Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:13580813-23082107

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910 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
sky 14 12481829 to 21012571 8530742 heritable phenotypic marker severe kyphosis
Synpr 14 13284780 to 13615469 330689 + protein coding gene synaptoporin
Tssr124295 14 13588839 to 13588841 2 + TSS region transcription start site region 124295
Tssr127478 14 13597107 to 13597110 3 - TSS region transcription start site region 127478
Tssr124296 14 13670867 to 13670919 52 + TSS region transcription start site region 124296
Sntn 14 13670876 to 13683148 12272 + protein coding gene sentan, cilia apical structure protein
Tssr124297 14 13670931 to 13670940 9 + TSS region transcription start site region 124297
Rpl19-ps4 14 13777817 to 13778441 624 - pseudogene ribosomal protein L19, pseudogene 4
Gm27506 14 13778072 to 13778151 79 - miRNA gene predicted gene, 27506
Tssr127479 14 13778461 to 13778473 12 - TSS region transcription start site region 127479
Gm3637 14 13791029 to 13791823 794 - pseudogene predicted gene 3637
Gm281 14 13828428 to 13914521 86093 - protein coding gene predicted gene 281
Gm25964 14 13868143 to 13868239 96 + snRNA gene predicted gene, 25964
D14Mit49 14 13888172 to 13888421 249 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 49
Cpgi6173 14 13901636 to 13901876 240 CpG island CpG island 6173
Gm18576 14 13901842 to 13902464 622 + pseudogene predicted gene, 18576
Tssr127480 14 13906482 to 13906525 43 - TSS region transcription start site region 127480
Tssr127481 14 13914464 to 13914478 14 - TSS region transcription start site region 127481
Tssr127482 14 13914493 to 13914509 16 - TSS region transcription start site region 127482
Tssr124298 14 13932587 to 13932593 6 + TSS region transcription start site region 124298
Gm11100 14 13935386 to 13948495 13109 + unclassified non-coding RNA gene predicted gene 11100
Thoc7 14 13949012 to 13961847 12835 - protein coding gene THO complex 7
Tssr127483 14 13955026 to 13955029 3 - TSS region transcription start site region 127483
Cpgi6174 14 13960650 to 13961843 1193 CpG island CpG island 6174
Tssr127484 14 13961186 to 13961199 13 - TSS region transcription start site region 127484
Tssr127485 14 13961202 to 13961278 76 - TSS region transcription start site region 127485
Tssr124299 14 13961257 to 13961286 29 + TSS region transcription start site region 124299
Tssr127486 14 13961292 to 13961303 11 - TSS region transcription start site region 127486
Tssr127487 14 13961378 to 13961442 64 - TSS region transcription start site region 127487
Atxn7 14 13961440 to 14107302 145862 + protein coding gene ataxin 7
Tssr127488 14 13961626 to 13961640 14 - TSS region transcription start site region 127488
Tssr127489 14 13961845 to 13961858 13 - TSS region transcription start site region 127489
Tssr127490 14 13961859 to 13961887 28 - TSS region transcription start site region 127490
Tssr124300 14 13976147 to 13976156 9 + TSS region transcription start site region 124300
Tssr124301 14 13999993 to 13999996 3 + TSS region transcription start site region 124301
Cpgi6175 14 14012217 to 14013707 1490 CpG island CpG island 6175
Tssr124302 14 14012627 to 14012693 66 + TSS region transcription start site region 124302
Tssr124303 14 14013125 to 14013195 70 + TSS region transcription start site region 124303
Tssr124304 14 14013529 to 14013574 45 + TSS region transcription start site region 124304
Gm31222 14 14066982 to 14072119 5137 + lncRNA gene predicted gene, 31222
Tssr124305 14 14067870 to 14067885 15 + TSS region transcription start site region 124305
Tssr127491 14 14101440 to 14101459 19 - TSS region transcription start site region 127491
Psmd6 14 14112185 to 14120904 8719 - protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 6
Cpgi6176 14 14120268 to 14121107 839 CpG island CpG island 6176
Tssr127492 14 14120904 to 14120963 59 - TSS region transcription start site region 127492
Gm48797 14 14123570 to 14123975 405 + pseudogene predicted gene, 48797
Olfr720 14 14175130 to 14176080 950 - protein coding gene olfactory receptor 720
Csnk2a1-ps1 14 14197306 to 14198464 1158 + pseudogene casein kinase 2, alpha 1 polypeptide, pseudogene 1
Gm48841 14 14254663 to 14257503 2840 - pseudogene predicted gene, 48841
Gm48852 14 14258286 to 14258568 282 + pseudogene predicted gene, 48852
Gm3895 14 14259338 to 14259638 300 - pseudogene predicted gene 3895
Gm48857 14 14292405 to 14294676 2271 - lincRNA gene predicted gene, 48857
Tssr127493 14 14294654 to 14294689 35 - TSS region transcription start site region 127493
Gm48859 14 14302683 to 14303111 428 - pseudogene predicted gene, 48859
Gm48860 14 14328004 to 14347264 19260 - antisense lncRNA gene predicted gene, 48860
Olfr31 14 14328113 to 14329066 953 + protein coding gene olfactory receptor 31
Cpgi6177 14 14345342 to 14347064 1722 CpG island CpG island 6177
Il3ra 14 14346001 to 14355493 9492 + protein coding gene interleukin 3 receptor, alpha chain
Tssr124306 14 14346400 to 14346477 77 + TSS region transcription start site region 124306
Tssr124307 14 14346581 to 14346615 34 + TSS region transcription start site region 124307
Tssr124308 14 14346618 to 14346627 9 + TSS region transcription start site region 124308
Tssr124309 14 14347105 to 14347128 23 + TSS region transcription start site region 124309
Tssr124310 14 14349961 to 14349975 14 + TSS region transcription start site region 124310
Gm6734 14 14371655 to 14372253 598 + pseudogene predicted gene 6734
Olfr721-ps1 14 14407224 to 14408198 974 + pseudogene olfactory receptor 721, pseudogene 1
Tssr127494 14 14423220 to 14423231 11 - TSS region transcription start site region 127494
Gm47654 14 14429177 to 14430245 1068 + pseudogene predicted gene, 47654
Gm21063 14 14437740 to 14438708 968 + pseudogene predicted gene, 21063
Gm8483 14 14447661 to 14448944 1283 - pseudogene predicted gene 8483
Gm47678 14 14585369 to 14589216 3847 - pseudogene predicted gene, 47678
Gm47685 14 14589946 to 14590314 368 + pseudogene predicted gene, 47685
Gm19018 14 14659108 to 14659879 771 + pseudogene predicted gene, 19018
Tssr124311 14 14686399 to 14686432 33 + TSS region transcription start site region 124311
Tssr124312 14 14686798 to 14686837 39 + TSS region transcription start site region 124312
Cpgi6178 14 14702497 to 14703850 1353 CpG island CpG island 6178
Slc4a7 14 14703011 to 14799944 96933 + protein coding gene solute carrier family 4, sodium bicarbonate cotransporter, member 7
Tssr124313 14 14703042 to 14703073 31 + TSS region transcription start site region 124313
Tssr4251 14 14703089 to 14703092 3 + TSS region transcription start site region 4251
Tssr124314 14 14704057 to 14704061 4 + TSS region transcription start site region 124314
Tssr124315 14 14716976 to 14716980 4 + TSS region transcription start site region 124315
Tssr124316 14 14718775 to 14718789 14 + TSS region transcription start site region 124316
Tssr124317 14 14718826 to 14718829 3 + TSS region transcription start site region 124317
Tssr124318 14 14743444 to 14743506 62 + TSS region transcription start site region 124318
Tssr124319 14 14748312 to 14748318 6 + TSS region transcription start site region 124319
Tssr127495 14 14764554 to 14764563 9 - TSS region transcription start site region 127495
Tssr127496 14 14781325 to 14781351 26 - TSS region transcription start site region 127496
Nek10 14 14803580 to 15012059 208479 + protein coding gene NIMA (never in mitosis gene a)- related kinase 10
Tssr124320 14 14804133 to 14804144 11 + TSS region transcription start site region 124320
Tssr4252 14 14893408 to 14893411 3 + TSS region transcription start site region 4252
Tssr124321 14 14963539 to 14963543 4 + TSS region transcription start site region 124321
Gm46441 14 15011662 to 15027397 15735 - lncRNA gene predicted gene, 46441
Gm18142 14 15040807 to 15042169 1362 - pseudogene predicted gene, 18142
Gm31517 14 15053321 to 15065207 11886 - lincRNA gene predicted gene, 31517
Gm47743 14 15063032 to 15065425 2393 + unclassified gene predicted gene, 47743
D14Mit48 14 15081581 to 15081699 118 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 48
4921522A10Rik 14 15104124 to 15110333 6209 - lincRNA gene RIKEN cDNA 4921522A10 gene
Tssr124322 14 15110446 to 15110451 5 + TSS region transcription start site region 124322
Gm47756 14 15118313 to 15120977 2664 - unclassified gene predicted gene, 47756
Tssr4253 14 15130583 to 15130587 4 - TSS region transcription start site region 4253
Tssr124323 14 15148779 to 15148806 27 + TSS region transcription start site region 124323
Gm47758 14 15154891 to 15157213 2322 - lincRNA gene predicted gene, 47758
Gm47759 14 15223952 to 15226166 2214 - pseudogene predicted gene, 47759
D14Sh1 14 15260650 to 15261419 769 DNA segment DNA segment, Chr 14, Steve Hardies 1
Gm47763 14 15298523 to 15298861 338 - pseudogene predicted gene, 47763
Gm31658 14 15307123 to 15332420 25297 + lncRNA gene predicted gene, 31658
Gm31577 14 15310106 to 15321883 11777 - lincRNA gene predicted gene, 31577
Lrrc3b 14 15357515 to 15438987 81472 - protein coding gene leucine rich repeat containing 3B
Tssr124324 14 15358177 to 15358178 1 + TSS region transcription start site region 124324
B230110C06Rik 14 15437579 to 15451925 14346 + lincRNA gene RIKEN cDNA B230110C06 gene
Tssr124325 14 15437581 to 15437592 11 + TSS region transcription start site region 124325
Tssr124326 14 15437647 to 15437677 30 + TSS region transcription start site region 124326
Cpgi6179 14 15438227 to 15439308 1081 CpG island CpG island 6179
Tssr127497 14 15438743 to 15438767 24 - TSS region transcription start site region 127497
Tssr127498 14 15438819 to 15438833 14 - TSS region transcription start site region 127498
Tssr127499 14 15438839 to 15438848 9 - TSS region transcription start site region 127499
Tssr127500 14 15438869 to 15438876 7 - TSS region transcription start site region 127500
Tssr127501 14 15438958 to 15438963 5 - TSS region transcription start site region 127501
Tssr127502 14 15438974 to 15439002 28 - TSS region transcription start site region 127502
Gm10403 14 15456331 to 15458041 1710 + unclassified non-coding RNA gene predicted gene 10403
Gm47779 14 15601874 to 15602023 149 - pseudogene predicted gene, 47779
D14Dcr15 14 15673887 to 15673988 101 DNA segment DNA Segment, Chr 14, Derry C. Roopenian 15
Gm47782 14 15697956 to 15911315 213359 - lincRNA gene predicted gene, 47782
Gm31804 14 15775104 to 15791801 16697 + lincRNA gene predicted gene, 31804
Gm47780 14 15876628 to 15879459 2831 + lincRNA gene predicted gene, 47780
Tssr124327 14 15910429 to 15910433 4 + TSS region transcription start site region 124327
Gm8514 14 15910518 to 15912163 1645 + pseudogene predicted gene 8514
Tssr127503 14 15934899 to 15934909 10 - TSS region transcription start site region 127503
1700062C10Rik 14 16000816 to 16037265 36449 - lincRNA gene RIKEN cDNA 1700062C10 gene
Gm8517 14 16171397 to 16172608 1211 + pseudogene predicted gene 8517
Tssr127504 14 16172446 to 16172465 19 - TSS region transcription start site region 127504
Tssr127505 14 16172466 to 16172488 22 - TSS region transcription start site region 127505
Tssr127506 14 16172492 to 16172509 17 - TSS region transcription start site region 127506
Tssr127507 14 16173320 to 16173321 1 - TSS region transcription start site region 127507
Tssr124328 14 16173680 to 16173696 16 + TSS region transcription start site region 124328
Tssr124329 14 16224993 to 16224998 5 + TSS region transcription start site region 124329
Rpl31-ps3 14 16225023 to 16225370 347 + pseudogene ribosomal protein L31, pseudogene 3
Oxsm 14 16238659 to 16249808 11149 - protein coding gene 3-oxoacyl-ACP synthase, mitochondrial
Cpgi6180 14 16242997 to 16243554 557 CpG island CpG island 6180
Tssr127508 14 16243309 to 16243344 35 - TSS region transcription start site region 127508
Gm47794 14 16243351 to 16245091 1740 + antisense lncRNA gene predicted gene, 47794
Cpgi6181 14 16249106 to 16249859 753 CpG island CpG island 6181
Tssr127509 14 16249154 to 16249182 28 - TSS region transcription start site region 127509
Tssr124330 14 16249259 to 16249366 107 + TSS region transcription start site region 124330
Ngly1 14 16249314 to 16311926 62612 + protein coding gene N-glycanase 1
Tssr127510 14 16249675 to 16249689 14 - TSS region transcription start site region 127510
Tssr124331 14 16253880 to 16253882 2 + TSS region transcription start site region 124331
5430414B19Rik 14 16271089 to 16271838 749 + sense intronic lncRNA gene RIKEN cDNA 5430414B19 gene
Gm47797 14 16273995 to 16274321 326 + unclassified gene predicted gene, 47797
Gm47798 14 16304511 to 16308325 3814 + sense intronic lncRNA gene predicted gene, 47798
Gm48163 14 16336846 to 16366268 29422 - antisense lncRNA gene predicted gene, 48163
Cpgi6182 14 16364513 to 16366335 1822 CpG island CpG island 6182
Tssr124332 14 16365171 to 16365194 23 + TSS region transcription start site region 124332
Top2b 14 16365206 to 16430787 65581 + protein coding gene topoisomerase (DNA) II beta
D14Mit244 14 16380024 to 16380164 140 DNA segment DNA Segment, Chr 14, Massachusetts Institute of Technology-244
Tssr124333 14 16388388 to 16388401 13 + TSS region transcription start site region 124333
Tssr124334 14 16398724 to 16398730 6 + TSS region transcription start site region 124334
Tssr124335 14 16410246 to 16410254 8 + TSS region transcription start site region 124335
Prdt6 14 16430839 to 18038090 1607251 QTL prion disease incubation time 6
Rarb 14 16430839 to 16819156 388317 - protein coding gene retinoic acid receptor, beta
Tssr127511 14 16447089 to 16447105 16 - TSS region transcription start site region 127511
Gm46442 14 16451704 to 16452228 524 - pseudogene predicted gene, 46442
Tssr4254 14 16457173 to 16457175 2 + TSS region transcription start site region 4254
Tssr127512 14 16466709 to 16466712 3 - TSS region transcription start site region 127512
Tssr127513 14 16491083 to 16491095 12 - TSS region transcription start site region 127513
D14Mit98.1 14 16523604 to 16523742 138 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 98.1
D14Mit98 14 16523711 to 16523860 149 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 98
Appd2 14 16523711 to 30392905 13869194 QTL APP associated premature death 2
Cpgi6183 14 16575029 to 16575966 937 CpG island CpG island 6183
Tssr127514 14 16575035 to 16575061 26 - TSS region transcription start site region 127514
Tssr127515 14 16575157 to 16575170 13 - TSS region transcription start site region 127515
Tssr127516 14 16575343 to 16575361 18 - TSS region transcription start site region 127516
Tssr127517 14 16575364 to 16575412 48 - TSS region transcription start site region 127517
Tssr127518 14 16575456 to 16575501 45 - TSS region transcription start site region 127518
Tssr127519 14 16575508 to 16575529 21 - TSS region transcription start site region 127519
Tssr127520 14 16575538 to 16575559 21 - TSS region transcription start site region 127520
Gm48162 14 16575601 to 16580459 4858 + antisense lncRNA gene predicted gene, 48162
Tssr124336 14 16575629 to 16575634 5 + TSS region transcription start site region 124336
D14Mit78 14 16575929 to 16576061 132 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 78
Gm19061 14 16633191 to 16634951 1760 + pseudogene predicted gene, 19061
Tssr124337 14 16946647 to 16946650 3 + TSS region transcription start site region 124337
Tpi-rs9 14 16946659 to 16947433 774 + pseudogene triosephosphate isomerase related sequence 9
Gm18078 14 16953606 to 16954197 591 + pseudogene predicted gene, 18078
Gm18927 14 17105561 to 17105876 315 + pseudogene predicted gene, 18927
Gm48312 14 17121503 to 17122100 597 + pseudogene predicted gene, 48312
Cpgi6184 14 17172484 to 17173190 706 CpG island CpG island 6184
Tssr127521 14 17172856 to 17172880 24 - TSS region transcription start site region 127521
Tssr127522 14 17172882 to 17172910 28 - TSS region transcription start site region 127522
D14Mit99 14 17255111 to 17255232 121 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 99
Gm32121 14 17330675 to 17407786 77111 - lncRNA gene predicted gene, 32121
Gm32187 14 17517932 to 17527015 9083 - lncRNA gene predicted gene, 32187
Gm32269 14 17598389 to 17660355 61966 - lncRNA gene predicted gene, 32269
Cpgi6185 14 17633027 to 17633244 217 CpG island CpG island 6185
Tssr124338 14 17659199 to 17659216 17 + TSS region transcription start site region 124338
Tssr124339 14 17659227 to 17659238 11 + TSS region transcription start site region 124339
Tssr124340 14 17659249 to 17659277 28 + TSS region transcription start site region 124340
Tssr124341 14 17659278 to 17659296 18 + TSS region transcription start site region 124341
Tssr4255 14 17659576 to 17659582 6 + TSS region transcription start site region 4255
Tssr124342 14 17659763 to 17659779 16 + TSS region transcription start site region 124342
Cpgi6186 14 17659787 to 17661454 1667 CpG island CpG island 6186
Tssr124343 14 17659793 to 17659802 9 + TSS region transcription start site region 124343