Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:115056035-117136300

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tbqt5 13 103205109 to 116906680 13701571 QTL tibia bone quality traits 5
Itga1 13 114958079 to 115101964 143885 - protein coding gene integrin alpha 1
Gm49395 13 115035273 to 115101921 66648 - protein coding gene predicted gene, 49395
Tssr124148 13 115056521 to 115056525 4 - TSS region transcription start site region 124148
Pelo 13 115088355 to 115090158 1803 - protein coding gene pelota mRNA surveillance and ribosome rescue factor
Cpgi6127 13 115089384 to 115090721 1337 CpG island CpG island 6127
Tssr121209 13 115089466 to 115089486 20 + TSS region transcription start site region 121209
Tssr121210 13 115089492 to 115089516 24 + TSS region transcription start site region 121210
Gm10734 13 115089501 to 115090987 1486 + antisense lncRNA gene predicted gene 10734
Tssr124149 13 115090123 to 115090241 118 - TSS region transcription start site region 124149
Cpgi6128 13 115101400 to 115102172 772 CpG island CpG island 6128
Tssr124150 13 115101535 to 115101544 9 - TSS region transcription start site region 124150
Tssr124151 13 115101558 to 115101573 15 - TSS region transcription start site region 124151
Tssr124152 13 115101618 to 115101656 38 - TSS region transcription start site region 124152
Tssr124153 13 115101679 to 115101715 36 - TSS region transcription start site region 124153
Tssr124154 13 115101717 to 115101744 27 - TSS region transcription start site region 124154
Tssr124155 13 115101754 to 115101778 24 - TSS region transcription start site region 124155
Tssr124156 13 115101795 to 115101802 7 - TSS region transcription start site region 124156
Tssr124157 13 115101804 to 115101824 20 - TSS region transcription start site region 124157
Tssr124158 13 115101872 to 115101890 18 - TSS region transcription start site region 124158
Tssr124159 13 115101891 to 115101907 16 - TSS region transcription start site region 124159
Tssr124160 13 115101909 to 115101984 75 - TSS region transcription start site region 124160
Tssr124161 13 115102138 to 115102141 3 - TSS region transcription start site region 124161
Gm41075 13 115109830 to 115135838 26008 + lncRNA gene predicted gene, 41075
Gm25985 13 115116127 to 115116233 106 + snRNA gene predicted gene, 25985
D13Mit171 13 115156429 to 115156577 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 171
Gm18759 13 115163608 to 115164820 1212 - pseudogene predicted gene, 18759
Gm47891 13 115282201 to 115282675 474 + pseudogene predicted gene, 47891
D13Mit214 13 115354396 to 115354587 191 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 214
Gm6035 13 115528556 to 115529772 1216 - pseudogene predicted gene 6035
Tssr124162 13 115529793 to 115529800 7 - TSS region transcription start site region 124162
D13Mit151 13 115551769 to 115551891 122 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 151
Gm47892 13 115719304 to 115719499 195 - pseudogene predicted gene, 47892
Gm18135 13 115770936 to 115771453 517 + pseudogene predicted gene, 18135
Gm47893 13 116096035 to 116096300 265 + pseudogene predicted gene, 47893
Rpl34-ps2 13 116153781 to 116154134 353 + pseudogene ribosomal protein L34, pseudogene 2
Cpgi6129 13 116293895 to 116294226 331 CpG island CpG island 6129
Cpgi6130 13 116297136 to 116297635 499 CpG island CpG island 6130
Isl1 13 116298281 to 116309689 11408 - protein coding gene ISL1 transcription factor, LIM/homeodomain
Cpgi6131 13 116303024 to 116303484 460 CpG island CpG island 6131
Cpgi6132 13 116305094 to 116305515 421 CpG island CpG island 6132
Cpgi6133 13 116309331 to 116310451 1120 CpG island CpG island 6133
Tssr124163 13 116309639 to 116309699 60 - TSS region transcription start site region 124163
Tssr121211 13 116309823 to 116309841 18 + TSS region transcription start site region 121211
Gm29764 13 116330763 to 116331538 775 - pseudogene predicted gene, 29764
Gm47912 13 116361198 to 116361694 496 - pseudogene predicted gene, 47912
Mdq5 13 116444425 to 116444425 0 QTL mammary ductal QTL 5
Gm47914 13 116558311 to 116677705 119394 - lincRNA gene predicted gene, 47914
Gm47913 13 116651448 to 116663591 12143 - lincRNA gene predicted gene, 47913
Gm23198 13 116675878 to 116675968 90 + rRNA gene predicted gene, 23198
Cpgi6134 13 116705573 to 116706256 683 CpG island CpG island 6134
4930435F18Rik 13 116802095 to 116838178 36083 - lincRNA gene RIKEN cDNA 4930435F18 gene
A930041H05Rik 13 116850843 to 116852227 1384 unclassified gene RIKEN cDNA A930041H05 gene
Parp8 13 116854820 to 117025537 170717 - protein coding gene poly (ADP-ribose) polymerase family, member 8
Tssr124164 13 116876370 to 116876384 14 - TSS region transcription start site region 124164
Tssr124165 13 116888990 to 116889003 13 - TSS region transcription start site region 124165
D13Mit77 13 116906406 to 116906680 274 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 77
Ssrq11 13 116906406 to 118829453 1923047 QTL stress response QTL 11
Tssr124166 13 116923922 to 116923939 17 - TSS region transcription start site region 124166
Tssr124167 13 116968704 to 116968706 2 - TSS region transcription start site region 124167
Tssr124168 13 117014761 to 117014776 15 - TSS region transcription start site region 124168
Tssr124169 13 117014802 to 117014809 7 - TSS region transcription start site region 124169
5930433N17Rik 13 117017002 to 117019407 2405 unclassified gene RIKEN cDNA 5930433N17 gene
Tssr124170 13 117024140 to 117024172 32 - TSS region transcription start site region 124170
Cpgi6135 13 117024276 to 117026041 1765 CpG island CpG island 6135
Tssr124171 13 117024569 to 117024570 1 - TSS region transcription start site region 124171
Tssr124172 13 117025347 to 117025364 17 - TSS region transcription start site region 124172
Tssr124173 13 117025385 to 117025444 59 - TSS region transcription start site region 124173
Tssr124174 13 117025505 to 117025541 36 - TSS region transcription start site region 124174
Tssr124175 13 117025546 to 117025557 11 - TSS region transcription start site region 124175
Tssr124176 13 117025834 to 117025854 20 - TSS region transcription start site region 124176
Tssr124177 13 117025932 to 117025963 31 - TSS region transcription start site region 124177
Tssr124178 13 117033732 to 117033789 57 - TSS region transcription start site region 124178
Tssr121212 13 117048725 to 117048768 43 + TSS region transcription start site region 121212
Tssr121213 13 117050580 to 117050606 26 + TSS region transcription start site region 121213
Gm29767 13 117050734 to 117051136 402 + pseudogene predicted gene, 29767
Gm48026 13 117085631 to 117085979 348 - pseudogene predicted gene, 48026
Gm6416 13 117130027 to 117135884 5857 + lincRNA gene predicted gene 6416