Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:62196233-64096716

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pvt1 15 62037986 to 62260215 222229 + lincRNA gene Pvt1 oncogene
H2afy3 15 62218221 to 62219332 1111 - pseudogene H2A histone family, member Y3
Tssr134489 15 62219446 to 62219452 6 - TSS region transcription start site region 134489
Tssr131438 15 62220510 to 62220517 7 + TSS region transcription start site region 131438
Tssr131439 15 62246524 to 62246528 4 + TSS region transcription start site region 131439
Tssr131440 15 62250553 to 62250556 3 + TSS region transcription start site region 131440
2900056L01Rik 15 62259291 to 62260214 923 unclassified gene RIKEN cDNA 2900056L01 gene
Tssr131441 15 62264414 to 62264418 4 + TSS region transcription start site region 131441
Tssr131442 15 62328715 to 62328721 6 + TSS region transcription start site region 131442
Tssr4607 15 62339522 to 62339524 2 - TSS region transcription start site region 4607
Tssr134490 15 62547960 to 62547968 8 - TSS region transcription start site region 134490
Gm24810 15 62652935 to 62653004 69 - miRNA gene predicted gene, 24810
Gm41333 15 62669184 to 62679142 9958 + lincRNA gene predicted gene, 41333
Tssr131443 15 62730821 to 62730841 20 + TSS region transcription start site region 131443
Tssr131444 15 62741060 to 62741070 10 + TSS region transcription start site region 131444
Gm22521 15 62793201 to 62793334 133 + snoRNA gene predicted gene, 22521
Tssr134491 15 62809289 to 62809298 9 - TSS region transcription start site region 134491
D15Mit208 15 62826050 to 62826194 144 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 208
Tssr131445 15 62886369 to 62886375 6 + TSS region transcription start site region 131445
Tssr131446 15 62893880 to 62893890 10 + TSS region transcription start site region 131446
Gm30113 15 62954216 to 62957872 3656 + lncRNA gene predicted gene, 30113
Tsg101-ps 15 62980648 to 62981817 1169 + pseudogene tumor susceptibility gene 101, pseudogene
Tssr131447 15 62981153 to 62981179 26 + TSS region transcription start site region 131447
Gm41334 15 63067500 to 63070764 3264 - lncRNA gene predicted gene, 41334
Gm30159 15 63110465 to 63145446 34981 - lincRNA gene predicted gene, 30159
Gm49013 15 63146233 to 63146716 483 + pseudogene predicted gene, 49013
Gm49014 15 63255904 to 63278780 22876 + lincRNA gene predicted gene, 49014
Tssr131448 15 63255938 to 63255953 15 + TSS region transcription start site region 131448
Tssr134492 15 63270456 to 63270461 5 - TSS region transcription start site region 134492
Gm41335 15 63353241 to 63357026 3785 - lincRNA gene predicted gene, 41335
Gm20740 15 63414397 to 63479608 65211 - lncRNA gene predicted gene, 20740
Tssr134493 15 63470893 to 63470897 4 - TSS region transcription start site region 134493
Tssr131449 15 63476200 to 63476204 4 + TSS region transcription start site region 131449
Tssr134494 15 63479543 to 63479554 11 - TSS region transcription start site region 134494
Tssr134495 15 63479622 to 63479646 24 - TSS region transcription start site region 134495
Tssr134496 15 63479661 to 63479670 9 - TSS region transcription start site region 134496
Gm25702 15 63481214 to 63481276 62 - snRNA gene predicted gene, 25702
Gm4942 15 63490962 to 63492293 1331 - pseudogene predicted gene 4942
Amzn3 15 63517797 to 63517996 199 QTL anatomical modifier of Zfp423 3
Alaa4 15 63517797 to 63517996 199 QTL alopecia areata 4
D15Mit270 15 63517797 to 63517996 199 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 270
Msq1 15 63517797 to 81202235 17684438 QTL MAV-1 susceptibility QTL 1
Tssr4608 15 63530300 to 63530302 2 + TSS region transcription start site region 4608
Cpgi7134 15 63572957 to 63573277 320 CpG island CpG island 7134
Tssr134497 15 63611212 to 63611224 12 - TSS region transcription start site region 134497
Tssr131450 15 63611447 to 63611471 24 + TSS region transcription start site region 131450
Gm5473 15 63631697 to 63632338 641 + pseudogene predicted pseudogene 5473
Tssr134498 15 63647890 to 63647904 14 - TSS region transcription start site region 134498
Tssr134499 15 63649119 to 63649129 10 - TSS region transcription start site region 134499
Tssr134500 15 63718246 to 63718292 46 - TSS region transcription start site region 134500
4930449C09Rik 15 63718318 to 63737296 18978 + lincRNA gene RIKEN cDNA 4930449C09 gene
Tssr131451 15 63718341 to 63718373 32 + TSS region transcription start site region 131451
Gm41336 15 63740669 to 63745351 4682 + lincRNA gene predicted gene, 41336
Gm49019 15 63751659 to 63755435 3776 + lincRNA gene predicted gene, 49019
Gm46499 15 63760161 to 63760580 419 + pseudogene predicted gene, 46499
Gsdmc 15 63775971 to 63808739 32768 - protein coding gene gasdermin C
Tssr134501 15 63808733 to 63808745 12 - TSS region transcription start site region 134501
Tssr134502 15 63808747 to 63808752 5 - TSS region transcription start site region 134502
Tssr4609 15 63814339 to 63814360 21 - TSS region transcription start site region 4609
1700065I16Rik 15 63817188 to 63819540 2352 + pseudogene RIKEN cDNA 1700065I16 gene
Gsdmc2 15 63824346 to 63845177 20831 - protein coding gene gasdermin C2
Gsdmcl1 15 63847309 to 63850942 3633 + pseudogene gasdermin C-like 1
Gsdmc3 15 63857724 to 63878558 20834 - protein coding gene gasdermin C3
Tssr4610 15 63878548 to 63878549 1 - TSS region transcription start site region 4610
Gsdmcl2 15 63880707 to 63889073 8366 + pseudogene gasdermin C-like 2
Gsdmc4 15 63891264 to 63912297 21033 - protein coding gene gasdermin C4
Tssr134503 15 63912287 to 63912297 10 - TSS region transcription start site region 134503
Gsdmcl-ps 15 63914461 to 63925453 10992 + pseudogene gasdermin C-like, pseudogene
Fam49b 15 63929094 to 64060452 131358 - protein coding gene family with sequence similarity 49, member B
Tssr134504 15 63943261 to 63943308 47 - TSS region transcription start site region 134504
Tssr134505 15 63963665 to 63963679 14 - TSS region transcription start site region 134505
Tssr134506 15 63975451 to 63975455 4 - TSS region transcription start site region 134506
Tssr134507 15 63985528 to 63985532 4 - TSS region transcription start site region 134507
Tssr134508 15 63990618 to 63990621 3 - TSS region transcription start site region 134508
Cpgi7135 15 63997434 to 63998804 1370 CpG island CpG island 7135
Tssr134509 15 63998043 to 63998054 11 - TSS region transcription start site region 134509
Tssr134510 15 63998071 to 63998101 30 - TSS region transcription start site region 134510
Tssr4611 15 63998135 to 63998138 3 - TSS region transcription start site region 4611
Tssr134511 15 63998174 to 63998185 11 - TSS region transcription start site region 134511
Tssr134512 15 64012829 to 64012836 7 - TSS region transcription start site region 134512
Tssr134513 15 64015524 to 64015540 16 - TSS region transcription start site region 134513
Tssr134514 15 64022989 to 64022993 4 - TSS region transcription start site region 134514
Tssr131452 15 64024087 to 64024094 7 + TSS region transcription start site region 131452
Gm25628 15 64025948 to 64026052 104 + snRNA gene predicted gene, 25628
A230048O21Rik 15 64027262 to 64030952 3690 unclassified gene RIKEN cDNA A230048O21 gene
Tssr131453 15 64055373 to 64055386 13 + TSS region transcription start site region 131453
Tssr134515 15 64058998 to 64059001 3 - TSS region transcription start site region 134515
Cpgi7136 15 64059555 to 64060956 1401 CpG island CpG island 7136
Tssr134516 15 64059782 to 64059786 4 - TSS region transcription start site region 134516
Tssr134517 15 64060218 to 64060278 60 - TSS region transcription start site region 134517
Tssr134518 15 64060309 to 64060318 9 - TSS region transcription start site region 134518
Tssr134519 15 64060327 to 64060435 108 - TSS region transcription start site region 134519
Tssr134520 15 64060439 to 64060478 39 - TSS region transcription start site region 134520
Tssr134521 15 64060676 to 64060690 14 - TSS region transcription start site region 134521
Asap1 15 64086857 to 64382919 296062 - protein coding gene ArfGAP with SH3 domain, ankyrin repeat and PH domain1
Tssr134522 15 64095339 to 64095341 2 - TSS region transcription start site region 134522