Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:62803135-67043162

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277 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eae2b 15 51141298 to 65072459 13931161 QTL experimental allergic encephalomyelitis susceptibility 2b
Tssr134491 15 62809289 to 62809298 9 - TSS region transcription start site region 134491
D15Mit208 15 62826050 to 62826194 144 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 208
Tssr131445 15 62886369 to 62886375 6 + TSS region transcription start site region 131445
Tssr131446 15 62893880 to 62893890 10 + TSS region transcription start site region 131446
Gm30113 15 62954216 to 62957872 3656 + lncRNA gene predicted gene, 30113
Tsg101-ps 15 62980648 to 62981817 1169 + pseudogene tumor susceptibility gene 101, pseudogene
Tssr131447 15 62981153 to 62981179 26 + TSS region transcription start site region 131447
Gm41334 15 63067500 to 63070764 3264 - lncRNA gene predicted gene, 41334
Gm30159 15 63110465 to 63145446 34981 - lincRNA gene predicted gene, 30159
Gm49013 15 63146233 to 63146716 483 + pseudogene predicted gene, 49013
Gm49014 15 63255904 to 63278780 22876 + lincRNA gene predicted gene, 49014
Tssr131448 15 63255938 to 63255953 15 + TSS region transcription start site region 131448
Tssr134492 15 63270456 to 63270461 5 - TSS region transcription start site region 134492
Gm41335 15 63353241 to 63357026 3785 - lincRNA gene predicted gene, 41335
Gm20740 15 63414397 to 63479608 65211 - lncRNA gene predicted gene, 20740
Tssr134493 15 63470893 to 63470897 4 - TSS region transcription start site region 134493
Tssr131449 15 63476200 to 63476204 4 + TSS region transcription start site region 131449
Tssr134494 15 63479543 to 63479554 11 - TSS region transcription start site region 134494
Tssr134495 15 63479622 to 63479646 24 - TSS region transcription start site region 134495
Tssr134496 15 63479661 to 63479670 9 - TSS region transcription start site region 134496
Gm25702 15 63481214 to 63481276 62 - snRNA gene predicted gene, 25702
Gm4942 15 63490962 to 63492293 1331 - pseudogene predicted gene 4942
Msq1 15 63517797 to 81202235 17684438 QTL MAV-1 susceptibility QTL 1
D15Mit270 15 63517797 to 63517996 199 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 270
Alaa4 15 63517797 to 63517996 199 QTL alopecia areata 4
Amzn3 15 63517797 to 63517996 199 QTL anatomical modifier of Zfp423 3
Tssr4608 15 63530300 to 63530302 2 + TSS region transcription start site region 4608
Cpgi7134 15 63572957 to 63573277 320 CpG island CpG island 7134
Tssr134497 15 63611212 to 63611224 12 - TSS region transcription start site region 134497
Tssr131450 15 63611447 to 63611471 24 + TSS region transcription start site region 131450
Gm5473 15 63631697 to 63632338 641 + pseudogene predicted pseudogene 5473
Tssr134498 15 63647890 to 63647904 14 - TSS region transcription start site region 134498
Tssr134499 15 63649119 to 63649129 10 - TSS region transcription start site region 134499
Tssr134500 15 63718246 to 63718292 46 - TSS region transcription start site region 134500
4930449C09Rik 15 63718318 to 63737296 18978 + lincRNA gene RIKEN cDNA 4930449C09 gene
Tssr131451 15 63718341 to 63718373 32 + TSS region transcription start site region 131451
Gm41336 15 63740669 to 63745351 4682 + lincRNA gene predicted gene, 41336
Gm49019 15 63751659 to 63755435 3776 + lincRNA gene predicted gene, 49019
Gm46499 15 63760161 to 63760580 419 + pseudogene predicted gene, 46499
Gsdmc 15 63775971 to 63808739 32768 - protein coding gene gasdermin C
Tssr134501 15 63808733 to 63808745 12 - TSS region transcription start site region 134501
Tssr134502 15 63808747 to 63808752 5 - TSS region transcription start site region 134502
Tssr4609 15 63814339 to 63814360 21 - TSS region transcription start site region 4609
1700065I16Rik 15 63817188 to 63819540 2352 + pseudogene RIKEN cDNA 1700065I16 gene
Gsdmc2 15 63824346 to 63845177 20831 - protein coding gene gasdermin C2
Gsdmcl1 15 63847309 to 63850942 3633 + pseudogene gasdermin C-like 1
Gsdmc3 15 63857724 to 63878558 20834 - protein coding gene gasdermin C3
Tssr4610 15 63878548 to 63878549 1 - TSS region transcription start site region 4610
Gsdmcl2 15 63880707 to 63889073 8366 + pseudogene gasdermin C-like 2
Gsdmc4 15 63891264 to 63912297 21033 - protein coding gene gasdermin C4
Tssr134503 15 63912287 to 63912297 10 - TSS region transcription start site region 134503
Gsdmcl-ps 15 63914461 to 63925453 10992 + pseudogene gasdermin C-like, pseudogene
Fam49b 15 63929094 to 64060452 131358 - protein coding gene family with sequence similarity 49, member B
Tssr134504 15 63943261 to 63943308 47 - TSS region transcription start site region 134504
Tssr134505 15 63963665 to 63963679 14 - TSS region transcription start site region 134505
Tssr134506 15 63975451 to 63975455 4 - TSS region transcription start site region 134506
Tssr134507 15 63985528 to 63985532 4 - TSS region transcription start site region 134507
Tssr134508 15 63990618 to 63990621 3 - TSS region transcription start site region 134508
Cpgi7135 15 63997434 to 63998804 1370 CpG island CpG island 7135
Tssr134509 15 63998043 to 63998054 11 - TSS region transcription start site region 134509
Tssr134510 15 63998071 to 63998101 30 - TSS region transcription start site region 134510
Tssr4611 15 63998135 to 63998138 3 - TSS region transcription start site region 4611
Tssr134511 15 63998174 to 63998185 11 - TSS region transcription start site region 134511
Tssr134512 15 64012829 to 64012836 7 - TSS region transcription start site region 134512
Tssr134513 15 64015524 to 64015540 16 - TSS region transcription start site region 134513
Tssr134514 15 64022989 to 64022993 4 - TSS region transcription start site region 134514
Tssr131452 15 64024087 to 64024094 7 + TSS region transcription start site region 131452
Gm25628 15 64025948 to 64026052 104 + snRNA gene predicted gene, 25628
A230048O21Rik 15 64027262 to 64030952 3690 unclassified gene RIKEN cDNA A230048O21 gene
Tssr131453 15 64055373 to 64055386 13 + TSS region transcription start site region 131453
Tssr134515 15 64058998 to 64059001 3 - TSS region transcription start site region 134515
Cpgi7136 15 64059555 to 64060956 1401 CpG island CpG island 7136
Tssr134516 15 64059782 to 64059786 4 - TSS region transcription start site region 134516
Tssr134517 15 64060218 to 64060278 60 - TSS region transcription start site region 134517
Tssr134518 15 64060309 to 64060318 9 - TSS region transcription start site region 134518
Tssr134519 15 64060327 to 64060435 108 - TSS region transcription start site region 134519
Tssr134520 15 64060439 to 64060478 39 - TSS region transcription start site region 134520
Tssr134521 15 64060676 to 64060690 14 - TSS region transcription start site region 134521
Asap1 15 64086857 to 64382919 296062 - protein coding gene ArfGAP with SH3 domain, ankyrin repeat and PH domain1
Tssr134522 15 64095339 to 64095341 2 - TSS region transcription start site region 134522
Tssr131454 15 64098316 to 64098351 35 + TSS region transcription start site region 131454
Gm20717 15 64098317 to 64101397 3080 + antisense lncRNA gene predicted gene 20717
Tssr134523 15 64110988 to 64111003 15 - TSS region transcription start site region 134523
Tssr134524 15 64133247 to 64133264 17 - TSS region transcription start site region 134524
Tssr134525 15 64135803 to 64135806 3 - TSS region transcription start site region 134525
Tssr134526 15 64156259 to 64156264 5 - TSS region transcription start site region 134526
Tssr131455 15 64173270 to 64173278 8 + TSS region transcription start site region 131455
Tssr134527 15 64182423 to 64182428 5 - TSS region transcription start site region 134527
Tssr131456 15 64220503 to 64220508 5 + TSS region transcription start site region 131456
Tssr134528 15 64242690 to 64242698 8 - TSS region transcription start site region 134528
Tssr134529 15 64285288 to 64285296 8 - TSS region transcription start site region 134529
Tssr134530 15 64303182 to 64303187 5 - TSS region transcription start site region 134530
Tssr134531 15 64304952 to 64304970 18 - TSS region transcription start site region 134531
Tssr134532 15 64304996 to 64305018 22 - TSS region transcription start site region 134532
Cpgi7137 15 64311779 to 64313251 1472 CpG island CpG island 7137
Tssr134533 15 64312492 to 64312508 16 - TSS region transcription start site region 134533
Tssr134534 15 64312513 to 64312539 26 - TSS region transcription start site region 134534
Tssr134535 15 64312546 to 64312584 38 - TSS region transcription start site region 134535
Tssr134536 15 64312604 to 64312630 26 - TSS region transcription start site region 134536
Tssr134537 15 64312636 to 64312692 56 - TSS region transcription start site region 134537
Tssr134538 15 64312793 to 64312814 21 - TSS region transcription start site region 134538
1700010G06Rik 15 64314497 to 64316076 1579 + antisense lncRNA gene RIKEN cDNA 1700010G06 gene
Gm10926 15 64328028 to 64329017 989 - unclassified non-coding RNA gene predicted gene 10926
Cpgi7138 15 64382151 to 64383262 1111 CpG island CpG island 7138
Tssr134539 15 64382736 to 64382845 109 - TSS region transcription start site region 134539
Tssr134540 15 64382908 to 64382936 28 - TSS region transcription start site region 134540
Tssr134541 15 64382937 to 64382958 21 - TSS region transcription start site region 134541
Tssr134542 15 64383023 to 64383035 12 - TSS region transcription start site region 134542
Tssr134543 15 64383039 to 64383069 30 - TSS region transcription start site region 134543
Tssr134544 15 64383076 to 64383087 11 - TSS region transcription start site region 134544
Gm30563 15 64396379 to 64433598 37219 + lincRNA gene predicted gene, 30563
D15Mit122 15 64434485 to 64434630 145 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 122
Hfib1 15 64434485 to 64434630 145 QTL hepatic fibrogenesis 1
Gm46509 15 64503053 to 64503554 501 - lncRNA gene predicted gene, 46509
Gm30632 15 64534004 to 64572818 38814 + lncRNA gene predicted gene, 30632
D15Mit133 15 64537747 to 64537842 95 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 133
Gct3 15 64537747 to 64537842 95 QTL granulosa cell tumorigenesis 3
Tssr134545 15 64571164 to 64571168 4 - TSS region transcription start site region 134545
Tssr131457 15 64613791 to 64613806 15 + TSS region transcription start site region 131457
Gm30691 15 64627441 to 64630705 3264 - lincRNA gene predicted gene, 30691
Adcy8 15 64699035 to 64922296 223261 - protein coding gene adenylate cyclase 8
Gm30752 15 64798244 to 64813532 15288 + lncRNA gene predicted gene, 30752
Gm21798 15 64817694 to 64937996 120302 + protein coding gene predicted gene, 21798
Cpgi7139 15 64920270 to 64922676 2406 CpG island CpG island 7139
Tssr134546 15 64920984 to 64920995 11 - TSS region transcription start site region 134546
Tssr134547 15 64921385 to 64921403 18 - TSS region transcription start site region 134547
Tssr4612 15 64921457 to 64921485 28 - TSS region transcription start site region 4612
Tssr134548 15 64921610 to 64921688 78 - TSS region transcription start site region 134548
Tssr134549 15 64922290 to 64922315 25 - TSS region transcription start site region 134549
Tssr134550 15 64922325 to 64922341 16 - TSS region transcription start site region 134550
Tssr134551 15 64923135 to 64923162 27 - TSS region transcription start site region 134551
Gm21961 15 64979544 to 65014904 35360 - protein coding gene predicted gene, 21961
D15Mit65 15 64979823 to 64979972 149 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 65
Gm5046 15 65015154 to 65015764 610 + pseudogene predicted gene 5046
Gm49241 15 65041574 to 65042067 493 + pseudogene predicted gene, 49241
D15Mit234 15 65072337 to 65072459 122 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 234
Gm7814 15 65195339 to 65195778 439 + pseudogene predicted gene 7814
Gm49242 15 65200234 to 65200562 328 - pseudogene predicted gene, 49242
D15Mit63 15 65245184 to 65245328 144 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 63
D15Mit64 15 65522964 to 65523070 106 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 64
D15Mit102 15 65565716 to 65565915 199 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 102
D15Mit62 15 65593513 to 65593647 134 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 62
Pcir3 15 65593513 to 65593647 134 QTL periosteal circumference 3
Gm49243 15 65687828 to 65688148 320 - pseudogene predicted gene, 49243
Gm23907 15 65694549 to 65694737 188 + snRNA gene predicted gene, 23907
Gm41339 15 65778741 to 65786963 8222 - lncRNA gene predicted gene, 41339
Cpgi7140 15 65786681 to 65787783 1102 CpG island CpG island 7140
Tssr134552 15 65786982 to 65786993 11 - TSS region transcription start site region 134552
Tssr131458 15 65787023 to 65787090 67 + TSS region transcription start site region 131458
Efr3a 15 65787034 to 65873816 86782 + protein coding gene EFR3 homolog A
Tssr131459 15 65787100 to 65787117 17 + TSS region transcription start site region 131459
Gm41338 15 65787253 to 65793156 5903 + lncRNA gene predicted gene, 41338
Tssr131460 15 65805005 to 65805012 7 + TSS region transcription start site region 131460
Tssr131461 15 65810179 to 65810186 7 + TSS region transcription start site region 131461
Tssr131462 15 65810217 to 65810228 11 + TSS region transcription start site region 131462
Gm20405 15 65857869 to 65858356 487 + unclassified non-coding RNA gene predicted gene 20405
Tssr131463 15 65865663 to 65865698 35 + TSS region transcription start site region 131463
Oc90 15 65876053 to 65912397 36344 - protein coding gene otoconin 90
Tssr134553 15 65912285 to 65912292 7 - TSS region transcription start site region 134553
Tssr134554 15 65912347 to 65912357 10 - TSS region transcription start site region 134554
Tssr134555 15 65912419 to 65912437 18 - TSS region transcription start site region 134555
Hhla1 15 65922443 to 65976804 54361 - protein coding gene HERV-H LTR-associating 1
Tssr131464 15 65926814 to 65926821 7 + TSS region transcription start site region 131464
Gm2991 15 65928454 to 65928933 479 - pseudogene predicted pseudogene 2991
Tssr4613 15 65947346 to 65947347 1 + TSS region transcription start site region 4613
Tssr134556 15 65976800 to 65976805 5 - TSS region transcription start site region 134556
Kcnq3 15 65986390 to 66286636 300246 - protein coding gene potassium voltage-gated channel, subfamily Q, member 3
Tssr134557 15 65993084 to 65993092 8 - TSS region transcription start site region 134557
Gm27153 15 66074552 to 66091807 17255 + antisense lncRNA gene predicted gene 27153
Tssr134558 15 66135457 to 66135459 2 - TSS region transcription start site region 134558
Tssr131465 15 66152702 to 66152709 7 + TSS region transcription start site region 131465
D15Mit233 15 66247272 to 66247376 104 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 233
Cpgi7141 15 66285603 to 66287307 1704 CpG island CpG island 7141
Tssr134559 15 66286596 to 66286661 65 - TSS region transcription start site region 134559
Tssr134560 15 66286765 to 66286802 37 - TSS region transcription start site region 134560
Tssr134561 15 66286803 to 66286821 18 - TSS region transcription start site region 134561
Gm27242 15 66286917 to 66290243 3326 + lincRNA gene predicted gene 27242
Gm30929 15 66335133 to 66340714 5581 - lincRNA gene predicted gene, 30929
Gm41340 15 66354228 to 66357518 3290 + lncRNA gene predicted gene, 41340
Gm19077 15 66357519 to 66358391 872 - pseudogene predicted gene, 19077
Lrrc6 15 66379858 to 66500910 121052 - protein coding gene leucine rich repeat containing 6 (testis)
Tssr131466 15 66445559 to 66445597 38 + TSS region transcription start site region 131466
Tssr134562 15 66453842 to 66453846 4 - TSS region transcription start site region 134562
Tssr134563 15 66500857 to 66500905 48 - TSS region transcription start site region 134563
Gm31006 15 66500908 to 66507723 6815 + lncRNA gene predicted gene, 31006
Tmem71 15 66526212 to 66561103 34891 - protein coding gene transmembrane protein 71
Tssr131467 15 66541587 to 66541608 21 + TSS region transcription start site region 131467
Tssr134564 15 66560936 to 66560984 48 - TSS region transcription start site region 134564
Tssr134565 15 66560997 to 66561067 70 - TSS region transcription start site region 134565
Tssr134566 15 66561070 to 66561081 11 - TSS region transcription start site region 134566
Tssr134567 15 66561089 to 66561100 11 - TSS region transcription start site region 134567
D15Mit101 15 66570909 to 66571106 197 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 101
Cpgi7142 15 66577282 to 66578206 924 CpG island CpG island 7142
Phf20l1 15 66577519 to 66647043 69524 + protein coding gene PHD finger protein 20-like 1
Tssr131468 15 66577522 to 66577533 11 + TSS region transcription start site region 131468
Tssr131469 15 66577536 to 66577637 101 + TSS region transcription start site region 131469
Tssr131470 15 66579182 to 66579185 3 + TSS region transcription start site region 131470
Tssr131471 15 66604080 to 66604091 11 + TSS region transcription start site region 131471
Tssr131472 15 66615717 to 66615734 17 + TSS region transcription start site region 131472