Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:56954690-57054713

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62 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Acer1 17 56953490 to 56982126 28636 - protein coding gene alkaline ceramidase 1
Gm49887 17 56958320 to 56959424 1104 + lincRNA gene predicted gene, 49887
D17Mit158.1 17 56976288 to 56976399 111 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 158.1
D17Mit158 17 56976380 to 56976491 111 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 158
D17Mit158.3 17 56976472 to 56976631 159 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 158.3
Tssr145356 17 56981320 to 56981329 9 + TSS region transcription start site region 145356
Tssr148846 17 56982104 to 56982118 14 - TSS region transcription start site region 148846
Tssr148847 17 56982120 to 56982161 41 - TSS region transcription start site region 148847
Gm33509 17 56988162 to 56990107 1945 - lncRNA gene predicted gene, 33509
Cpgi9384 17 56989763 to 56990819 1056 CpG island CpG island 9384
Tssr145357 17 56990260 to 56990267 7 + TSS region transcription start site region 145357
Tssr145358 17 56990284 to 56990330 46 + TSS region transcription start site region 145358
Clpp 17 56990305 to 56996188 5883 + protein coding gene caseinolytic mitochondrial matrix peptidase proteolytic subunit
Tssr145359 17 56990331 to 56990350 19 + TSS region transcription start site region 145359
Tssr145360 17 56990398 to 56990410 12 + TSS region transcription start site region 145360
Cpgi9385 17 56997122 to 56997916 794 CpG island CpG island 9385
Tssr145361 17 56997332 to 56997365 33 + TSS region transcription start site region 145361
Alkbh7 17 56997339 to 56999322 1983 + protein coding gene alkB homolog 7
Pspn 17 56999457 to 57000018 561 - protein coding gene persephin
Gtf2f1 17 57003405 to 57011288 7883 - protein coding gene general transcription factor IIF, polypeptide 1
Tssr148848 17 57004418 to 57004433 15 - TSS region transcription start site region 148848
Tssr148849 17 57004690 to 57004713 23 - TSS region transcription start site region 148849
Tssr148850 17 57004810 to 57004828 18 - TSS region transcription start site region 148850
Tssr148851 17 57004864 to 57004892 28 - TSS region transcription start site region 148851
Tssr148852 17 57005449 to 57005469 20 - TSS region transcription start site region 148852
Tssr148853 17 57007063 to 57007090 27 - TSS region transcription start site region 148853
Cpgi9386 17 57010841 to 57011967 1126 CpG island CpG island 9386
Tssr148854 17 57011221 to 57011232 11 - TSS region transcription start site region 148854
Tssr148855 17 57011247 to 57011259 12 - TSS region transcription start site region 148855
Tssr148856 17 57011271 to 57011326 55 - TSS region transcription start site region 148856
Tssr148857 17 57011390 to 57011405 15 - TSS region transcription start site region 148857
Tssr145362 17 57011580 to 57011596 16 + TSS region transcription start site region 145362
Tssr148858 17 57011645 to 57011649 4 - TSS region transcription start site region 148858
Tssr145363 17 57011759 to 57011794 35 + TSS region transcription start site region 145363
Gm17949 17 57012601 to 57019601 7000 + pseudogene predicted gene, 17949
Khsrp 17 57021049 to 57031507 10458 - protein coding gene KH-type splicing regulatory protein
Tssr148859 17 57021309 to 57021327 18 - TSS region transcription start site region 148859
Tssr148860 17 57021450 to 57021475 25 - TSS region transcription start site region 148860
Tssr148861 17 57021687 to 57021700 13 - TSS region transcription start site region 148861
Tssr148862 17 57022024 to 57022049 25 - TSS region transcription start site region 148862
Tssr148863 17 57022088 to 57022150 62 - TSS region transcription start site region 148863
Tssr148864 17 57022421 to 57022436 15 - TSS region transcription start site region 148864
Tssr148865 17 57022461 to 57022509 48 - TSS region transcription start site region 148865
Cpgi9387 17 57022618 to 57022788 170 CpG island CpG island 9387
Tssr148866 17 57023545 to 57023555 10 - TSS region transcription start site region 148866
Tssr148867 17 57024272 to 57024300 28 - TSS region transcription start site region 148867
Tssr5179 17 57024820 to 57024831 11 + TSS region transcription start site region 5179
Cpgi9388 17 57030680 to 57032283 1603 CpG island CpG island 9388
Tssr5180 17 57031438 to 57031443 5 - TSS region transcription start site region 5180
Tssr148868 17 57031468 to 57031538 70 - TSS region transcription start site region 148868
Tssr148869 17 57031540 to 57031551 11 - TSS region transcription start site region 148869
Tssr145364 17 57032213 to 57032235 22 + TSS region transcription start site region 145364
Slc25a41 17 57032773 to 57041654 8881 - protein coding gene solute carrier family 25, member 41
Cpgi9389 17 57038362 to 57038700 338 CpG island CpG island 9389
Tssr148870 17 57041659 to 57041662 3 - TSS region transcription start site region 148870
Gm17168 17 57041775 to 57047143 5368 + antisense lncRNA gene predicted gene 17168
Slc25a23 17 57043711 to 57059863 16152 - protein coding gene solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23
Tssr148871 17 57044090 to 57044110 20 - TSS region transcription start site region 148871
Tssr148872 17 57044501 to 57044521 20 - TSS region transcription start site region 148872
Tssr148873 17 57044536 to 57044551 15 - TSS region transcription start site region 148873
Tssr148874 17 57045319 to 57045361 42 - TSS region transcription start site region 148874
Tssr5181 17 57045569 to 57045602 33 - TSS region transcription start site region 5181