
Cpgi10573 19 8774233 to 8775322 1089 CpG island CpG island 10573
Taf6l 19 8774354 to 8786417 12063 - protein coding gene TATA-box binding protein associated factor 6 like
Tssr158051 19 8774431 to 8774470 39 - TSS region transcription start site region 158051
Tssr154824 19 8774484 to 8774496 12 + TSS region transcription start site region 154824
Gm2518 19 8774485 to 8776962 2477 + pseudogene predicted gene 2518
Cpgi10574 19 8785989 to 8786527 538 CpG island CpG island 10574
Tssr158052 19 8786245 to 8786270 25 - TSS region transcription start site region 158052
Tssr158053 19 8786272 to 8786297 25 - TSS region transcription start site region 158053
Tssr158054 19 8786408 to 8786422 14 - TSS region transcription start site region 158054
Tssr158055 19 8786431 to 8786440 9 - TSS region transcription start site region 158055
Polr2g 19 8793129 to 8798557 5428 - protein coding gene polymerase (RNA) II (DNA directed) polypeptide G
Cpgi10575 19 8798170 to 8798657 487 CpG island CpG island 10575
Tssr158056 19 8798385 to 8798395 10 - TSS region transcription start site region 158056
Tssr158057 19 8798404 to 8798418 14 - TSS region transcription start site region 158057
Tssr158058 19 8798421 to 8798432 11 - TSS region transcription start site region 158058
Tssr158059 19 8798465 to 8798470 5 - TSS region transcription start site region 158059
Tssr158060 19 8798495 to 8798565 70 - TSS region transcription start site region 158060
Tssr158061 19 8798571 to 8798593 22 - TSS region transcription start site region 158061
Cpgi10576 19 8802209 to 8802764 555 CpG island CpG island 10576
Tssr154825 19 8802486 to 8802521 35 + TSS region transcription start site region 154825
Zbtb3 19 8802530 to 8804854 2324 + protein coding gene zinc finger and BTB domain containing 3
Tssr154826 19 8802539 to 8802558 19 + TSS region transcription start site region 154826
Tssr154827 19 8802779 to 8802791 12 + TSS region transcription start site region 154827
Tssr154828 19 8802841 to 8802850 9 + TSS region transcription start site region 154828
Ttc9c 19 8809075 to 8819333 10258 - protein coding gene tetratricopeptide repeat domain 9C
Tssr158062 19 8809371 to 8809389 18 - TSS region transcription start site region 158062
Tssr158063 19 8818671 to 8818712 41 - TSS region transcription start site region 158063
Tssr158064 19 8818946 to 8819008 62 - TSS region transcription start site region 158064
Tssr158065 19 8819184 to 8819191 7 - TSS region transcription start site region 158065
Cpgi10577 19 8819217 to 8821069 1852 CpG island CpG island 10577
Tssr158066 19 8819236 to 8819251 15 - TSS region transcription start site region 158066
Tssr158067 19 8819278 to 8819301 23 - TSS region transcription start site region 158067
Tssr158068 19 8819314 to 8819350 36 - TSS region transcription start site region 158068
Hnrnpul2 19 8819401 to 8834142 14741 + protein coding gene heterogeneous nuclear ribonucleoprotein U-like 2
Tssr154829 19 8819560 to 8819574 14 + TSS region transcription start site region 154829
Tssr154830 19 8819582 to 8819608 26 + TSS region transcription start site region 154830
Tssr158069 19 8819757 to 8819790 33 - TSS region transcription start site region 158069
Tssr154831 19 8819966 to 8820034 68 + TSS region transcription start site region 154831
Tssr154832 19 8820049 to 8820060 11 + TSS region transcription start site region 154832
Tssr154833 19 8820065 to 8820076 11 + TSS region transcription start site region 154833
Tssr154834 19 8820128 to 8820139 11 + TSS region transcription start site region 154834
Tssr154835 19 8820216 to 8820249 33 + TSS region transcription start site region 154835
Tssr154836 19 8820253 to 8820314 61 + TSS region transcription start site region 154836
Tssr154837 19 8820670 to 8820681 11 + TSS region transcription start site region 154837
Tssr154838 19 8820693 to 8820704 11 + TSS region transcription start site region 154838
Tssr158070 19 8821310 to 8821331 21 - TSS region transcription start site region 158070
Tssr154839 19 8822855 to 8822870 15 + TSS region transcription start site region 154839
Tssr154840 19 8826702 to 8826724 22 + TSS region transcription start site region 154840
Tssr5434 19 8831224 to 8831227 3 + TSS region transcription start site region 5434
Tssr154841 19 8831585 to 8831597 12 + TSS region transcription start site region 154841
Tssr154842 19 8831695 to 8831700 5 + TSS region transcription start site region 154842
Gng3 19 8836929 to 8839246 2317 - protein coding gene guanine nucleotide binding protein (G protein), gamma 3
Cpgi10578 19 8837260 to 8837846 586 CpG island CpG island 10578
Tssr154843 19 8837445 to 8837558 113 + TSS region transcription start site region 154843
Bscl2 19 8837467 to 8848683 11216 + protein coding gene Berardinelli-Seip congenital lipodystrophy 2 (seipin)
Tssr154844 19 8837561 to 8837597 36 + TSS region transcription start site region 154844
Tssr154845 19 8837599 to 8837608 9 + TSS region transcription start site region 154845
Tssr154846 19 8837676 to 8837721 45 + TSS region transcription start site region 154846
Tssr158071 19 8838101 to 8838142 41 - TSS region transcription start site region 158071
Tssr158072 19 8838635 to 8838649 14 - TSS region transcription start site region 158072
Tssr154847 19 8838771 to 8838778 7 + TSS region transcription start site region 154847
Tssr5435 19 8839016 to 8839054 38 - TSS region transcription start site region 5435
Tssr5436 19 8839128 to 8839143 15 - TSS region transcription start site region 5436
Tssr158073 19 8839150 to 8839161 11 - TSS region transcription start site region 158073
Tssr158074 19 8839181 to 8839265 84 - TSS region transcription start site region 158074
Tssr154848 19 8839275 to 8839286 11 + TSS region transcription start site region 154848
Tssr5437 19 8839277 to 8839294 17 - TSS region transcription start site region 5437
Tssr154849 19 8839298 to 8839346 48 + TSS region transcription start site region 154849
Tssr5438 19 8839328 to 8839334 6 - TSS region transcription start site region 5438
Tssr154850 19 8839352 to 8839375 23 + TSS region transcription start site region 154850
Tssr154851 19 8839386 to 8839400 14 + TSS region transcription start site region 154851
Tssr5439 19 8839453 to 8839458 5 - TSS region transcription start site region 5439
Tssr154852 19 8839458 to 8839470 12 + TSS region transcription start site region 154852
Tssr154853 19 8839471 to 8839493 22 + TSS region transcription start site region 154853
Tssr154854 19 8839508 to 8839558 50 + TSS region transcription start site region 154854
Tssr154855 19 8839559 to 8839580 21 + TSS region transcription start site region 154855
Tssr154856 19 8839586 to 8839597 11 + TSS region transcription start site region 154856
Cpgi10579 19 8840470 to 8840759 289 CpG island CpG island 10579
Tssr154857 19 8840519 to 8840549 30 + TSS region transcription start site region 154857
Tssr154858 19 8840565 to 8840577 12 + TSS region transcription start site region 154858
Tssr154859 19 8841180 to 8841197 17 + TSS region transcription start site region 154859
Tssr154860 19 8841205 to 8841239 34 + TSS region transcription start site region 154860
Tssr154861 19 8842985 to 8843035 50 + TSS region transcription start site region 154861
Lrrn4cl 19 8850785 to 8853909 3124 + protein coding gene LRRN4 C-terminal like
Tssr154862 19 8850939 to 8850954 15 + TSS region transcription start site region 154862
D19Mit125 19 8853007 to 8853116 109 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology 125
Cpgi10580 19 8871385 to 8872126 741 CpG island CpG island 10580
Tssr154863 19 8871512 to 8871559 47 + TSS region transcription start site region 154863
Ubxn1 19 8871559 to 8875663 4104 + protein coding gene UBX domain protein 1
Tssr154864 19 8871560 to 8871598 38 + TSS region transcription start site region 154864
Tssr154865 19 8871605 to 8871616 11 + TSS region transcription start site region 154865
Tssr154866 19 8871617 to 8871628 11 + TSS region transcription start site region 154866
Tssr154867 19 8871636 to 8871686 50 + TSS region transcription start site region 154867
Tssr154868 19 8873559 to 8873584 25 + TSS region transcription start site region 154868
Uqcc3 19 8880016 to 8880933 917 - protein coding gene ubiquinol-cytochrome c reductase complex assembly factor 3
Cpgi10581 19 8880189 to 8880957 768 CpG island CpG island 10581
Tssr158075 19 8880832 to 8880854 22 - TSS region transcription start site region 158075
Tssr158076 19 8880883 to 8880928 45 - TSS region transcription start site region 158076
Tssr154869 19 8883848 to 8883861 13 + TSS region transcription start site region 154869
Tssr154870 19 8883865 to 8883909 44 + TSS region transcription start site region 154870
Lbhd1 19 8883878 to 8890759 6881 + protein coding gene LBH domain containing 1
Tssr154871 19 8883910 to 8883928 18 + TSS region transcription start site region 154871
Gm49403 19 8883930 to 8887258 3328 + protein coding gene predicted gene, 49403
5730408K05Rik 19 8888387 to 8888770 383 - lncRNA gene RIKEN cDNA 5730408K05 gene
Cpgi10582 19 8888388 to 8889343 955 CpG island CpG island 10582
Snora57 19 8888538 to 8888685 147 - snoRNA gene small nucleolar RNA, H/ACA box 57
Mir5136 19 8888699 to 8888774 75 - miRNA gene microRNA 5136
Tssr158077 19 8888769 to 8888770 1 - TSS region transcription start site region 158077
Tssr154872 19 8888880 to 8888925 45 + TSS region transcription start site region 154872
1810009A15Rik 19 8888883 to 8890759 1876 + protein coding gene RIKEN cDNA 1810009A15 gene
Gm49416 19 8888926 to 8895227 6301 + protein coding gene predicted gene, 49416
Tssr154873 19 8888946 to 8888953 7 + TSS region transcription start site region 154873
Cpgi10583 19 8892708 to 8893417 709 CpG island CpG island 10583
Ints5 19 8892987 to 8897890 4903 + protein coding gene integrator complex subunit 5
Tssr154874 19 8892998 to 8893052 54 + TSS region transcription start site region 154874
Cpgi10584 19 8897649 to 8898630 981 CpG island CpG island 10584
Ganab 19 8898090 to 8916663 18573 + protein coding gene alpha glucosidase 2 alpha neutral subunit
Tssr154875 19 8898095 to 8898122 27 + TSS region transcription start site region 154875
Tssr154876 19 8904986 to 8905015 29 + TSS region transcription start site region 154876
Tssr154877 19 8915756 to 8915783 27 + TSS region transcription start site region 154877