Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:93255941-99256237

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220 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tcq14 12 11610000 to 97210000 85600000 QTL total cholesterol QTL 14
Gm34869 12 93210460 to 93283662 73202 + lncRNA gene predicted gene, 34869
Tssr117231 12 93273736 to 93273746 10 - TSS region transcription start site region 117231
4930559C10Rik 12 93416458 to 93444823 28365 - lincRNA gene RIKEN cDNA 4930559C10 gene
Tssr117232 12 93444857 to 93444862 5 - TSS region transcription start site region 117232
Gm21007 12 93716420 to 93716745 325 + pseudogene predicted gene, 21007
Gm23249 12 93746502 to 93746662 160 + snRNA gene predicted gene, 23249
Mir8099-2 12 93927338 to 93927464 126 + miRNA gene microRNA 8099-2
Gm9726 12 93927993 to 93928670 677 - pseudogene predicted gene 9726
Gm7119 12 94001287 to 94001981 694 - pseudogene predicted gene 7119
Tssr114603 12 94055311 to 94055316 5 + TSS region transcription start site region 114603
Gm18749 12 94059010 to 94059686 676 - pseudogene predicted gene, 18749
D12Dcr10 12 94321928 to 94322023 95 DNA segment DNA Segment, Chr 12, Derry C. Roopenian 10
Ppiq10a 12 94545446 to 94545446 0 QTL prepulse inhibition QTL 10a
Tssr117233 12 94652176 to 94652180 4 - TSS region transcription start site region 117233
Gm18504 12 94757575 to 94758503 928 + pseudogene predicted gene, 18504
Gm48011 12 94814075 to 94814481 406 - pseudogene predicted gene, 48011
Gm4808 12 94914480 to 94915682 1202 - pseudogene predicted gene 4808
D12Mit165.3 12 95041611 to 95041745 134 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 165.3
D12Mit165 12 95041756 to 95041905 149 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 165
Tssr114604 12 95162838 to 95162839 1 + TSS region transcription start site region 114604
D12Ertd247e 12 95236592 to 95236814 222 DNA segment DNA segment, Chr 12, ERATO Doi 247, expressed
Tssr117234 12 95292718 to 95292725 7 - TSS region transcription start site region 117234
Gm48013 12 95324907 to 95325319 412 + pseudogene predicted gene, 48013
Gm26055 12 95378845 to 95378951 106 - snRNA gene predicted gene, 26055
Gm40551 12 95530025 to 95558892 28867 - lncRNA gene predicted gene, 40551
Gm22246 12 95619818 to 95619924 106 + snRNA gene predicted gene, 22246
Rpl17-ps2 12 95684196 to 95684727 531 + pseudogene ribosomal protein L17, pseudogene 2
Cpgi4959 12 95691949 to 95692604 655 CpG island CpG island 4959
Tssr114605 12 95692195 to 95692207 12 + TSS region transcription start site region 114605
Tssr114606 12 95692212 to 95692246 34 + TSS region transcription start site region 114606
Flrt2 12 95692226 to 95785215 92989 + protein coding gene fibronectin leucine rich transmembrane protein 2
Tssr114607 12 95692248 to 95692258 10 + TSS region transcription start site region 114607
Tssr114608 12 95692313 to 95692324 11 + TSS region transcription start site region 114608
Tssr114609 12 95692329 to 95692344 15 + TSS region transcription start site region 114609
Cpgi4960 12 95694032 to 95694321 289 CpG island CpG island 4960
Cpgi4961 12 95694937 to 95696109 1172 CpG island CpG island 4961
Tssr114610 12 95695190 to 95695195 5 + TSS region transcription start site region 114610
Tssr114611 12 95695350 to 95695365 15 + TSS region transcription start site region 114611
Tssr114612 12 95695392 to 95695397 5 + TSS region transcription start site region 114612
Tssr114613 12 95695426 to 95695446 20 + TSS region transcription start site region 114613
Tssr114614 12 95695456 to 95695508 52 + TSS region transcription start site region 114614
Tssr114615 12 95695513 to 95695526 13 + TSS region transcription start site region 114615
Tssr114616 12 95701112 to 95701119 7 + TSS region transcription start site region 114616
Tssr114617 12 95703030 to 95703058 28 + TSS region transcription start site region 114617
Tssr114618 12 95709702 to 95709706 4 + TSS region transcription start site region 114618
Gm48014 12 95724956 to 95726255 1299 + unclassified gene predicted gene, 48014
Tssr114619 12 95728330 to 95728342 12 + TSS region transcription start site region 114619
Gm48015 12 95734110 to 95735409 1299 + unclassified gene predicted gene, 48015
Tssr114620 12 95740194 to 95740198 4 + TSS region transcription start site region 114620
Tssr114621 12 95747124 to 95747128 4 + TSS region transcription start site region 114621
Tssr114622 12 95748052 to 95748066 14 + TSS region transcription start site region 114622
Tssr114623 12 95750243 to 95750257 14 + TSS region transcription start site region 114623
Tssr114624 12 95750325 to 95750336 11 + TSS region transcription start site region 114624
Tssr114625 12 95750419 to 95750432 13 + TSS region transcription start site region 114625
D12Mit164 12 95755689 to 95755828 139 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 164
Tssr114626 12 95760411 to 95760417 6 + TSS region transcription start site region 114626
Tssr114627 12 95779079 to 95779084 5 + TSS region transcription start site region 114627
Tssr114628 12 95780593 to 95780607 14 + TSS region transcription start site region 114628
Tssr114629 12 95780780 to 95780794 14 + TSS region transcription start site region 114629
Tssr114630 12 95782607 to 95782610 3 + TSS region transcription start site region 114630
1700019M22Rik 12 96046767 to 96047120 353 - pseudogene RIKEN cDNA 1700019M22 gene
Tssr117235 12 96047144 to 96047161 17 - TSS region transcription start site region 117235
Tssr3913 12 96047178 to 96047183 5 - TSS region transcription start site region 3913
Tssr3914 12 96047196 to 96047199 3 - TSS region transcription start site region 3914
Gm47394 12 96229152 to 96229363 211 - pseudogene predicted gene, 47394
Gm26480 12 96255941 to 96256237 296 - unclassified non-coding RNA gene predicted gene, 26480
Gm47395 12 96292422 to 96293214 792 + pseudogene predicted gene, 47395
Tssr114631 12 96662310 to 96662317 7 + TSS region transcription start site region 114631
Gm47396 12 96662314 to 96663247 933 + lincRNA gene predicted gene, 47396
Tssr117236 12 96736551 to 96736557 6 - TSS region transcription start site region 117236
D12Mit293 12 96746512 to 96746651 139 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 293
D12Mit121 12 96775850 to 96775983 133 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 121
Gm6863 12 96922423 to 96923058 635 - pseudogene predicted gene 6863
Tssr114632 12 96923046 to 96923062 16 + TSS region transcription start site region 114632
Cpgi4962 12 97061487 to 97061793 306 CpG island CpG island 4962
Gm47397 12 97098706 to 97102464 3758 - lincRNA gene predicted gene, 47397
Tssr114633 12 97124308 to 97124341 33 + TSS region transcription start site region 114633
Tssr114634 12 97124504 to 97124527 23 + TSS region transcription start site region 114634
D12Mit96 12 97159841 to 97159952 111 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 96
Tssr114635 12 97171034 to 97171043 9 + TSS region transcription start site region 114635
Gm40552 12 97312849 to 97315853 3004 + lincRNA gene predicted gene, 40552
Tssr114636 12 97354549 to 97354550 1 + TSS region transcription start site region 114636
Gm23558 12 97371034 to 97371113 79 - rRNA gene predicted gene, 23558
Gm5186 12 97564149 to 97565068 919 - pseudogene predicted gene 5186
Gm2398 12 97663447 to 97664329 882 + pseudogene predicted gene 2398
Gm8785 12 97677055 to 97677541 486 - pseudogene predicted gene 8785
Gm35274 12 97735450 to 97740235 4785 - lincRNA gene predicted gene, 35274
Gm6869 12 97844442 to 97845119 677 + pseudogene predicted gene 6869
Gm35326 12 97869779 to 97872520 2741 - lincRNA gene predicted gene, 35326
D12Mit120 12 97949752 to 97949863 111 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 120
Ppiq11a 12 98022884 to 98022884 0 QTL prepulse inhibition QTL 11a
Gm47415 12 98076355 to 98108567 32212 - lincRNA gene predicted gene, 47415
Gm35412 12 98099357 to 98100355 998 - pseudogene predicted gene, 35412
Galc 12 98202294 to 98259459 57165 - protein coding gene galactosylceramidase
Tssr117237 12 98203664 to 98203687 23 - TSS region transcription start site region 117237
Tssr117238 12 98249346 to 98249351 5 - TSS region transcription start site region 117238
Tssr117239 12 98249382 to 98249403 21 - TSS region transcription start site region 117239
Cpgi4963 12 98258721 to 98259699 978 CpG island CpG island 4963
Gm47439 12 98259060 to 98260307 1247 + antisense lncRNA gene predicted gene, 47439
Tssr117240 12 98259247 to 98259338 91 - TSS region transcription start site region 117240
Tssr117241 12 98259339 to 98259360 21 - TSS region transcription start site region 117241
Tssr117242 12 98259416 to 98259446 30 - TSS region transcription start site region 117242
Tssr114637 12 98259580 to 98259589 9 + TSS region transcription start site region 114637
Tssr114638 12 98268626 to 98268654 28 + TSS region transcription start site region 114638
Gpr65 12 98268635 to 98276644 8009 + protein coding gene G-protein coupled receptor 65
Tssr114639 12 98268656 to 98268677 21 + TSS region transcription start site region 114639
Tssr114640 12 98268678 to 98268690 12 + TSS region transcription start site region 114640
Tssr117243 12 98269717 to 98269728 11 - TSS region transcription start site region 117243
Tssr114641 12 98270135 to 98270155 20 + TSS region transcription start site region 114641
Tssr117244 12 98271009 to 98271018 9 - TSS region transcription start site region 117244
Tssr114642 12 98271781 to 98271824 43 + TSS region transcription start site region 114642
Gm47566 12 98274732 to 98279661 4929 - antisense lncRNA gene predicted gene, 47566
Cpgi4964 12 98275662 to 98275985 323 CpG island CpG island 4964
Tssr114643 12 98276038 to 98276057 19 + TSS region transcription start site region 114643
Gm47567 12 98277517 to 98281040 3523 + unclassified gene predicted gene, 47567
D12Mit211 12 98365670 to 98365802 132 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 211
Tssr3915 12 98385695 to 98385699 4 - TSS region transcription start site region 3915
Tssr117245 12 98385827 to 98385834 7 - TSS region transcription start site region 117245
Tssr117246 12 98385860 to 98385867 7 - TSS region transcription start site region 117246
Tssr117247 12 98385869 to 98385874 5 - TSS region transcription start site region 117247
Tssr117248 12 98385907 to 98385915 8 - TSS region transcription start site region 117248
Tssr117249 12 98385930 to 98385934 4 - TSS region transcription start site region 117249
Tssr117250 12 98385984 to 98385991 7 - TSS region transcription start site region 117250
Tssr117251 12 98386178 to 98386214 36 - TSS region transcription start site region 117251
Tssr117252 12 98386875 to 98386879 4 - TSS region transcription start site region 117252
Tssr117253 12 98419624 to 98419644 20 - TSS region transcription start site region 117253
Tssr117254 12 98420036 to 98420071 35 - TSS region transcription start site region 117254
Tssr117255 12 98420087 to 98420096 9 - TSS region transcription start site region 117255
Tssr114644 12 98420142 to 98420153 11 + TSS region transcription start site region 114644
Tssr114645 12 98420183 to 98420204 21 + TSS region transcription start site region 114645
Kcnk10 12 98429432 to 98578213 148781 - protein coding gene potassium channel, subfamily K, member 10
Tssr117256 12 98432166 to 98432170 4 - TSS region transcription start site region 117256
5330409N07Rik 12 98444817 to 98448334 3517 - unclassified gene RIKEN cDNA 5330409N07 gene
Tssr114646 12 98445526 to 98445530 4 + TSS region transcription start site region 114646
Tssr114647 12 98445978 to 98446004 26 + TSS region transcription start site region 114647
Gm40893 12 98523844 to 98526583 2739 + antisense lncRNA gene predicted gene, 40893
Tssr117257 12 98528701 to 98528708 7 - TSS region transcription start site region 117257
Tssr117258 12 98528752 to 98528764 12 - TSS region transcription start site region 117258
Tssr117259 12 98572366 to 98572370 4 - TSS region transcription start site region 117259
Cpgi4965 12 98573821 to 98575622 1801 CpG island CpG island 4965
Tssr117260 12 98574539 to 98574558 19 - TSS region transcription start site region 117260
Tssr117261 12 98574574 to 98574586 12 - TSS region transcription start site region 117261
Tssr117262 12 98574685 to 98574719 34 - TSS region transcription start site region 117262
Tssr117263 12 98574728 to 98574741 13 - TSS region transcription start site region 117263
Tssr117264 12 98574748 to 98574775 27 - TSS region transcription start site region 117264
Tssr117265 12 98575035 to 98575048 13 - TSS region transcription start site region 117265
Cpgi4966 12 98577976 to 98578200 224 CpG island CpG island 4966
Tssr117266 12 98578036 to 98578046 10 - TSS region transcription start site region 117266
Tssr117267 12 98578106 to 98578121 15 - TSS region transcription start site region 117267
Gm47346 12 98582364 to 98585976 3612 - unclassified gene predicted gene, 47346
Gm25486 12 98599033 to 98599095 62 + snRNA gene predicted gene, 25486
Tssr117268 12 98606813 to 98606818 5 - TSS region transcription start site region 117268
Cpgi4967 12 98627990 to 98628436 446 CpG island CpG island 4967
Tssr114648 12 98628126 to 98628202 76 + TSS region transcription start site region 114648
Spata7 12 98628157 to 98669815 41658 + protein coding gene spermatogenesis associated 7
Tssr114649 12 98628207 to 98628235 28 + TSS region transcription start site region 114649
Gm47370 12 98642225 to 98644053 1828 + unclassified gene predicted gene, 47370
Gm47372 12 98648938 to 98652481 3543 - unclassified gene predicted gene, 47372
Tssr3916 12 98650762 to 98650771 9 + TSS region transcription start site region 3916
Ptpn21 12 98676741 to 98737405 60664 - protein coding gene protein tyrosine phosphatase, non-receptor type 21
Cpgi4968 12 98677484 to 98677660 176 CpG island CpG island 4968
Tssr117269 12 98683684 to 98683693 9 - TSS region transcription start site region 117269
Tssr117270 12 98683697 to 98683706 9 - TSS region transcription start site region 117270
Tssr117271 12 98683726 to 98683746 20 - TSS region transcription start site region 117271
Tssr117272 12 98683766 to 98683783 17 - TSS region transcription start site region 117272
Cpgi4969 12 98689172 to 98689563 391 CpG island CpG island 4969
Tssr117273 12 98733906 to 98733936 30 - TSS region transcription start site region 117273
Cpgi4970 12 98734510 to 98734748 238 CpG island CpG island 4970
Tssr117274 12 98734627 to 98734693 66 - TSS region transcription start site region 117274
Cpgi4971 12 98736964 to 98737922 958 CpG island CpG island 4971
Tssr117275 12 98737501 to 98737515 14 - TSS region transcription start site region 117275
Tssr117276 12 98737527 to 98737539 12 - TSS region transcription start site region 117276
Tssr117277 12 98737548 to 98737567 19 - TSS region transcription start site region 117277
Tssr117278 12 98737593 to 98737616 23 - TSS region transcription start site region 117278
Cpgi4972 12 98746716 to 98747755 1039 CpG island CpG island 4972
Tssr114650 12 98746935 to 98747046 111 + TSS region transcription start site region 114650
Zc3h14 12 98746964 to 98787753 40789 + protein coding gene zinc finger CCCH type containing 14
Tssr114651 12 98747461 to 98747467 6 + TSS region transcription start site region 114651
Tssr114652 12 98755006 to 98755011 5 + TSS region transcription start site region 114652
9430031K09Rik 12 98762048 to 98762972 924 + unclassified gene RIKEN cDNA 9430031K09 gene
D230049E03Rik 12 98766105 to 98770355 4250 + unclassified gene RIKEN cDNA D230049E03 gene
Tssr3917 12 98771003 to 98771010 7 + TSS region transcription start site region 3917
Tssr114653 12 98771018 to 98771041 23 + TSS region transcription start site region 114653
Tssr114654 12 98771050 to 98771064 14 + TSS region transcription start site region 114654
Eml5 12 98786805 to 98901484 114679 - protein coding gene echinoderm microtubule associated protein like 5
Gm48062 12 98794448 to 98797069 2621 + unclassified gene predicted gene, 48062
Gm35463 12 98803824 to 98823679 19855 + lncRNA gene predicted gene, 35463
Gm48063 12 98810683 to 98813199 2516 - unclassified gene predicted gene, 48063
Tssr117279 12 98822235 to 98822238 3 - TSS region transcription start site region 117279
A930040O22Rik 12 98831813 to 98832785 972 + unclassified gene RIKEN cDNA A930040O22 gene
Tssr117280 12 98877757 to 98877761 4 - TSS region transcription start site region 117280
Cpgi4973 12 98900429 to 98901720 1291 CpG island CpG island 4973
Tssr117281 12 98901264 to 98901275 11 - TSS region transcription start site region 117281
Tssr117282 12 98901311 to 98901322 11 - TSS region transcription start site region 117282
Tssr117283 12 98901415 to 98901472 57 - TSS region transcription start site region 117283
Tssr117284 12 98901478 to 98901492 14 - TSS region transcription start site region 117284
Cpgi4974 12 98920408 to 98920719 311 CpG island CpG island 4974
Tssr114655 12 98920531 to 98920553 22 + TSS region transcription start site region 114655
Tssr114656 12 98920567 to 98920619 52 + TSS region transcription start site region 114656