Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:64307491-73219253

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424 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sicd2 15 3444907 to 71325689 67880782 QTL seizure-induced cell death 2
Lfnq3 15 40313626 to 72500731 32187105 QTL lung function QTL 3
Eae2b 15 51141298 to 65072459 13931161 QTL experimental allergic encephalomyelitis susceptibility 2b
Asap1 15 64086857 to 64382919 296062 - protein coding gene ArfGAP with SH3 domain, ankyrin repeat and PH domain1
Cpgi7137 15 64311779 to 64313251 1472 CpG island CpG island 7137
Tssr134533 15 64312492 to 64312508 16 - TSS region transcription start site region 134533
Tssr134534 15 64312513 to 64312539 26 - TSS region transcription start site region 134534
Tssr134535 15 64312546 to 64312584 38 - TSS region transcription start site region 134535
Tssr134536 15 64312604 to 64312630 26 - TSS region transcription start site region 134536
Tssr134537 15 64312636 to 64312692 56 - TSS region transcription start site region 134537
Tssr134538 15 64312793 to 64312814 21 - TSS region transcription start site region 134538
1700010G06Rik 15 64314497 to 64316076 1579 + antisense lncRNA gene RIKEN cDNA 1700010G06 gene
Gm10926 15 64328028 to 64329017 989 - unclassified non-coding RNA gene predicted gene 10926
Cpgi7138 15 64382151 to 64383262 1111 CpG island CpG island 7138
Tssr134539 15 64382736 to 64382845 109 - TSS region transcription start site region 134539
Tssr134540 15 64382908 to 64382936 28 - TSS region transcription start site region 134540
Tssr134541 15 64382937 to 64382958 21 - TSS region transcription start site region 134541
Tssr134542 15 64383023 to 64383035 12 - TSS region transcription start site region 134542
Tssr134543 15 64383039 to 64383069 30 - TSS region transcription start site region 134543
Tssr134544 15 64383076 to 64383087 11 - TSS region transcription start site region 134544
Gm30563 15 64396379 to 64433598 37219 + lincRNA gene predicted gene, 30563
D15Mit122 15 64434485 to 64434630 145 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 122
Hfib1 15 64434485 to 64434630 145 QTL hepatic fibrogenesis 1
Gm46509 15 64503053 to 64503554 501 - lncRNA gene predicted gene, 46509
Gm30632 15 64534004 to 64572818 38814 + lncRNA gene predicted gene, 30632
D15Mit133 15 64537747 to 64537842 95 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 133
Gct3 15 64537747 to 64537842 95 QTL granulosa cell tumorigenesis 3
Tssr134545 15 64571164 to 64571168 4 - TSS region transcription start site region 134545
Tssr131457 15 64613791 to 64613806 15 + TSS region transcription start site region 131457
Gm30691 15 64627441 to 64630705 3264 - lincRNA gene predicted gene, 30691
Adcy8 15 64699035 to 64922296 223261 - protein coding gene adenylate cyclase 8
Gm30752 15 64798244 to 64813532 15288 + lncRNA gene predicted gene, 30752
Gm21798 15 64817694 to 64937996 120302 + protein coding gene predicted gene, 21798
Cpgi7139 15 64920270 to 64922676 2406 CpG island CpG island 7139
Tssr134546 15 64920984 to 64920995 11 - TSS region transcription start site region 134546
Tssr134547 15 64921385 to 64921403 18 - TSS region transcription start site region 134547
Tssr4612 15 64921457 to 64921485 28 - TSS region transcription start site region 4612
Tssr134548 15 64921610 to 64921688 78 - TSS region transcription start site region 134548
Tssr134549 15 64922290 to 64922315 25 - TSS region transcription start site region 134549
Tssr134550 15 64922325 to 64922341 16 - TSS region transcription start site region 134550
Tssr134551 15 64923135 to 64923162 27 - TSS region transcription start site region 134551
Gm21961 15 64979544 to 65014904 35360 - protein coding gene predicted gene, 21961
D15Mit65 15 64979823 to 64979972 149 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 65
Gm5046 15 65015154 to 65015764 610 + pseudogene predicted gene 5046
Gm49241 15 65041574 to 65042067 493 + pseudogene predicted gene, 49241
D15Mit234 15 65072337 to 65072459 122 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 234
Gm7814 15 65195339 to 65195778 439 + pseudogene predicted gene 7814
Gm49242 15 65200234 to 65200562 328 - pseudogene predicted gene, 49242
D15Mit63 15 65245184 to 65245328 144 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 63
D15Mit64 15 65522964 to 65523070 106 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 64
D15Mit102 15 65565716 to 65565915 199 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 102
D15Mit62 15 65593513 to 65593647 134 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 62
Pcir3 15 65593513 to 65593647 134 QTL periosteal circumference 3
Gm49243 15 65687828 to 65688148 320 - pseudogene predicted gene, 49243
Gm23907 15 65694549 to 65694737 188 + snRNA gene predicted gene, 23907
Gm41339 15 65778741 to 65786963 8222 - lncRNA gene predicted gene, 41339
Cpgi7140 15 65786681 to 65787783 1102 CpG island CpG island 7140
Tssr134552 15 65786982 to 65786993 11 - TSS region transcription start site region 134552
Tssr131458 15 65787023 to 65787090 67 + TSS region transcription start site region 131458
Efr3a 15 65787034 to 65873816 86782 + protein coding gene EFR3 homolog A
Tssr131459 15 65787100 to 65787117 17 + TSS region transcription start site region 131459
Gm41338 15 65787253 to 65793156 5903 + lncRNA gene predicted gene, 41338
Tssr131460 15 65805005 to 65805012 7 + TSS region transcription start site region 131460
Tssr131461 15 65810179 to 65810186 7 + TSS region transcription start site region 131461
Tssr131462 15 65810217 to 65810228 11 + TSS region transcription start site region 131462
Gm20405 15 65857869 to 65858356 487 + unclassified non-coding RNA gene predicted gene 20405
Tssr131463 15 65865663 to 65865698 35 + TSS region transcription start site region 131463
Oc90 15 65876053 to 65912397 36344 - protein coding gene otoconin 90
Tssr134553 15 65912285 to 65912292 7 - TSS region transcription start site region 134553
Tssr134554 15 65912347 to 65912357 10 - TSS region transcription start site region 134554
Tssr134555 15 65912419 to 65912437 18 - TSS region transcription start site region 134555
Hhla1 15 65922443 to 65976804 54361 - protein coding gene HERV-H LTR-associating 1
Tssr131464 15 65926814 to 65926821 7 + TSS region transcription start site region 131464
Gm2991 15 65928454 to 65928933 479 - pseudogene predicted pseudogene 2991
Tssr4613 15 65947346 to 65947347 1 + TSS region transcription start site region 4613
Tssr134556 15 65976800 to 65976805 5 - TSS region transcription start site region 134556
Kcnq3 15 65986390 to 66286636 300246 - protein coding gene potassium voltage-gated channel, subfamily Q, member 3
Tssr134557 15 65993084 to 65993092 8 - TSS region transcription start site region 134557
Gm27153 15 66074552 to 66091807 17255 + antisense lncRNA gene predicted gene 27153
Tssr134558 15 66135457 to 66135459 2 - TSS region transcription start site region 134558
Tssr131465 15 66152702 to 66152709 7 + TSS region transcription start site region 131465
D15Mit233 15 66247272 to 66247376 104 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 233
Cpgi7141 15 66285603 to 66287307 1704 CpG island CpG island 7141
Tssr134559 15 66286596 to 66286661 65 - TSS region transcription start site region 134559
Tssr134560 15 66286765 to 66286802 37 - TSS region transcription start site region 134560
Tssr134561 15 66286803 to 66286821 18 - TSS region transcription start site region 134561
Gm27242 15 66286917 to 66290243 3326 + lincRNA gene predicted gene 27242
Gm30929 15 66335133 to 66340714 5581 - lincRNA gene predicted gene, 30929
Gm41340 15 66354228 to 66357518 3290 + lncRNA gene predicted gene, 41340
Gm19077 15 66357519 to 66358391 872 - pseudogene predicted gene, 19077
Lrrc6 15 66379858 to 66500910 121052 - protein coding gene leucine rich repeat containing 6 (testis)
Tssr131466 15 66445559 to 66445597 38 + TSS region transcription start site region 131466
Tssr134562 15 66453842 to 66453846 4 - TSS region transcription start site region 134562
Tssr134563 15 66500857 to 66500905 48 - TSS region transcription start site region 134563
Gm31006 15 66500908 to 66507723 6815 + lncRNA gene predicted gene, 31006
Tmem71 15 66526212 to 66561103 34891 - protein coding gene transmembrane protein 71
Tssr131467 15 66541587 to 66541608 21 + TSS region transcription start site region 131467
Tssr134564 15 66560936 to 66560984 48 - TSS region transcription start site region 134564
Tssr134565 15 66560997 to 66561067 70 - TSS region transcription start site region 134565
Tssr134566 15 66561070 to 66561081 11 - TSS region transcription start site region 134566
Tssr134567 15 66561089 to 66561100 11 - TSS region transcription start site region 134567
D15Mit101 15 66570909 to 66571106 197 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 101
Cpgi7142 15 66577282 to 66578206 924 CpG island CpG island 7142
Phf20l1 15 66577519 to 66647043 69524 + protein coding gene PHD finger protein 20-like 1
Tssr131468 15 66577522 to 66577533 11 + TSS region transcription start site region 131468
Tssr131469 15 66577536 to 66577637 101 + TSS region transcription start site region 131469
Tssr131470 15 66579182 to 66579185 3 + TSS region transcription start site region 131470
Tssr131471 15 66604080 to 66604091 11 + TSS region transcription start site region 131471
Tssr131472 15 66615717 to 66615734 17 + TSS region transcription start site region 131472
Tssr131473 15 66615763 to 66615799 36 + TSS region transcription start site region 131473
Tssr131474 15 66642899 to 66642924 25 + TSS region transcription start site region 131474
D15Ertd509e 15 66646789 to 66647019 230 DNA segment DNA segment, Chr 15, ERATO Doi 509, expressed
Tssr131475 15 66670749 to 66670754 5 + TSS region transcription start site region 131475
Lcho4 15 66670754 to 66850721 179967 QTL liver cholesterol 4
Tg 15 66670754 to 66850721 179967 + protein coding gene thyroglobulin
Tssr131476 15 66700956 to 66700961 5 + TSS region transcription start site region 131476
Tssr134568 15 66702583 to 66702612 29 - TSS region transcription start site region 134568
Tssr134569 15 66702664 to 66702686 22 - TSS region transcription start site region 134569
Gm17140 15 66739059 to 66744327 5268 - antisense lncRNA gene predicted gene 17140
D15Mit211 15 66754868 to 66754992 124 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 211
Sla 15 66780819 to 66831829 51010 - protein coding gene src-like adaptor
Tssr4614 15 66782880 to 66782882 2 - TSS region transcription start site region 4614
Tssr134570 15 66783070 to 66783108 38 - TSS region transcription start site region 134570
Tssr134571 15 66792787 to 66792800 13 - TSS region transcription start site region 134571
Tssr134572 15 66792857 to 66792858 1 - TSS region transcription start site region 134572
Tssr131477 15 66798697 to 66798706 9 + TSS region transcription start site region 131477
Tssr131478 15 66798732 to 66798742 10 + TSS region transcription start site region 131478
Tssr131479 15 66798744 to 66798751 7 + TSS region transcription start site region 131479
Tssr134573 15 66801542 to 66801567 25 - TSS region transcription start site region 134573
Tssr134574 15 66801577 to 66801599 22 - TSS region transcription start site region 134574
Tssr134575 15 66801605 to 66801620 15 - TSS region transcription start site region 134575
Tssr134576 15 66801621 to 66801637 16 - TSS region transcription start site region 134576
Tssr131480 15 66801666 to 66801670 4 + TSS region transcription start site region 131480
Tssr134577 15 66801674 to 66801693 19 - TSS region transcription start site region 134577
Tssr134578 15 66803844 to 66803857 13 - TSS region transcription start site region 134578
Tssr131481 15 66803979 to 66804001 22 + TSS region transcription start site region 131481
Tssr134579 15 66804018 to 66804034 16 - TSS region transcription start site region 134579
Tssr134580 15 66804043 to 66804054 11 - TSS region transcription start site region 134580
Tssr134581 15 66804060 to 66804069 9 - TSS region transcription start site region 134581
Tssr134582 15 66804078 to 66804093 15 - TSS region transcription start site region 134582
Tssr131482 15 66804157 to 66804205 48 + TSS region transcription start site region 131482
Tssr131483 15 66807506 to 66807528 22 + TSS region transcription start site region 131483
Tssr134583 15 66810140 to 66810143 3 - TSS region transcription start site region 134583
Tssr134584 15 66810613 to 66810627 14 - TSS region transcription start site region 134584
Tssr134585 15 66812058 to 66812103 45 - TSS region transcription start site region 134585
Tssr134586 15 66812112 to 66812135 23 - TSS region transcription start site region 134586
Tssr134587 15 66812187 to 66812214 27 - TSS region transcription start site region 134587
Tssr131484 15 66812234 to 66812244 10 + TSS region transcription start site region 131484
Tssr131485 15 66812360 to 66812378 18 + TSS region transcription start site region 131485
Tssr134588 15 66812637 to 66812649 12 - TSS region transcription start site region 134588
Tssr134589 15 66812659 to 66812680 21 - TSS region transcription start site region 134589
Tssr134590 15 66812685 to 66812710 25 - TSS region transcription start site region 134590
Tssr134591 15 66812716 to 66812732 16 - TSS region transcription start site region 134591
Tssr134592 15 66813197 to 66813226 29 - TSS region transcription start site region 134592
Tssr134593 15 66831625 to 66831668 43 - TSS region transcription start site region 134593
D15Mit106 15 66843674 to 66843764 90 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 106
Tssr134594 15 66865197 to 66865207 10 - TSS region transcription start site region 134594
Tssr131486 15 66868800 to 66868805 5 + TSS region transcription start site region 131486
Gm46514 15 66876880 to 66891331 14451 - lncRNA gene predicted gene, 46514
Ccn4 15 66891325 to 66923205 31880 + protein coding gene cellular communication network factor 4
Tssr131487 15 66891363 to 66891375 12 + TSS region transcription start site region 131487
Tssr131488 15 66891378 to 66891389 11 + TSS region transcription start site region 131488
Cpgi7143 15 66891391 to 66891572 181 CpG island CpG island 7143
Tssr131489 15 66891414 to 66891430 16 + TSS region transcription start site region 131489
Tssr131490 15 66891457 to 66891468 11 + TSS region transcription start site region 131490
Tssr131491 15 66891477 to 66891495 18 + TSS region transcription start site region 131491
Tssr131492 15 66891539 to 66891546 7 + TSS region transcription start site region 131492
Tssr131493 15 66909255 to 66909272 17 + TSS region transcription start site region 131493
Tssr131494 15 66909289 to 66909300 11 + TSS region transcription start site region 131494
Ndrg1 15 66929318 to 66969640 40322 - protein coding gene N-myc downstream regulated gene 1
Gm17035 15 66929607 to 66931107 1500 + antisense lncRNA gene predicted gene 17035
Tssr134595 15 66935115 to 66935123 8 - TSS region transcription start site region 134595
Tssr134596 15 66940216 to 66940229 13 - TSS region transcription start site region 134596
Tssr134597 15 66943113 to 66943136 23 - TSS region transcription start site region 134597
Tssr134598 15 66944025 to 66944063 38 - TSS region transcription start site region 134598
Tssr134599 15 66948419 to 66948427 8 - TSS region transcription start site region 134599
Tssr134600 15 66949050 to 66949068 18 - TSS region transcription start site region 134600
Tssr134601 15 66949228 to 66949234 6 - TSS region transcription start site region 134601
Cpgi7144 15 66968530 to 66970456 1926 CpG island CpG island 7144
Tssr134602 15 66969632 to 66969647 15 - TSS region transcription start site region 134602
Gm2895 15 66969780 to 67012703 42923 + bidirectional promoter lncRNA gene predicted gene 2895
Tssr134603 15 66969938 to 66969953 15 - TSS region transcription start site region 134603
Tssr134604 15 66978407 to 66978408 1 - TSS region transcription start site region 134604
Gm31286 15 67020386 to 67033257 12871 + lncRNA gene predicted gene, 31286
Gm31342 15 67040058 to 67040824 766 + lincRNA gene predicted gene, 31342
Tssr134605 15 67083065 to 67083072 7 - TSS region transcription start site region 134605
Tssr134606 15 67102023 to 67102041 18 - TSS region transcription start site region 134606
St3gal1 15 67102875 to 67176830 73955 - protein coding gene ST3 beta-galactoside alpha-2,3-sialyltransferase 1
Tssr134607 15 67104954 to 67104964 10 - TSS region transcription start site region 134607
Tssr134608 15 67105063 to 67105085 22 - TSS region transcription start site region 134608
Tssr134609 15 67105136 to 67105178 42 - TSS region transcription start site region 134609
Tssr4615 15 67107395 to 67107396 1 + TSS region transcription start site region 4615
Tssr134610 15 67113909 to 67113946 37 - TSS region transcription start site region 134610
Tssr134611 15 67114888 to 67114909 21 - TSS region transcription start site region 134611
Tssr134612 15 67115176 to 67115193 17 - TSS region transcription start site region 134612
Tssr134613 15 67128852 to 67128874 22 - TSS region transcription start site region 134613
Tssr134614 15 67128895 to 67128896 1 - TSS region transcription start site region 134614
Tssr134615 15 67128920 to 67128929 9 - TSS region transcription start site region 134615
Tssr134616 15 67128952 to 67128963 11 - TSS region transcription start site region 134616
Tssr134617 15 67128987 to 67129005 18 - TSS region transcription start site region 134617