Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:57850268-59450400

Filter by:
100 genes found.
Gene symbol
Chromo-
some
Coordinates (bp, mm10)
Size (bp)
Strand
Feature Type
Gene name
Modor2 14 24925824 to 57942312 33016488 QTL modifier of ocular retardation 2
Zdhhc20 14 57832703 to 57890276 57573 - protein coding gene zinc finger, DHHC domain containing 20
Tssr125884 14 57878415 to 57878422 7 + TSS region transcription start site region 125884
Cpgi6549 14 57889543 to 57890715 1172 CpG island CpG island 6549
Tssr125885 14 57889780 to 57889792 12 + TSS region transcription start site region 125885
Tssr125886 14 57889811 to 57889846 35 + TSS region transcription start site region 125886
Tssr125887 14 57889990 to 57889999 9 + TSS region transcription start site region 125887
Tssr128982 14 57890184 to 57890239 55 - TSS region transcription start site region 128982
Tssr128983 14 57890242 to 57890320 78 - TSS region transcription start site region 128983
Cpgi6550 14 57910608 to 57910884 276 CpG island CpG island 6550
Micu2 14 57916261 to 57999262 83001 - protein coding gene mitochondrial calcium uptake 2
Tssr128984 14 57916609 to 57916618 9 - TSS region transcription start site region 128984
Tssr128985 14 57925392 to 57925422 30 - TSS region transcription start site region 128985
Tssr128986 14 57925465 to 57925484 19 - TSS region transcription start site region 128986
D14Mit154 14 57942183 to 57942312 129 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 154
Cpgi6551 14 57998754 to 57999620 866 CpG island CpG island 6551
Tssr128987 14 57999215 to 57999226 11 - TSS region transcription start site region 128987
Tssr128988 14 57999236 to 57999273 37 - TSS region transcription start site region 128988
Tssr125888 14 57999305 to 57999338 33 + TSS region transcription start site region 125888
3110083C13Rik 14 57999323 to 58003697 4374 + bidirectional promoter lncRNA gene RIKEN cDNA 3110083C13 gene
Tssr125889 14 57999348 to 57999362 14 + TSS region transcription start site region 125889
Cpgi6552 14 58034000 to 58034248 248 CpG island CpG island 6552
Tssr125890 14 58036606 to 58036617 11 + TSS region transcription start site region 125890
Tssr125891 14 58036664 to 58036669 5 + TSS region transcription start site region 125891
Tssr125892 14 58036678 to 58036693 15 + TSS region transcription start site region 125892
Gm9012 14 58049229 to 58049823 594 - pseudogene predicted gene 9012
Cpgi6553 14 58070608 to 58072669 2061 CpG island CpG island 6553
Tssr125893 14 58072215 to 58072229 14 + TSS region transcription start site region 125893
Tssr125894 14 58072280 to 58072305 25 + TSS region transcription start site region 125894
Fgf9 14 58072686 to 58112854 40168 + protein coding gene fibroblast growth factor 9
Cpgi6554 14 58073007 to 58073417 410 CpG island CpG island 6554
Cpgi6555 14 58073923 to 58074323 400 CpG island CpG island 6555
Cpgi6556 14 58074674 to 58076884 2210 CpG island CpG island 6556
Tssr125895 14 58085613 to 58085617 4 + TSS region transcription start site region 125895
Gm17109 14 58105772 to 58106129 357 - pseudogene predicted gene 17109
Tssr128989 14 58183216 to 58183222 6 - TSS region transcription start site region 128989
D14Mit1005 14 58213865 to 58214109 244 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 1005
Gm18080 14 58240221 to 58240834 613 + pseudogene predicted gene, 18080
Gm33321 14 58300802 to 58303365 2563 + lincRNA gene predicted gene, 33321
D14Mit215 14 58367064 to 58367186 122 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 215
Gm33430 14 58428853 to 58445140 16287 + lncRNA gene predicted gene, 33430
Gm25614 14 58650268 to 58650400 132 - snoRNA gene predicted gene, 25614
n-TTagt2 14 58818153 to 58818226 73 - tRNA gene nuclear encoded tRNA threonine 2 (anticodon AGT)
Gm9022 14 58879031 to 58880245 1214 - pseudogene predicted gene 9022
Cpgi6557 14 58893459 to 58893664 205 CpG island CpG island 6557
Tssr125896 14 58893465 to 58893469 4 + TSS region transcription start site region 125896
Rpl13-ps3 14 58893506 to 58894129 623 + pseudogene ribosomal protein L13, pseudogene 3
Gm48447 14 58912104 to 58939867 27763 + lincRNA gene predicted gene, 48447
Gm33472 14 59043940 to 59045944 2004 - lincRNA gene predicted gene, 33472
Gm41162 14 59046121 to 59067224 21103 + lincRNA gene predicted gene, 41162
Cpgi6558 14 59076250 to 59076503 253 CpG island CpG island 6558
Gm48453 14 59084136 to 59087118 2982 - lincRNA gene predicted gene, 48453
1700129C05Rik 14 59133040 to 59142893 9853 - protein coding gene RIKEN cDNA 1700129C05 gene
Tssr128990 14 59142886 to 59142898 12 - TSS region transcription start site region 128990
Gm5142 14 59158503 to 59178749 20246 - protein coding gene predicted gene 5142
Tssr128991 14 59178756 to 59178773 17 - TSS region transcription start site region 128991
Tssr128992 14 59178776 to 59178781 5 - TSS region transcription start site region 128992
Tssr125897 14 59178884 to 59178892 8 + TSS region transcription start site region 125897
Cpgi6559 14 59200704 to 59201837 1133 CpG island CpG island 6559
Tssr125898 14 59201031 to 59201053 22 + TSS region transcription start site region 125898
Rcbtb1 14 59201209 to 59237265 36056 + protein coding gene regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
Tssr125899 14 59201227 to 59201267 40 + TSS region transcription start site region 125899
Tssr125900 14 59201274 to 59201313 39 + TSS region transcription start site region 125900
Tssr125901 14 59201418 to 59201495 77 + TSS region transcription start site region 125901
Tssr125902 14 59201965 to 59201968 3 + TSS region transcription start site region 125902
Phf11-ps 14 59244441 to 59260216 15775 - pseudogene PHD finger protein 11, pseudogene
Tssr128993 14 59260185 to 59260191 6 - TSS region transcription start site region 128993
Tssr128994 14 59260203 to 59260228 25 - TSS region transcription start site region 128994
Phf11a 14 59276913 to 59297522 20609 - protein coding gene PHD finger protein 11A
Tssr128995 14 59297510 to 59297529 19 - TSS region transcription start site region 128995
Phf11b 14 59320964 to 59341351 20387 - protein coding gene PHD finger protein 11B
Tssr128996 14 59323197 to 59323233 36 - TSS region transcription start site region 128996
Tssr128997 14 59324151 to 59324172 21 - TSS region transcription start site region 128997
Tssr128998 14 59341325 to 59341358 33 - TSS region transcription start site region 128998
Phf11d 14 59347407 to 59365470 18063 - protein coding gene PHD finger protein 11D
Tssr128999 14 59365420 to 59365431 11 - TSS region transcription start site region 128999
Tssr129000 14 59365434 to 59365461 27 - TSS region transcription start site region 129000
Tssr129001 14 59365465 to 59365487 22 - TSS region transcription start site region 129001
Tssr129002 14 59370540 to 59370555 15 - TSS region transcription start site region 129002
Tssr129003 14 59377622 to 59377626 4 - TSS region transcription start site region 129003
Phf11c 14 59380833 to 59393512 12679 - protein coding gene PHD finger protein 11C
Gm45935 14 59380833 to 59440880 60047 - protein coding gene predicted gene, 45935
Tssr129004 14 59397174 to 59397216 42 - TSS region transcription start site region 129004
Setdb2 14 59402009 to 59440880 38871 - protein coding gene SET domain, bifurcated 2
Tssr129005 14 59407757 to 59407762 5 - TSS region transcription start site region 129005
Tssr129006 14 59412155 to 59412174 19 - TSS region transcription start site region 129006
Gm16301 14 59414270 to 59414564 294 - pseudogene predicted gene 16301
Tssr129007 14 59419069 to 59419099 30 - TSS region transcription start site region 129007
Tssr4441 14 59419197 to 59419208 11 - TSS region transcription start site region 4441
Tssr125903 14 59440572 to 59440582 10 + TSS region transcription start site region 125903
Cpgi6560 14 59440572 to 59441331 759 CpG island CpG island 6560
Tssr129008 14 59440779 to 59440887 108 - TSS region transcription start site region 129008
Tssr125904 14 59440947 to 59440996 49 + TSS region transcription start site region 125904
Cab39l 14 59440955 to 59548903 107948 + protein coding gene calcium binding protein 39-like
Tssr129009 14 59441088 to 59441097 9 - TSS region transcription start site region 129009
Tssr129010 14 59441103 to 59441108 5 - TSS region transcription start site region 129010
Tssr129011 14 59441302 to 59441307 5 - TSS region transcription start site region 129011
Tssr129012 14 59441309 to 59441310 1 - TSS region transcription start site region 129012
Tssr129013 14 59441311 to 59441317 6 - TSS region transcription start site region 129013
wrmod1 14 101622037 to 57942183 -43679854 QTL wobbler modifier 1