Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:16478389-18780355

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105 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rarb 14 16430839 to 16819156 388317 - protein coding gene retinoic acid receptor, beta
Prdt6 14 16430839 to 18038090 1607251 QTL prion disease incubation time 6
Tssr127513 14 16491083 to 16491095 12 - TSS region transcription start site region 127513
D14Mit98.1 14 16523604 to 16523742 138 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 98.1
Appd2 14 16523711 to 30392905 13869194 QTL APP associated premature death 2
D14Mit98 14 16523711 to 16523860 149 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 98
Cpgi6183 14 16575029 to 16575966 937 CpG island CpG island 6183
Tssr127514 14 16575035 to 16575061 26 - TSS region transcription start site region 127514
Tssr127515 14 16575157 to 16575170 13 - TSS region transcription start site region 127515
Tssr127516 14 16575343 to 16575361 18 - TSS region transcription start site region 127516
Tssr127517 14 16575364 to 16575412 48 - TSS region transcription start site region 127517
Tssr127518 14 16575456 to 16575501 45 - TSS region transcription start site region 127518
Tssr127519 14 16575508 to 16575529 21 - TSS region transcription start site region 127519
Tssr127520 14 16575538 to 16575559 21 - TSS region transcription start site region 127520
Gm48162 14 16575601 to 16580459 4858 + antisense lncRNA gene predicted gene, 48162
Tssr124336 14 16575629 to 16575634 5 + TSS region transcription start site region 124336
D14Mit78 14 16575929 to 16576061 132 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 78
Gm19061 14 16633191 to 16634951 1760 + pseudogene predicted gene, 19061
Tssr124337 14 16946647 to 16946650 3 + TSS region transcription start site region 124337
Tpi-rs9 14 16946659 to 16947433 774 + pseudogene triosephosphate isomerase related sequence 9
Gm18078 14 16953606 to 16954197 591 + pseudogene predicted gene, 18078
Gm18927 14 17105561 to 17105876 315 + pseudogene predicted gene, 18927
Gm48312 14 17121503 to 17122100 597 + pseudogene predicted gene, 48312
Cpgi6184 14 17172484 to 17173190 706 CpG island CpG island 6184
Tssr127521 14 17172856 to 17172880 24 - TSS region transcription start site region 127521
Tssr127522 14 17172882 to 17172910 28 - TSS region transcription start site region 127522
D14Mit99 14 17255111 to 17255232 121 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 99
Gm32121 14 17330675 to 17407786 77111 - lncRNA gene predicted gene, 32121
Gm32187 14 17517932 to 17527015 9083 - lncRNA gene predicted gene, 32187
Gm32269 14 17598389 to 17660355 61966 - lncRNA gene predicted gene, 32269
Cpgi6185 14 17633027 to 17633244 217 CpG island CpG island 6185
Tssr124338 14 17659199 to 17659216 17 + TSS region transcription start site region 124338
Tssr124339 14 17659227 to 17659238 11 + TSS region transcription start site region 124339
Tssr124340 14 17659249 to 17659277 28 + TSS region transcription start site region 124340
Tssr124341 14 17659278 to 17659296 18 + TSS region transcription start site region 124341
Tssr4255 14 17659576 to 17659582 6 + TSS region transcription start site region 4255
Tssr124342 14 17659763 to 17659779 16 + TSS region transcription start site region 124342
Cpgi6186 14 17659787 to 17661454 1667 CpG island CpG island 6186
Tssr124343 14 17659793 to 17659802 9 + TSS region transcription start site region 124343
Tssr124344 14 17659807 to 17659818 11 + TSS region transcription start site region 124344
Thrb 14 17660261 to 18038090 377829 + protein coding gene thyroid hormone receptor beta
Tssr124345 14 17660872 to 17660950 78 + TSS region transcription start site region 124345
Tssr124346 14 17660956 to 17660963 7 + TSS region transcription start site region 124346
Tssr124347 14 17660966 to 17660980 14 + TSS region transcription start site region 124347
D14Mit220 14 17698811 to 17699105 294 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 220
Tssr124348 14 17727396 to 17727401 5 + TSS region transcription start site region 124348
Gm48320 14 17770649 to 17771122 473 - pseudogene predicted gene, 48320
Tssr124349 14 17784648 to 17784674 26 + TSS region transcription start site region 124349
Tssr4256 14 17847410 to 17847430 20 + TSS region transcription start site region 4256
Gm24140 14 17884808 to 17885133 325 - unclassified non-coding RNA gene predicted gene, 24140
Gm48321 14 17931138 to 18021909 90771 - antisense lncRNA gene predicted gene, 48321
Tssr124350 14 17945212 to 17945220 8 + TSS region transcription start site region 124350
Tssr124351 14 17962801 to 17962821 20 + TSS region transcription start site region 124351
Tssr124352 14 17981506 to 17981509 3 + TSS region transcription start site region 124352
Tssr124353 14 17981633 to 17981639 6 + TSS region transcription start site region 124353
Tssr124354 14 17981813 to 17981820 7 + TSS region transcription start site region 124354
Tssr124355 14 17981867 to 17981876 9 + TSS region transcription start site region 124355
Tssr124356 14 17981888 to 17981900 12 + TSS region transcription start site region 124356
Tssr127523 14 18021888 to 18021914 26 - TSS region transcription start site region 127523
Tssr124357 14 18030722 to 18030726 4 + TSS region transcription start site region 124357
Tssr124358 14 18034343 to 18034347 4 + TSS region transcription start site region 124358
Gm27851 14 18060275 to 18060337 62 + snRNA gene predicted gene, 27851
Gm19290 14 18095724 to 18096034 310 + pseudogene predicted gene, 19290
Gm6773 14 18099183 to 18100060 877 - pseudogene predicted gene 6773
Gm48481 14 18189040 to 18189554 514 + pseudogene predicted gene, 48481
Gm44469 14 18200675 to 18200753 78 + miRNA gene predicted gene, 44469
Nr1d2 14 18204056 to 18239106 35050 - protein coding gene nuclear receptor subfamily 1, group D, member 2
Cpgi6187 14 18238128 to 18239573 1445 CpG island CpG island 6187
Tssr127524 14 18238952 to 18239036 84 - TSS region transcription start site region 127524
Tssr127525 14 18239053 to 18239098 45 - TSS region transcription start site region 127525
Gm7084 14 18242422 to 18243253 831 + pseudogene predicted gene 7084
Cpgi6188 14 18242788 to 18242956 168 CpG island CpG island 6188
Rpl15 14 18267823 to 18271024 3201 - protein coding gene ribosomal protein L15
Cpgi6189 14 18270064 to 18271551 1487 CpG island CpG island 6189
Tssr127526 14 18270953 to 18270991 38 - TSS region transcription start site region 127526
Tssr127527 14 18271064 to 18271075 11 - TSS region transcription start site region 127527
Tssr124359 14 18271122 to 18271178 56 + TSS region transcription start site region 124359
Nkiras1 14 18271136 to 18284003 12867 + protein coding gene NFKB inhibitor interacting Ras-like protein 1
Tssr127528 14 18271191 to 18271205 14 - TSS region transcription start site region 127528
Tssr124360 14 18271201 to 18271290 89 + TSS region transcription start site region 124360
Tssr124361 14 18271308 to 18271321 13 + TSS region transcription start site region 124361
Ube2e1 14 18282726 to 18331844 49118 - protein coding gene ubiquitin-conjugating enzyme E2E 1
Gm41098 14 18297678 to 18309834 12156 - lncRNA gene predicted gene, 41098
Cpgi6190 14 18326967 to 18327429 462 CpG island CpG island 6190
Tssr124362 14 18330038 to 18330040 2 + TSS region transcription start site region 124362
Cpgi6191 14 18330813 to 18332107 1294 CpG island CpG island 6191
Tssr127529 14 18331099 to 18331113 14 - TSS region transcription start site region 127529
Tssr4257 14 18331148 to 18331170 22 + TSS region transcription start site region 4257
Tssr127530 14 18331737 to 18331751 14 - TSS region transcription start site region 127530
Tssr127531 14 18331768 to 18331836 68 - TSS region transcription start site region 127531
Tssr127532 14 18331855 to 18331862 7 - TSS region transcription start site region 127532
Tssr127533 14 18332045 to 18332064 19 - TSS region transcription start site region 127533
Gm22350 14 18445875 to 18446030 155 + snRNA gene predicted gene, 22350
Gm32587 14 18463610 to 18555034 91424 + lncRNA gene predicted gene, 32587
Gm38620 14 18494159 to 18504615 10456 + lncRNA gene predicted gene, 38620
Tssr124363 14 18531323 to 18531354 31 + TSS region transcription start site region 124363
Gm6781 14 18531363 to 18532604 1241 + pseudogene predicted gene 6781
Gm4939 14 18543808 to 18545132 1324 - pseudogene predicted gene 4939
Tssr127534 14 18545317 to 18545330 13 - TSS region transcription start site region 127534
Tssr4258 14 18545338 to 18545368 30 - TSS region transcription start site region 4258
Ube2e2 14 18573575 to 18894267 320692 - protein coding gene ubiquitin-conjugating enzyme E2E 2
Tssr127535 14 18665140 to 18665156 16 - TSS region transcription start site region 127535
6820402I19Rik 14 18699826 to 18701946 2120 unclassified gene RIKEN cDNA 6820402I19 gene
Tssr127536 14 18703929 to 18703933 4 - TSS region transcription start site region 127536
Tssr127537 14 18709647 to 18709675 28 - TSS region transcription start site region 127537