Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:20124638-20648910

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm41104 14 20129926 to 20131230 1304 + lncRNA gene predicted gene, 41104
Tssr127592 14 20138509 to 20138519 10 - TSS region transcription start site region 127592
Tssr127593 14 20138547 to 20138566 19 - TSS region transcription start site region 127593
Kcnk5 14 20140057 to 20181782 41725 - protein coding gene potassium channel, subfamily K, member 5
Tssr127594 14 20143688 to 20143713 25 - TSS region transcription start site region 127594
Tssr127595 14 20145860 to 20145906 46 - TSS region transcription start site region 127595
Cpgi6197 14 20180796 to 20181076 280 CpG island CpG island 6197
Cpgi6198 14 20181296 to 20182094 798 CpG island CpG island 6198
Tssr127596 14 20181773 to 20181790 17 - TSS region transcription start site region 127596
Tssr127597 14 20181808 to 20181809 1 - TSS region transcription start site region 127597
Gm48394 14 20199702 to 20199954 252 - pseudogene predicted gene, 48394
Gm24912 14 20199996 to 20200112 116 - snoRNA gene predicted gene, 24912
Gm48395 14 20215502 to 20221425 5923 + lincRNA gene predicted gene, 48395
Gm2048 14 20249415 to 20260932 11517 - pseudogene predicted gene 2048
Kcnk16 14 20262756 to 20269162 6406 - protein coding gene potassium channel, subfamily K, member 16
Tssr127598 14 20263433 to 20263460 27 - TSS region transcription start site region 127598
Tssr127599 14 20269173 to 20269244 71 - TSS region transcription start site region 127599
Tssr127600 14 20269253 to 20269275 22 - TSS region transcription start site region 127600
Nudt13 14 20294697 to 20317578 22881 + protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 13
Tssr124377 14 20294706 to 20294745 39 + TSS region transcription start site region 124377
Tssr124378 14 20306777 to 20306779 2 + TSS region transcription start site region 124378
Ecd 14 20319859 to 20348121 28262 - protein coding gene ecdysoneless cell cycle regulator
Cpgi6199 14 20347871 to 20348496 625 CpG island CpG island 6199
Tssr127601 14 20348019 to 20348033 14 - TSS region transcription start site region 127601
Tssr127602 14 20348040 to 20348101 61 - TSS region transcription start site region 127602
Tssr124379 14 20348159 to 20348244 85 + TSS region transcription start site region 124379
Fam149b 14 20348162 to 20383491 35329 + protein coding gene family with sequence similarity 149, member B
Tssr124380 14 20348303 to 20348325 22 + TSS region transcription start site region 124380
Gm30054 14 20365964 to 20369315 3351 - antisense lncRNA gene predicted gene, 30054
Tssr127603 14 20378840 to 20378886 46 - TSS region transcription start site region 127603
Dnajc9 14 20384638 to 20388910 4272 - protein coding gene DnaJ heat shock protein family (Hsp40) member C9
Cpgi6200 14 20388368 to 20389247 879 CpG island CpG island 6200
Tssr127604 14 20388822 to 20388912 90 - TSS region transcription start site region 127604
Tssr127605 14 20388913 to 20388927 14 - TSS region transcription start site region 127605
Mrps16 14 20391231 to 20393555 2324 - protein coding gene mitochondrial ribosomal protein S16
Cpgi6201 14 20393145 to 20393966 821 CpG island CpG island 6201
Tssr127606 14 20393445 to 20393463 18 - TSS region transcription start site region 127606
Tssr127607 14 20393473 to 20393572 99 - TSS region transcription start site region 127607
Tssr127608 14 20393603 to 20393643 40 - TSS region transcription start site region 127608
Cfap70 14 20394193 to 20452226 58033 - protein coding gene cilia and flagella associated protein 70
Tssr127609 14 20395064 to 20395090 26 - TSS region transcription start site region 127609
Tssr127610 14 20397348 to 20397358 10 - TSS region transcription start site region 127610
7330404K18Rik 14 20398359 to 20398930 571 + antisense lncRNA gene RIKEN cDNA 7330404K18 gene
Cpgi6202 14 20442389 to 20442588 199 CpG island CpG island 6202
Tssr127611 14 20452176 to 20452183 7 - TSS region transcription start site region 127611
Tssr127612 14 20452187 to 20452208 21 - TSS region transcription start site region 127612
Tssr127613 14 20452217 to 20452241 24 - TSS region transcription start site region 127613
Anxa7 14 20455261 to 20480133 24872 - protein coding gene annexin A7
Tssr127614 14 20456283 to 20456292 9 - TSS region transcription start site region 127614
Tssr127615 14 20471444 to 20471461 17 - TSS region transcription start site region 127615
Tssr127616 14 20471533 to 20471563 30 - TSS region transcription start site region 127616
Tssr127617 14 20473305 to 20473345 40 - TSS region transcription start site region 127617
Cpgi6203 14 20479536 to 20480111 575 CpG island CpG island 6203
Tssr127618 14 20479862 to 20479869 7 - TSS region transcription start site region 127618
Tssr127619 14 20479907 to 20479914 7 - TSS region transcription start site region 127619
Tssr127620 14 20479929 to 20479968 39 - TSS region transcription start site region 127620
Tssr127621 14 20480076 to 20480079 3 - TSS region transcription start site region 127621
Tssr127622 14 20480106 to 20480114 8 - TSS region transcription start site region 127622
Mss51 14 20482867 to 20496901 14034 - protein coding gene MSS51 mitochondrial translational activator
Tssr127623 14 20496670 to 20496686 16 - TSS region transcription start site region 127623
Tssr127624 14 20496710 to 20496724 14 - TSS region transcription start site region 127624
Tssr127625 14 20496729 to 20496736 7 - TSS region transcription start site region 127625
Tssr127626 14 20496780 to 20496787 7 - TSS region transcription start site region 127626
Ppp3cb 14 20499364 to 20546573 47209 - protein coding gene protein phosphatase 3, catalytic subunit, beta isoform
Tssr127627 14 20501087 to 20501100 13 - TSS region transcription start site region 127627
Tssr127628 14 20531845 to 20531867 22 - TSS region transcription start site region 127628
Tssr127629 14 20538177 to 20538181 4 - TSS region transcription start site region 127629
Tssr127630 14 20544687 to 20544697 10 - TSS region transcription start site region 127630
2510010E17Rik 14 20545309 to 20546166 857 unclassified gene RIKEN cDNA 2510010E17 gene
Cpgi6204 14 20545709 to 20546774 1065 CpG island CpG island 6204
Tssr124381 14 20546157 to 20546161 4 + TSS region transcription start site region 124381
1810062O18Rik 14 20546293 to 20570680 24387 + antisense lncRNA gene RIKEN cDNA 1810062O18 gene
Tssr127631 14 20546462 to 20546481 19 - TSS region transcription start site region 127631
Tssr127632 14 20546482 to 20546485 3 - TSS region transcription start site region 127632
Tssr127633 14 20546517 to 20546582 65 - TSS region transcription start site region 127633
Usp54 14 20548912 to 20641063 92151 - protein coding gene ubiquitin specific peptidase 54
Tssr127634 14 20571205 to 20571210 5 - TSS region transcription start site region 127634
Tssr127635 14 20607871 to 20607900 29 - TSS region transcription start site region 127635
Tssr127636 14 20610279 to 20610305 26 - TSS region transcription start site region 127636
Tssr127637 14 20615514 to 20615520 6 - TSS region transcription start site region 127637
Tssr127638 14 20618313 to 20618334 21 - TSS region transcription start site region 127638
Tssr127639 14 20618339 to 20618365 26 - TSS region transcription start site region 127639
Tssr127640 14 20631355 to 20631368 13 - TSS region transcription start site region 127640
Tssr127641 14 20631731 to 20631735 4 - TSS region transcription start site region 127641
Cpgi6205 14 20640333 to 20641418 1085 CpG island CpG island 6205
Tssr127642 14 20640932 to 20640949 17 - TSS region transcription start site region 127642
Tssr127643 14 20640954 to 20640986 32 - TSS region transcription start site region 127643
Tssr124382 14 20640994 to 20641021 27 + TSS region transcription start site region 124382
2810402E24Rik 14 20641009 to 20644048 3039 + antisense lncRNA gene RIKEN cDNA 2810402E24 gene
Tssr124383 14 20641025 to 20641044 19 + TSS region transcription start site region 124383
Tssr124384 14 20641061 to 20641089 28 + TSS region transcription start site region 124384